Spo12308 (gene)

Overview
NameSpo12308
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionS-adenosylmethionine-dependent methyltransferase, putative
Locationchr2 : 36558100 .. 36560623 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATTTCGATCGTGATATATTTGAGTCTCAAACTCTCACCAGATTGTGATATCGAGGTGGATACAAAGTAATGTTGATATCTTTGGGAGATTAAGCTTTGGGAGAAAGGTTTTTGATGTTTACTATAATTCTTTGTTAAACTCGATGGATGGATTTAAAATGGTCTTGTCTTTATGCAACATTTGTCAGCTTAATGGTGGTGGTGAGATAGATAATTAACTTTTACCTGTACCAGATTTTATGAAGTTCCAAAATTTGGAATCTAATGTTTACAGTATGCCTACTGTCGTGCAACTTTGCATAAGCAAGACCGAGGTTCCGTATTTAAAAGTTCACAACTATCTACTTCAGGAGTCTTGTGTTGTTTTTATGTTGTCTAGCAAAGTATGAAGTCTTTCTTGTGTGTACCATATAAAAGCCAAGTCTCCAAGCGTTGCATCTGTTTTTCTCACAATTGGGTTGAGCTTGAGTTCTTTCAATCAAGCTGGGTATTTCCTCAATATACAAGTAATGTTCCCTTTTTTTTGTTACAGCAAATAGTTTGCTTGCTTGAGCTTGAGACAGTTCTTTCAGTCAAGCTGGCTTGAGCTAGAGCTCTCTGTACGAATTCATTTATAATGATTGTCTTAGAATAATCTTCTTTATTAGTAATTATTTATGTGCTAGCCTTCAAAGCCATGGAATTTTGAATGATCCCTAGAAAACTAATGCATGCGACGGTGTATTTTTTTCATTTTCTTTTATTTTAAATACATTTTTGTATATACTAGTAGTAATCAGATTCAAGGTAATTATTTTTTCATTTTCATTCTTTTAGTAATTTATAATATACTAGTAGTAATTCAAGGATCCTTGTTTCTGGTTTCTTGTAACAGCTATGGACTATCTTGCCCTGCTCCTGACTTCGAAGAAGATTCTTTTTCTGCTACTGTAAAGGATGTCCTTTGTGAGAAGGGGATTTTTGTCATTAATGTGGTCTTAAGATCTCCATCCATAAAGGAAGTGGTTGTATCAAGGATGAGAACGGTAAGAACATTACCTGGGAATTTGGTATATTTTCAGTAGAAGCTGTGTGCGAACTGCGAATCAATATTTAGTCTGCCAGCTTGGATTCTTTGCTTGTTTGACATGTTTACTGTTTCAAATTTTGGTAGTGTTTGGCCAAGCTCGAAACTGAAATTTGGCAAACAAGGTGTTTCATAGAAGTAGACTGAAAACGTAAATTCATGCATGACAATATGTTAATTTGTATATTTTCTTCAAAGGTGTACCAATACTGCACATTGCTGCACTTCTCGTCGCTCCCTGGCGTTTGCACTTAGATAAATGAGAAGGTTCAAGCTTGGGGGGAAGCCATCAAGCAAACACCTTTCAGTTTCAGTGTTCAAGCAAGCTCAAGTACACCTCACACGTTATATGGAAGAAAACCTCACCGAGCCAGCTACTAATTTCGGGTAATTAATAATGATTTTGTGGCATTCAAAAGTTGACTAGTTCAGCCACATCTTACTTTTTCTTTCATGCTTGTTGTATCCTTCACATGCTCACCCACCTGCCTTACAACATTTATTAGCCACTATAGTTCACATGCTTTCTCTCTTTTACTCTCATTCACACATTGAGGGCAACGTGTATCGGTGTATGCTGCTTATTCTTTTTCAGTTAATACAGTAGCTAAAGTCAATTCAATAATGAAGTTCTATGTTGGTGTATATATTGTTATAGTCAATATCTATTCATCATGGCCTTGGCTGAGCTCGTTTATATTTACTACTTTGCCTGATGCGATATGATTATGCCTGCTGCTATTCTGCTATACCTACTGTGATTCTGATATGCTTCTTCCATACTTTTGACTTGATCTTCTGTTTTTGATCAGCTTTTGTTCTAATTCTTTTATGATCCCGTGTTTTTGTTCTGATATGCTTATGTTTTTGGTTCACAATATGTTTTATTTTTTGTTAAGTTGGCAACTGTTTTATTTTAGTTCACAATATGTCAAAATATGTTAGATTTAAACATCGGTTGATTCCTTTAGCACTTGATTAACAACCCCCCGGTTGATTTCTTTAGCACATGTGCGTAGGTACTTAGGTTCGGTATTTAGGTTCATTATTTCAAAGTTAGGAGAGAAATAACTTATTTTAGACAAGATATGACCTATATTGATCGAATCAGCCCTAAATGTGCAAACTAGGTGGATTTAAGTTTATTAGTTGAAAGTTGGGAGCGAAATAAGCCATTTTAGTCAAAATATGACCTATAATGAACAAACTAGTCTTAAATGTGCACAACTTGACCAAAGTAGGTGAGAATCAGTCTTAGAAACATTAAATTAGTCTAATGAACATGTAAAGGGTTTAACATACTTATTTCGGTTCATTAGTTGAACATTGGAAGCGAAATAAGCCATTTTAGTCAAAATGTGACCTATAATGATCAAACGAGTCTTAAATGTGCATAACTTGACCATATTGGGTGATAATGAGTCTTTGAAACATAAAACTGAGTGTATTAAAG

