Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCAATTGCTTCTCAATTAACTGTTTTTCGACACTCTACAACTACATTTCGGTAAGTTTTGTTCATTAATTTTGATGAAGAAAAGTTAGGGTTTTTTCCCCAAATTTGTGAATTGTTGGAAAAAAGTGGCGTTGGTCTCTAAGCATATGTCATTTTTCAATGGAAGTACTGATATAAACAGCACCATGTTCATTTTCAATGATATTACAGATATTCATGATGGTCTGTATTTTTCTTCATTGAAGCTTCTGTTCTTGTGAAACCAACATCAGCAAATAGTCAAAACTTCCCCAAAACATCTCCATTATTTCACACAAAAGACAGGTTGCTTAATTTTACTAATTCTAGAAAAAAAAATTGGTTGAACTTTTGGGGGTGAAAAATTGGAAAATTTTGGGTTACTGTTACAAAATAGTGAATAAATTTGGAGGGTTTTGTGATAGATTGAAAATTGTGGGTACCCATTTGGAGATCTTTGCATGAAATTGCAAAATTATTAAGGGTTTATTTCAAGTGAAGTGAATATTGTTGAGTAGAGAGAACTGAGAAGTGGGGTTTTTAATTAAGGAGAGAGAAAATGTGTGGGCAACAACAGAAAAGAGTGAAAAGAGTTCATCTGAAGGTGTTGAGAAGGTAATGGTTGTTGTGAAAGCTTCAAAGGAAATCCCAAAGGCAGCTCTTGTTCGGGCTTTGAGTCATTTTGTTCAACCTGGTGATTGCATCACTCTCATTGTGGTTGTCCCTCCTCCCAGTTCAGATCTGAATTCCCAAACTCGTTTTTACTTTAATATTTTTGTTTTTGTTTCAGGTATGTGGAAGATTGGGCCAAAAAAATTTGGGGGAAGGAAGAACATAGATAAGCAATAAATTTTGGGGATTCTTTTTTGATTTTTGGCTCCAAGTTAGTTTTAAGTGGGAAAGAGGGTGTAAGTAGCAAAACCGGGCAAGTCAAGCCGGAAAATGTTGGGCCAACGCCTGAAAACCCATTTAGGTTGTCTTTCGCAAATTTAATTTAGTTTAAGGTCTGTTTTCGCAAAAAAAAATAGAAAATGTTGTCTTTCGCAAAAAAGTGGTTATAAAAGGTTGTCTTTTGCAAATTTGCCTAATTTTTATGACCCATTACTTTGACTATATTTTGTGCAAATGAGTCACCAAAGACGAATCATTTTTTTTTTGGGTGCGAATGAGCCACAACGGCGGGGATGAGAATCAATCTCAGGATCACCTAAATCCGTGAGGGAAGCTCTAACCAACTGAGCTATACTCCACTCTCACGATGCAAATTATAAATGTGGGCGAGGAATGAAACATGAAACATATCATAAACAGATTCTCGGTATTAACCACTAGGCCAAGAGTTTATTAGTTTATTGGTACTCCGTACTTATGGTTACTGGTTACTCCGTCAGTCCCTTTTTATTTGCCCCATTTTTTTGTTTTTAGTTGTCCCTTTGAGATTACTCCATAACTTAAATGTTAAAAAAATTCACCATATCTCTATCACTCTCCTTTTTTTTTTTTTTTTTTNTTTTTTTTTGAGAGGTAAGAAGAAGTACATTAGGAGGCCCTCCGCACATTGGTAACTCCTAAGTAATCGTTTGAAACAATAGAAGACAACATAGGGCTAATCCCCGGATCAAAATACATAGTATTTTGAATCAGATGACCAACGTTAGCAATCCATATGCCGCCTGATTTGCTTCTCTGTAGATGTGCGAGATCTCCCAAGAGTCAAAGTGTTGAGAAAGAAGGTCTTTGATATCCTTAATGATGGTGTCAAGCTTCCATGGTGTCGCCCATATTCCCTTAACGGTGTTATGACTAATAGATTGTCTCCTTCTATAAATAAGTTCTTGATTTGAAGATGAATTGCTACTTGAATGCCCTTGTGGAGGGCGAGCGCTTCAGCCATGTAGACTTGAGAGTTGCCGAGGTTGGAGGTCTCGGCGCGTAAGTGTTGGCCCATATGGTCTCTGATGATGAAGCCTGCTGCAGCAGAGGAATTTTTGCGTGATCCGTCAAAGTTGAGTTTGAAATGGTTTGGAGGCGGTGGATGCCAGCGGACTGGGATGTTGGTGCTGGTGGTTGAGGTGGAAGGTGAGGCACCCGAAAGGAGACCATTTTCAAGGGCGAAGTCAAGTTTGTTCCTGGTAAAGACCACTTTACTACCTTTATGTGCACTCCGTATTATTTACTTCAATCCTGACTAAAGTGAAGGTTTTTTGGTTGAACAATTAAAAGATAGTACCTCCGTTTTCGAAAGTTCTTTACGTTTTTCGTTTTAGTTCGTTCCTAAAAGCTCTTTATACTTTACTTTATTTTATTTTTAACATATAAATTTTACATTTATACCTTTAATTGGCCCATTACAGCATACAACTTGCAATACTTTAATATCCATTTTTATCCACTCACATATTGAACAATTTATAACTACTCATTTTTCTATTTATTACCCCATCATCGTATGTTCAAAAAAATTCCTCATTATTGTGTAAATAGAAACGAAAGATCATTTAAAAACGGAGGTAACCAGAGAGAGAGGATTATAGAAGAAGGAATCTCCGCCTCTCCGCAACACCCCTGTTTTTCTCTCTCCTGCACGCTGTATTGTGTATAGTTGTATTGTATACACTTCAAAACGTGTCCTATGTGTTAACAATCTTAATAAAGCAAAACAAAAAGCATCATCTACAAGTAGTAACAAATATCAACCCAACTTCTAATCTTCTTCTACATTATTCTTCACCATTTCCAAACCCAGAAAAACAAATCAAATAAAATCTAAAAATGACAGGAGCAAAGAAATTCGGAGTAGCAGTAGATTTCTCAAAGAGCAGCAAGTGTGCACTTCAATGGGCAATTGACAACTTAGCTGATAAGGGCGATACCTTATTCCTCATCCATGTTAAACACTCTTCTCATGATGAATCTCGAAATCTTCTCTGGGTTAAATCTGGCTCCCGTATGACCTCTTATCTGATAATTTCACCTTCAGATCACTCTGTTTTTATCACTTGTATTGATGATCTGCTGACTAACTTATTGGTATTGATGCAGCTCTTATCCCTTTGGTGGAGTTCAGACAACCTGAGGTTATGAAGAAGTACGAGGTTCAGACTGACATTGAAGTTCTTGATATGTGTGATACTGCTTCTCGCCAAAAAGAGGTTCCTTTTTTCAAAATTTATTAAATTATAATTATTAATTTTTATTTGATGTTGTTATTTGTTAAATTTAATGTCTGTTTTTGGGATGTATGAAGATTCATATTGTGACAAAAATATACTGGGGAGATGCAAGGGAAAAGGTGATGGAAGCCGTTGAAGATCTGAAATTGGATGCTTTGGTAATGGGAAGCAGGGGACTTACTGGTCTTAAAAGGTGATCAATTTTGGTTTTTGAGATTAATTCAATTTGTCAATTTGTTGTTCATTTTGGATGATCTGTTACAAATTTAGTTCTATAAATTATTTTAGGGGTAAAGTTTGGATGATTCTTAGTACTAGTGTGTAGTGTCCACACAACGAGATCTTGTGTATCATCTCCAAGACTTCACCAATTAAGCTGGTTGACATCGGTATTCATGTAATGTTGGTGTACCCATTAGAAAGATTTGTGCTAAAGATAGTAATTGATATGGACTTTTAAAAGAAGTGATTTATACAAATTGTTCTAATGAAAGCAATAAATCCTAGCACAATATGGAGATGGTTTCACAAATTGAACTATTAGATATATGCAAAATTAGATTTTTAGGCAAGGAATAGGAAAATTTAGGAGAATCGGATTTTTTTTGCTCGAGTTATGAAGTTGTACTTGTTAAGAGTAGACAATATAAATTACAAAAGGGGTAAGGGGATTCGAACCTGAGACCTATTGTACACAGACTCTCAGTCTTAACCACTAGGCAAAGACATCATTGGTACTTGTTAAGAGTATTAGCCACATGTGATTTGTGGGCTACTTAACCTATCACCAATTGCTTTTAGGATGAAACCCTATCAGCCTATCAGACTTATATATGGTCAGTACGTCTTCCCTCTTGTCAGGGCTCGTGTTAGGTCCAGTGAGTTATACTCGTATTAGATTGGGAACAAGGTTACCGGATGGTCTAGTTACTAGTCATATTAGAATTAGAGAAGCTAAGGAATTACTGTCCAGGGTTACAATTTGGTTCTTTACAATTCGTCGTCTCTATTATTCTAAAGATCCAAAAAGGAAATGATCCTCATATAACAAATTGATGATCAGTTTATCACAATTTACAACAAAGATTGAGTTTTGCTATTCATTTATCAGTCCATGAACTGAATTATGTGGCTTTCTAATGGTCTATTCCTAACTAACATAATCAATTTGTCGAATTGGCTGTAATTTGCAGGATAATCATGGGGAGTGTGGCAAACTATGTGATCAGCAATGCTAATGTACCAGTGACCATTGTCAAAGAGCCAGGAACCCATAAGGCCTGATTTGGTTTGAGTGGTCTAATTCATGTAATAGTACTGGTTAAGACCGACCGATGTTGATGGTTGTTTGTTTTACTAACGAGGGTTCAGAGCTCATCAGTGCTGCTGTATTTTTTATCTTGGATACCTAATTTGTTGTTGTTGTTGTTGTTGTTGTTGTGGCTGTTAATAATTCTGGGATGGCCTCGGATCGGGCCAACTAGAAGATATCATTACAGTGTATTACTTGCATCTCTTCATACTTTCATAGTAATAAAGGAAACCGTTGTTTACATTTTGGAACAATTTCTTGTGTTTTTGGAACTATGATTGAAGCCTTTTGTAAATCAAATTATCCTGTCCAAG