Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGCTGCAATTTTTCTTTGCGGTTGCGTTCTCGGCGGTACCGCTGACGCTATACGTTCCGCCGATGAGGCACTTGACTCTGTTTGTGGCGGCAATTGAAGAGCTTATGAGGGAGACTAGCGATTACCGAAGAAGAGTTGTTCCTCGCTTCCGTCGCGCCTTCCGATTCTTGCTCCGTGCCGCTTCCTCCTCCACCTCTACCTCCGCCAATTAG ATGGTGCTGCAATTTTTCTTTGCGGTTGCGTTCTCGGCGGTACCGCTGACGCTATACGTTCCGCCGATGAGGCACTTGACTCTGTTTGTGGCGGCAATTGAAGAGCTTATGAGGGAGACTAGCGATTACCGAAGAAGAGTTGTTCCTCGCTTCCGTCGCGCCTTCCGATTCTTGCTCCGTGCCGCTTCCTCCTCCACCTCTACCTCCGCCAATTAG ATGGTGCTGCAATTTTTCTTTGCGGTTGCGTTCTCGGCGGTACCGCTGACGCTATACGTTCCGCCGATGAGGCACTTGACTCTGTTTGTGGCGGCAATTGAAGAGCTTATGAGGGAGACTAGCGATTACCGAAGAAGAGTTGTTCCTCGCTTCCGTCGCGCCTTCCGATTCTTGCTCCGTGCCGCTTCCTCCTCCACCTCTACCTCCGCCAATTAG MVLQFFFAVAFSAVPLTLYVPPMRHLTLFVAAIEELMRETSDYRRRVVPRFRRAFRFLLRAASSSTSTSAN Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo12289.1 vs. NCBI nr
Match: gi|902230957|gb|KNA22056.1| (hypothetical protein SOVF_037480 [Spinacia oleracea]) HSP 1 Score: 132.1 bits (331), Expect = 3.800e-28 Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1
BLAST of Spo12289.1 vs. NCBI nr
Match: gi|870867969|gb|KMT18838.1| (hypothetical protein BVRB_2g029430 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 102.1 bits (253), Expect = 4.200e-19 Identity = 53/65 (81.54%), Postives = 59/65 (90.77%), Query Frame = 1
BLAST of Spo12289.1 vs. NCBI nr
Match: gi|629085464|gb|KCW51821.1| (hypothetical protein EUGRSUZ_J01270 [Eucalyptus grandis]) HSP 1 Score: 68.6 bits (166), Expect = 5.200e-9 Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 1
BLAST of Spo12289.1 vs. NCBI nr
Match: gi|870864303|gb|KMT15423.1| (hypothetical protein BVRB_3g061280 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 68.6 bits (166), Expect = 5.200e-9 Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 1
BLAST of Spo12289.1 vs. NCBI nr
Match: gi|702477900|ref|XP_010032424.1| (PREDICTED: uncharacterized protein LOC104421944 [Eucalyptus grandis]) HSP 1 Score: 68.6 bits (166), Expect = 5.200e-9 Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 1
BLAST of Spo12289.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RR91_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_037480 PE=4 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 2.700e-28 Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1
BLAST of Spo12289.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D3T3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g029430 PE=4 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 2.900e-19 Identity = 53/65 (81.54%), Postives = 59/65 (90.77%), Query Frame = 1
BLAST of Spo12289.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CTX6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g061280 PE=4 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 3.600e-9 Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 1
BLAST of Spo12289.1 vs. UniProtKB/TrEMBL
Match: A0A059ADU6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01270 PE=4 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 3.600e-9 Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 1
BLAST of Spo12289.1 vs. UniProtKB/TrEMBL
Match: W9QPR0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000744 PE=4 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 6.100e-9 Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 1
BLAST of Spo12289.1 vs. TAIR (Arabidopsis)
Match: AT3G52105.1 (unknown protein) HSP 1 Score: 56.2 bits (134), Expect = 9.400e-9 Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo12289.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo12289.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo12289.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo12289.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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