mRNA sequence

ATGAAGATTTCGATCGTGATATATTTGAGTCTCAAACTCTCACCAGATTGTGATATCGAGGTGGATACAAACTATGGACTATCTTGCCCTGCTCCTGACTTCGAAGAAGATTCTTTTTCTGCTACTGTAAAGGATGTCCTTTGTGAGAAGGGGATTTTTGTCATTAATGTGGTCTTAAGATCTCCATCCATAAAGGAAGTGGTTGTATCAAGGATGAGAACGGTGTACCAATACTGCACATTGCTGCACTTCTCGTCGCTCCCTGGCGTTTGCACTTAGATAAATGAGAAGGTTCAAGCTTGGGGGGAAGCCATCAAGCAAACACCTTTCAGTTTCAGTGTTCAAGCAAGCTCAAGTACACCTCACACGTTATATGGAAGAAAACCTCACCGAGCCAGCTACTAATTTCGGGTAATTAATAATGATTTTGTGGCATTCAAAAGTTGACTAGTTCAGCCACATCTTACTTTTTCTTTCATGCTTGTTGTATCCTTCACATGCTCACCCACCTGCCTTACAACATTTATTAGCCACTATAGTTCACATGCTTTCTCTCTTTTACTCTCATTCACACATTGAGGGCAACGTGTATCGGTGTATGCTGCTTATTCTTTTTCAGTTAATACAGTAGCTAAAGTCAATTCAATAATGAAGTTCTATGTTGGTGTATATATTGTTATAGTCAATATCTATTCATCATGGCCTTGGCTGAGCTCGTTTATATTTACTACTTTGCCTGATGCGATATGATTATGCCTGCTGCTATTCTGCTATACCTACTGTGATTCTGATATGCTTCTTCCATACTTTTGACTTGATCTTCTGTTTTTGATCAGCTTTTGTTCTAATTCTTTTATGATCCCGTGTTTTTGTTCTGATATGCTTATGTTTTTGGTTCACAATATGTTTTATTTTTTGTTAAGTTGGCAACTGTTTTATTTTAGTTCACAATATGTCAAAATATGTTAGATTTAAACATCGGTTGATTCCTTTAGCACTTGATTAACAACCCCCCGGTTGATTTCTTTAGCACATGTGCGTAGGTACTTAGGTTCGGTATTTAGGTTCATTATTTCAAAGTTAGGAGAGAAATAACTTATTTTAGACAAGATATGACCTATATTGATCGAATCAGCCCTAAATGTGCAAACTAGGTGGATTTAAGTTTATTAGTTGAAAGTTGGGAGCGAAATAAGCCATTTTAGTCAAAATATGACCTATAATGAACAAACTAGTCTTAAATGTGCACAACTTGACCAAAGTAGGTGAGAATCAGTCTTAGAAACATTAAATTAGTCTAATGAACATGTAAAGGGTTTAACATACTTATTTCGGTTCATTAGTTGAACATTGGAAGCGAAATAAGCCATTTTAGTCAAAATGTGACCTATAATGATCAAACGAGTCTTAAATGTGCATAACTTGACCATATTGGGTGATAATGAGTCTTTGAAACATAAAACTGAGTGTATTAAAG