GCAATTGCTTCTCAATTAACTGTTTTTCGACACTCTACAACTACATTTCGAAAAACAAATCAAATAAAATCTAAAAATGACAGGAGCAAAGAAATTCGGAGTAGCAGTAGATTTCTCAAAGAGCAGCAAGTGTGCACTTCAATGGGCAATTGACAACTTAGCTGATAAGGGCGATACCTTATTCCTCATCCATGTTAAACACTCTTCTCATGATGAATCTCGAAATCTTCTCTGGGTTAAATCTGGCTCCCCTCTTATCCCTTTGGTGGAGTTCAGACAACCTGAGGTTATGAAGAAGTACGAGGTTCAGACTGACATTGAAGTTCTTGATATGTGTGATACTGCTTCTCGCCAAAAAGAGATTCATATTGTGACAAAAATATACTGGGGAGATGCAAGGGAAAAGGTGATGGAAGCCGTTGAAGATCTGAAATTGGATGCTTTGGTAATGGGAAGCAGGGGACTTACTGGTCTTAAAAGGATAATCATGGGGAGTGTGGCAAACTATGTGATCAGCAATGCTAATGTACCAGTGACCATTGTCAAAGAGCCAGGAACCCATAAGGCCTGATTTGGTTTGAGTGGTCTAATTCATGTAATAGTACTGGTTAAGACCGACCGATGTTGATGGTTGTTTGTTTTACTAACGAGGGTTCAGAGCTCATCAGTGCTGCTGTATTTTTTATCTTGGATACCTAATTTGTTGTTGTTGTTGTTGTTGTTGTTGTGGCTGTTAATAATTCTGGGATGGCCTCGGATCGGGCCAACTAGAAGATATCATTACAGTGTATTACTTGCATCTCTTCATACTTTCATAGTAATAAAGGAAACCGTTGTTTACATTTTGGAACAATTTCTTGTGTTTTTGGAACTATGATTGAAGCCTTTTGTAAATCAAATTATCCTGTCCAAG ATGACAGGAGCAAAGAAATTCGGAGTAGCAGTAGATTTCTCAAAGAGCAGCAAGTGTGCACTTCAATGGGCAATTGACAACTTAGCTGATAAGGGCGATACCTTATTCCTCATCCATGTTAAACACTCTTCTCATGATGAATCTCGAAATCTTCTCTGGGTTAAATCTGGCTCCCCTCTTATCCCTTTGGTGGAGTTCAGACAACCTGAGGTTATGAAGAAGTACGAGGTTCAGACTGACATTGAAGTTCTTGATATGTGTGATACTGCTTCTCGCCAAAAAGAGATTCATATTGTGACAAAAATATACTGGGGAGATGCAAGGGAAAAGGTGATGGAAGCCGTTGAAGATCTGAAATTGGATGCTTTGGTAATGGGAAGCAGGGGACTTACTGGTCTTAAAAGGATAATCATGGGGAGTGTGGCAAACTATGTGATCAGCAATGCTAATGTACCAGTGACCATTGTCAAAGAGCCAGGAACCCATAAGGCCTGA MTGAKKFGVAVDFSKSSKCALQWAIDNLADKGDTLFLIHVKHSSHDESRNLLWVKSGSPLIPLVEFRQPEVMKKYEVQTDIEVLDMCDTASRQKEIHIVTKIYWGDAREKVMEAVEDLKLDALVMGSRGLTGLKRIIMGSVANYVISNANVPVTIVKEPGTHKA Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo12285.1 vs. NCBI nr
Match: gi|902189119|gb|KNA11291.1| (hypothetical protein SOVF_136620 [Spinacia oleracea]) HSP 1 Score: 328.9 bits (842), Expect = 4.900e-87 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1
BLAST of Spo12285.1 vs. NCBI nr
Match: gi|731322104|ref|XP_010671709.1| (PREDICTED: uncharacterized protein C167.05 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 287.7 bits (735), Expect = 1.300e-74 Identity = 139/164 (84.76%), Postives = 152/164 (92.68%), Query Frame = 1
BLAST of Spo12285.1 vs. NCBI nr
Match: gi|848862576|ref|XP_012832069.1| (PREDICTED: universal stress protein A-like protein [Erythranthe guttata]) HSP 1 Score: 249.6 bits (636), Expect = 3.800e-63 Identity = 119/163 (73.01%), Postives = 143/163 (87.73%), Query Frame = 1