Coding sequence (CDS)

ATGAAGATTTCGATCGTGATATATTTGAGTCTCAAACTCTCACCAGATTGTGATATCGAGGTGGATACAAACTATGGACTATCTTGCCCTGCTCCTGACTTCGAAGAAGATTCTTTTTCTGCTACTGTAAAGGATGTCCTTTGTGAGAAGGGGATTTTTGTCATTAATGTGGTCTTAAGATCTCCATCCATAAAGGAAGTGGTTGTATCAAGGATGAGAACGGTGTACCAATACTGCACATTGCTGCACTTCTCGTCGCTCCCTGGCGTTTGCACTTAG

Protein sequence

MKISIVIYLSLKLSPDCDIEVDTNYGLSCPAPDFEEDSFSATVKDVLCEKGIFVINVVLRSPSIKEVVVSRMRTVYQYCTLLHFSSLPGVCT
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo12308.1Spo12308.1mRNA


Homology
[Close]
BLAST of Spo12308.1 vs. NCBI nr
Match: gi|902235557|gb|KNA23972.1| (hypothetical protein SOVF_019750, partial [Spinacia oleracea])

HSP 1 Score: 87.0 bits (214), Expect = 1.800e-14
Identity = 45/63 (71.43%), Postives = 52/63 (82.54%), Query Frame = 1 

		  

Query: 22  DTNYGLSCPAPDFEEDSFSATVKDVLCEKGIFVINVVLRSPSIKEVVVSRMRTVYQ--YC 81
           D++ GLSCPA DF EDSF ATVKDVL E+G+FVIN+V RSPSIKEV+VSRMRTV+   YC
Sbjct: 413 DSSSGLSCPAADFVEDSFFATVKDVLSEQGLFVINLVSRSPSIKEVIVSRMRTVFSHLYC 472

Query: 82  TLL 83
             L
Sbjct: 473 LQL 475
[Close]
BLAST of Spo12308.1 vs. NCBI nr
Match: gi|731325247|ref|XP_010673413.1| (PREDICTED: methyltransferase-like protein 13 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 85.1 bits (209), Expect = 6.900e-14
Identity = 40/57 (70.18%), Postives = 50/57 (87.72%), Query Frame = 1 

		  

Query: 22  DTNYGLSCPAPDFEEDSFSATVKDVLCEKGIFVINVVLRSPSIKEVVVSRMRTVYQY 79
           D++ GLSCPA DF EDSF ATVKDVL E+G+F+IN+V RSPSIKE+V+SRMRTV+ +
Sbjct: 656 DSSSGLSCPAADFVEDSFFATVKDVLSEQGLFIINLVSRSPSIKEMVISRMRTVFSH 712
[Close]
BLAST of Spo12308.1 vs. NCBI nr
Match: gi|255554026|ref|XP_002518053.1| (PREDICTED: methyltransferase-like protein 13 isoform X1 [Ricinus communis])

HSP 1 Score: 72.8 bits (177), Expect = 3.600e-10
Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 1 

		  

Query: 14  SPDCDIEV------DTNYGLSCPAPDFEEDSFSATVKDVLCEKGIFVINVVLRSPSIKEV 73
           SP  D+ +      D++ G++CPA DF E+SF  TVKD L EKG+FV+N+V RS +IK++
Sbjct: 630 SPGIDVLIIDVDSSDSSSGMTCPAADFVEESFLLTVKDSLSEKGLFVVNLVSRSSAIKDM 689

Query: 74  VVSRMRTVYQY 79
           V+SRM+TV+ +
Sbjct: 690 VISRMKTVFSH 700
[Close]
BLAST of Spo12308.1 vs. NCBI nr
Match: gi|1000968384|ref|XP_015574126.1| (PREDICTED: methyltransferase-like protein 13 isoform X2 [Ricinus communis])

HSP 1 Score: 71.6 bits (174), Expect = 7.900e-10
Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 1 

		  

Query: 14  SPDCDIEV------DTNYGLSCPAPDFEEDSFSATVKDVLCEKGIFVINVVLRSPSIKEV 73
           SP  D+ +      D++ G++CPA DF E+SF  TVKD L EKG+FV+N+V RS +IK++
Sbjct: 630 SPGIDVLIIDVDSSDSSSGMTCPAADFVEESFLLTVKDSLSEKGLFVVNLVSRSSAIKDM 689

Query: 74  VVSRMRTVYQY 79
           V+SRM+TV ++
Sbjct: 690 VISRMKTVLKH 700
[Close]
BLAST of Spo12308.1 vs. NCBI nr
Match: gi|743904487|ref|XP_011045618.1| (PREDICTED: methyltransferase-like protein 13 [Populus euphratica])

HSP 1 Score: 71.2 bits (173), Expect = 1.000e-9
Identity = 28/57 (49.12%), Postives = 46/57 (80.70%), Query Frame = 1 

		  

Query: 22  DTNYGLSCPAPDFEEDSFSATVKDVLCEKGIFVINVVLRSPSIKEVVVSRMRTVYQY 79
           D++ G++CPA DF E+SF  TVKD L E+G+F++N+V RSP++K+ ++SRM+ V+ +
Sbjct: 660 DSSSGMACPAADFVEESFLLTVKDTLSEQGLFIVNLVSRSPAVKDTIISRMKAVFNH 716
[Close]
BLAST of Spo12308.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RYM5_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_019750 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.300e-14
Identity = 45/63 (71.43%), Postives = 52/63 (82.54%), Query Frame = 1 

		  

Query: 22  DTNYGLSCPAPDFEEDSFSATVKDVLCEKGIFVINVVLRSPSIKEVVVSRMRTVYQ--YC 81
           D++ GLSCPA DF EDSF ATVKDVL E+G+FVIN+V RSPSIKEV+VSRMRTV+   YC
Sbjct: 413 DSSSGLSCPAADFVEDSFFATVKDVLSEQGLFVINLVSRSPSIKEVIVSRMRTVFSHLYC 472

Query: 82  TLL 83
             L
Sbjct: 473 LQL 475
[Close]
BLAST of Spo12308.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CSA1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g065760 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.800e-14
Identity = 40/57 (70.18%), Postives = 50/57 (87.72%), Query Frame = 1 

		  

Query: 22  DTNYGLSCPAPDFEEDSFSATVKDVLCEKGIFVINVVLRSPSIKEVVVSRMRTVYQY 79
           D++ GLSCPA DF EDSF ATVKDVL E+G+F+IN+V RSPSIKE+V+SRMRTV+ +
Sbjct: 656 DSSSGLSCPAADFVEDSFFATVKDVLSEQGLFIINLVSRSPSIKEMVISRMRTVFSH 712
[Close]
BLAST of Spo12308.1 vs. UniProtKB/TrEMBL
Match: B9RWD4_RICCO (S-adenosylmethionine-dependent methyltransferase, putative OS=Ricinus communis GN=RCOM_1018080 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.500e-10
Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 1 

		  