BLAST of Spo12285.1 vs. NCBI nr
Match: gi|225440536|ref|XP_002275745.1| (PREDICTED: universal stress protein A-like protein [Vitis vinifera]) HSP 1 Score: 247.3 bits (630), Expect = 1.900e-62 Identity = 118/163 (72.39%), Postives = 141/163 (86.50%), Query Frame = 1
BLAST of Spo12285.1 vs. NCBI nr
Match: gi|351721446|ref|NP_001238489.1| (uncharacterized protein LOC100499951 [Glycine max]) HSP 1 Score: 243.0 bits (619), Expect = 3.500e-61 Identity = 116/159 (72.96%), Postives = 142/159 (89.31%), Query Frame = 1
BLAST of Spo12285.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QXP6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_136620 PE=4 SV=1) HSP 1 Score: 328.9 bits (842), Expect = 3.400e-87 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1
BLAST of Spo12285.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CRN2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g054060 PE=4 SV=1) HSP 1 Score: 287.7 bits (735), Expect = 8.700e-75 Identity = 139/164 (84.76%), Postives = 152/164 (92.68%), Query Frame = 1
BLAST of Spo12285.1 vs. UniProtKB/TrEMBL
Match: A0A022RP77_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015230mg PE=4 SV=1) HSP 1 Score: 249.6 bits (636), Expect = 2.600e-63 Identity = 119/163 (73.01%), Postives = 143/163 (87.73%), Query Frame = 1
BLAST of Spo12285.1 vs. UniProtKB/TrEMBL
Match: A5C9Q0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g01430 PE=4 SV=1) HSP 1 Score: 247.3 bits (630), Expect = 1.300e-62 Identity = 118/163 (72.39%), Postives = 141/163 (86.50%), Query Frame = 1
BLAST of Spo12285.1 vs. UniProtKB/TrEMBL
Match: A0A0B2PEL4_GLYSO (Universal stress protein OS=Glycine soja GN=glysoja_038001 PE=4 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 2.500e-61 Identity = 116/159 (72.96%), Postives = 142/159 (89.31%), Query Frame = 1
BLAST of Spo12285.1 vs. ExPASy Swiss-Prot
Match: PHO32_ARATH (Universal stress protein PHOS32 OS=Arabidopsis thaliana GN=PHOS32 PE=1 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 7.500e-11 Identity = 51/165 (30.91%), Postives = 81/165 (49.09%), Query Frame = 1
BLAST of Spo12285.1 vs. ExPASy Swiss-Prot
Match: PHO34_ARATH (Universal stress protein PHOS34 OS=Arabidopsis thaliana GN=PHOS34 PE=1 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 1.100e-9 Identity = 49/169 (28.99%), Postives = 79/169 (46.75%), Query Frame = 1