Query: 14  SPDCDIEV------DTNYGLSCPAPDFEEDSFSATVKDVLCEKGIFVINVVLRSPSIKEV 73
           SP  D+ +      D++ G++CPA DF E+SF  TVKD L EKG+FV+N+V RS +IK++
Sbjct: 630 SPGIDVLIIDVDSSDSSSGMTCPAADFVEESFLLTVKDSLSEKGLFVVNLVSRSSAIKDM 689

Query: 74  VVSRMRTVYQY 79
           V+SRM+TV+ +
Sbjct: 690 VISRMKTVFSH 700
[Close]
BLAST of Spo12308.1 vs. UniProtKB/TrEMBL
Match: B9GFU7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s32510g PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 7.200e-10
Identity = 28/57 (49.12%), Postives = 46/57 (80.70%), Query Frame = 1 

		  

Query: 22  DTNYGLSCPAPDFEEDSFSATVKDVLCEKGIFVINVVLRSPSIKEVVVSRMRTVYQY 79
           D++ G++CPA DF E+SF  TVKD L E+G+F++N+V RSP++K+ ++SRM+ V+ +
Sbjct: 662 DSSSGMACPAADFVEESFLLTVKDTLSEQGLFIVNLVSRSPAVKDTIISRMKAVFNH 718
[Close]
BLAST of Spo12308.1 vs. UniProtKB/TrEMBL
Match: A0A0B0PR92_GOSAR (Methyltransferase-like protein 13 OS=Gossypium arboreum GN=F383_03345 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.400e-10
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 1 

		  

Query: 22  DTNYGLSCPAPDFEEDSFSATVKDVLCEKGIFVINVVLRSPSIKEVVVSRMRTVYQY 79
           D++ GL CPA DF E+SF   VKD L E+G+FVIN+V RSP+IK+ VVSRM+ V+ +
Sbjct: 649 DSSSGLRCPAADFVEESFLQNVKDTLSEQGLFVINLVSRSPAIKDAVVSRMKEVFSH 705
[Close]
BLAST of Spo12308.1 vs. TAIR (Arabidopsis)
Match: AT2G31740.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein)

HSP 1 Score: 62.8 bits (151), Expect = 1.300e-10
Identity = 27/57 (47.37%), Postives = 44/57 (77.19%), Query Frame = 1 

		  

Query: 22  DTNYGLSCPAPDFEEDSFSATVKDVLCEKGIFVINVVLRSPSIKEVVVSRMRTVYQY 79
           D++ GL+CPA DF E++F  +VK  L + G+F++N+V RS S+K++VVSRM+ V+ +
Sbjct: 641 DSSGGLTCPASDFIEETFLLSVKQALPQHGLFIVNLVTRSQSVKDMVVSRMKKVFDH 697
The following BLAST results are available for this feature:
BLAST of Spo12308.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902235557|gb|KNA23972.1|1.8e-1471.4hypothetical protein SOVF_0197... [more]
gi|731325247|ref|XP_010673413.1|6.9e-1470.1PREDICTED: methyltransferase-l... [more]
gi|255554026|ref|XP_002518053.1|3.6e-1049.3PREDICTED: methyltransferase-l... [more]
gi|1000968384|ref|XP_015574126.1|7.9e-1049.3PREDICTED: methyltransferase-l... [more]
gi|743904487|ref|XP_011045618.1|1.0e-949.1PREDICTED: methyltransferase-l... [more]
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BLAST of Spo12308.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RYM5_SPIOL1.3e-1471.4Uncharacterized protein (Fragm... [more]
A0A0J8CSA1_BETVU4.8e-1470.1Uncharacterized protein OS=Bet... [more]
B9RWD4_RICCO2.5e-1049.3S-adenosylmethionine-dependent... [more]
B9GFU7_POPTR7.2e-1049.1Uncharacterized protein OS=Pop... [more]
A0A0B0PR92_GOSAR9.4e-1057.8Methyltransferase-like protein... [more]
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BLAST of Spo12308.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12308.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT2G31740.11.3e-1047.3S-adenosyl-L-methionine-depend... [more]
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032259 methylation
molecular_function GO:0008168 methyltransferase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo199690.68Barchart | Table