BLAST of Spo12285.1 vs. ExPASy Swiss-Prot
Match: Y531_METJA (Universal stress protein MJ0531 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0531 PE=3 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 1.600e-8 Identity = 36/108 (33.33%), Postives = 59/108 (54.63%), Query Frame = 1
BLAST of Spo12285.1 vs. ExPASy Swiss-Prot
Match: Y577_METJA (Universal stress protein MJ0577 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0577 PE=1 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 3.500e-8 Identity = 47/158 (29.75%), Postives = 81/158 (51.27%), Query Frame = 1
BLAST of Spo12285.1 vs. ExPASy Swiss-Prot
Match: YFK5_SCHPO (Uncharacterized protein C167.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC167.05 PE=1 SV=2) HSP 1 Score: 58.5 bits (140), Expect = 7.700e-8 Identity = 38/150 (25.33%), Postives = 76/150 (50.67%), Query Frame = 1
BLAST of Spo12285.1 vs. TAIR (Arabidopsis)
Match: AT3G53990.1 (Adenine nucleotide alpha hydrolases-like superfamily protein) HSP 1 Score: 223.0 bits (567), Expect = 1.300e-58 Identity = 104/154 (67.53%), Postives = 134/154 (87.01%), Query Frame = 1
BLAST of Spo12285.1 vs. TAIR (Arabidopsis)
Match: AT3G17020.1 (Adenine nucleotide alpha hydrolases-like superfamily protein) HSP 1 Score: 168.3 bits (425), Expect = 3.900e-42 Identity = 84/157 (53.50%), Postives = 110/157 (70.06%), Query Frame = 1
BLAST of Spo12285.1 vs. TAIR (Arabidopsis)
Match: AT3G03270.1 (Adenine nucleotide alpha hydrolases-like superfamily protein) HSP 1 Score: 150.2 bits (378), Expect = 1.100e-36 Identity = 71/135 (52.59%), Postives = 101/135 (74.81%), Query Frame = 1
BLAST of Spo12285.1 vs. TAIR (Arabidopsis)
Match: AT3G58450.1 (Adenine nucleotide alpha hydrolases-like superfamily protein) HSP 1 Score: 80.5 bits (197), Expect = 1.100e-15 Identity = 53/164 (32.32%), Postives = 80/164 (48.78%), Query Frame = 1
BLAST of Spo12285.1 vs. TAIR (Arabidopsis)
Match: AT3G62550.1 (Adenine nucleotide alpha hydrolases-like superfamily protein) HSP 1 Score: 77.4 bits (189), Expect = 9.100e-15 Identity = 57/166 (34.34%), Postives = 88/166 (53.01%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo12285.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo12285.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo12285.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo12285.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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