Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CTCGGGATCGAACTTGCCTAAATTAAATAAACATTAACCTAAACATAAATAGATTAATACTTGATTCGGTTCGGTTCGATTCGACTTGGCTCGTTTGCACCCCTTGTATCTCATTCTCTTGGGTTGTTGTTCTCCTGTGTCCGTATGGCATCTGTATAACTGTATTGTACATTTGTACACTACTCCGTACTACTCTAATACGGAGTAACCAGTTCGGTACCATTTCAGCAACATCAGTATATTTCTGTTTAGGGTCTCCTGCTATCAGAGCGGCGATTTCCCGATAGCTACGTCATTCCTGATTCCCATGCTTCTCAAGTAATTCTCTCTCTCCTATTTCTCAGATCTTCTTTGATAATATGTATGAAATTTGTGAATTCATTTGAAATTTCGATTTATGATCCACATAATTTTTTGATTAATTGGTTCCAATATGATTATGATAATTTTTGAGCTTTCTACCTAATTGTTGATGGCTGTTCAACTCGGATCTAAGGATCAAAATTTATACTTTTGACTTGCAAATATTCATGTTGTTTTGCATTTTTGTGGAATACTTTGATCAGAAGTAGTAATGAATTACAGTTATCATTTGTGATTTTGGAAAATTACCAATTTTTTTCATCACCCGGCCTGATTTTTATCTGATTTGAAGCATTAGTTCAATGTAGTGGTGTATGTGTTTATCGAAATTTGTCGGTGTGGCGACTGGCGAATATACTATATGATGATCATACAATATTCAAATTGATGCTGCAAATATGTAATTAGATGTTTACTAGATACAAAATGACAGAATGATGGTTGGTTAGTAATGAATTACATATCGGTTACTAGGTGCTTCAATATTGATTATTGTTATTCGAAGGGCGTTCACCGACATCGATGTATTGGGTAGCAGTTAAGCACTTGCTCATGTAAATGGAGCTTGGGGTGATTGAGTATTTTGGCTTCCAGTACATTTTTTTCTCAACTTTAGCCGAGTGAGTCCATAGTTTGTTGTCTCTTATGTCATTCAACGTTATACACTTACCCTATCAAAGTATCAATTACTCAATGCTATAAGTACTCTTAAAGTGACACTCGTATATCACCAAAAACTAATTCAAAGATGATGGGAACGGTTTATGATGGTAAAGTTAGGTTCTTGTACGTGAATTGGGCTTCGATCCAATTCAGAGAGTGTTAAGTCATGTGCCCTTGAAAGTTAAAAGAGTTTTTGAATATGCGTATCTTACCTATGTGCTTATGTGATTTTTCTTCTTGAGGATTCTTCTCTTCTTTTTGGGAACTTTGTGTTTACTGTGCAATTTATTTATAGTTCCTATTTTGTCTGTTTGATGTGCTTAGGCCATGAGTGTGGAAGGACAAGGCGGATATTAACACTTCCTCACATTCTGACAAGTGTAAGAGAAGTTTCAAGCTAACTATCAAGAAAGGCAGCGAAAATGTTTTCTCTGATGTATGGGTTCTGGAAGTACATGTTCAGCAAGACGGAATTTCATGTTCTTATTCTTGGTATTGACAAGGCTGGGAAAACGGTAGTTTTTCCCCCCTCTGCTAGATTTATAGCTCTATGATTATTTATTTATTTATTTTATATACGAGCTAGATTAAGGAAATAAGGACCACACTAAATTTCCTACGGAATAGTGTTTTATTGATGATCACAATGTTATTTACTGTGTGCTTCGATTGTTGGAAGTTTTGCTTCTTCTAGTGTTGATCATATGTGGAATATGGATGTTGTTTATCTTGTTAAGGTACAGGTACTGGTTTACAACAGTGTCATTGCTTGTTATCAAAGTATATATGTCCTTGAATTTAAGACCAGATCTTTCTACCTTTGAGAAATTAGTTTTCCCCCTAGAAAACAAAAAAACTTGGCCTCTTAAGTCCTAACTCTTCCCATGTTGGGCTTGGACTTGAGGTCCAATGCACAAATACTCTGTCTACTGTAAGGCTGGCAACGTGGGTCATGGGATTGAACCGAAATGGTTGGAGGGATAGGATATGTTGGAGCTTTCACTTGATTCCTAATCTGACACAAGTATATGTTTATGTTGGCTGTTTTTTGTGTTACTAATCTGGTATTAATTTCTCATATTTCACCCAATAGTTTTGAATTTATCTTTATTGATTTACCATACAAAAGAATTTTTTTTATCAAAGATCTTCTCAGAAGTTCATAACACTGATAAATGATAACACTATCTTGCAGACTTTACTGGAAAAATTGAAAGAACTGTACTTAAACTTGGAAGGCCTTCCACCCGATCGAATTGTTCCAACTGTGGGGCTCAATATAGGTCGCATTGAAGTTGGAAACGCCAAACTTGTGTTCTGGGACTTAGGTGGCCAGGTATGTAGATCAGTTTGTGCCTTTGTGCCAAATGCTGCACTAGTTGCTTCATTTAAAAGTATTGTTCTAAATGATTTGTTCTATATCCCGTTGAGAGTTCCATAATGTATTGTTTTGTATATTTATACCCAAAGATCGCCTTGAAGTCCTCTTGTACAATTAAATGTGATGGCATCAGGTCTCAAGTGTGCTTCATTTTTCTTCTCAAAGTTTTGGTTCTTCATGAACTTTGATATGAGACACTAATAAAATAATTTATGAAATACGCATGTGTTAGAAGGCTCAGAACTTAGAAGCTAAAATTGATGATATGATGGATAATTTTCAACTTACTGTGGGTGTCTTTAGAATTTCAGTTCCATTTCTGAGTCAGGGTCTGTTCTCTTTACCTGAAATGACAAAATTGGTAATTATCTTCATGAAATAAAAGACCTGGTCTGATCTGAAACAAACAAGACTGAATAATAATTTTCTGAAATAAGGTGAACATAATACAGCCTTAGGCCCTGTTCTTTAGAGCTGAGCTGAACTGAACTGAACTGAATGCTCCTTAACTGAACCGAACTGAACTGAATGCTCCTGAACTGAACTGAATGCTCCTGAACTGAACTGAACTTAACTTAACTTAACTTAACTAAACTGAACTGAACTGAACTTTACTTAACATAATATATTACCGAAATAAATAATAAATAATAAATAATAAATAATAAATAATAAATAATAAATAATAAATAATAAATAATAAATAATAAATAATAAATAATAAATAATAAATAATAATAAATAATAAGTAATATAATAATATAATAATATAAATATAAATAATAAGTAATACAATAATATAAATAATAATATAATTAATATTAATAATAATAATAATAATATAATTAATAATAATAATAATTATTATTATTAAAATAAATTAAATTAAATTGAATTGAATTGAATTAAACTGAATTAAACTGAACTGAATTTAATGCTCCTGAACTGAATGCTCCTGAACTGAACTGAACTGAACTAAACTGAATGCTCCTGAACTGAACTGAACTGAACTGAACTGCCAAATAAGTCCTGAAGCTGAAATTAAGCCAAAAAGAACAGGGCCTTAATGCTTTAAGTTTCAGCTGTATCTGAACATATTGTACTCCTTCCGTCCCTTTTTACTTGCCCCATCACTATTTGCACATGATTTGGTAAGAATGAAATAGTAGAGTGAAGAAAGTGGGGAGTGGATGGTGGGACCCAACTCAAGAGAAAAAGTAGAGAGGATAAATTTAGAAAAAAGGAAATGGGGCAAGTAAAAAGCGACGGAGGTAGTAATTGGATGCAAGTTAGTTATACGGCTACTGTGATGCCAAATTCTAGGGTCAACTCAGCCTGATTGGACTTAGTCTGAAGCTCAAAGAGCCAAAATTTCTTGGCTTAACTTGGTCCAGTGCTCATTTTTCCTGACACAGCAGAGTTCACCTCACCTCAACCTTGAGTAATTTAGAATTTTGCTTTCTTTTGTTACCCTTTTTCCTTTTTCTTCTAATATTTTCTGGTTGGAGAGTTTTGGAAAGGAAATATACTGAAAACATAAGTTTATTTGCAGTGCAAGAAGTTGCACAATAATACAAAATTTTAATGTTACTTCACAAGTGTTAAATGTTCAAGAGAGGAAACAGGTTTTGATAACCAAACAGCATAAACTCCTGATTGGAGAGCTGACAGGCTTGCCAATTAGCAGCTGAACTTGTTTTGAATTTAAACTTGAATTAAGCTTGGGCAGTTGGCTTTAATAAGCCCATTTTTATCTCTTTTTCTTTGAAATCGGCTCAACTCCTTTTTTCAATGGGTTATATTTGCTATAGAAAATTTCATGTCCAAGGGAGTTGATGAGAGAAAAAATGGATGAGATGTGGGTGCAATATTTAGTTTCTTTTAGCGATGAGCCTCATCCCCAGCACCTTATTATGTTGTACAGGATCTTTATTTTACCCCTTTAACCTTGCAATGACCCCCCCCCCCCCAAAAGAAAAATGTTGTTGATAGGCTTTGAGGAGCTTATGAGAATATGAGCCTACTTTTAAGTTGTGTTGTTGATCACACTATCTTTTATTATGGCAGCCTGGCCTTCGTTCAATATGGGAGAAATATTACGAAGAAGCCCATGCTGTCATTTATGTTGTCGATGCAAATGCACCAACTCGTTTTGAAGATTCAAAATCTGCACTAGGTTAGTTTACTGTAGTACAATATTAGGTTTGGGTTTGTTTATATGCCAGAATAAACATTGCCCACTAACAAATTCAAATATCTTGCAGAAAAGGTTCTCCGACACCATGATGTGCAAGGTGCTCCTCTTCTGATACTAGCTAACAAGCAGGTGTGTATGGGATTTCTGTATCGCTCTTTTAAGTTTTGTGCGGGATTTGTAGATTTTTTTTGGAGGAATATGCGGAGCAATTTAGTTTTTCATTTCTTTCATGCATTAAACTAAAGTTTTAAGTCTTTTAACCATTTTGCTATTGCCTGTCATTATACACGGATACACTTTCTGTTTTTTTAACCGAGATACTTCGCGTGTCATAATGCCCCCTTGATGGTTTTCGTAGGTTCTCTGTATGTGTAGTTTAGTATCCACATCTACGTCTATCTATATGTACACGCACATACAGGGATATCTAGAATGAGAAATATTATCACACAGTGTTAAACCTGTAATAAAAATCCTATCTTTTTCCAGGTTCGTAACAGCTAAAAAGTTTAGCAACCATCCATTGCCGGAAAAAATAGTTTTTTTAGGATGCACAGTGGCCTTGTCCCTTGTGGTAGGCTGGAAGCTACAAGTGTTTTCTCATTTCTCATCCTGGTCATTTATATACGGTGGTTTGATGGGGAACTAGTGAAAGGTGGTTTATGCTTCTATCTGCCTACTAATACTAATATTACATTTTTTAATCTTCTCCCCACCCCCTAAAACAGGACCTTTCTTCCGCAGTTTCATCTGAAGAAGTAGCTCGTTACCTGGACCTGAAAAAGCTGGATGAAAGGCTATATATGTTTGAAGCTGTTTCGGGATTTGATGGGTAAGTTCCAGTTCTAACACCTCCCATCTTGAGCATTTAATGTTATGATTGATGTTCCAGTTCCTCCGTAGTCCCCTCCCATAATTCTTCATGATGGAAATCTTGTGTTACCGGCTTGCTCTACCCTTTGTTCTTCTGTAGTTCTATGTTTCAATCAATTTTTCTTATAAATTGGTTAAGTAGTGGTTGGTTGAGTATTTTTTTCTTCTTGATAGGGCACAATTTTCCTTCTTTTTACAACTCTTGCATGTTTCACCCATCTGTTTATGTTTCGGGGTATTTGGACTTCTCTTTGAATTATTGCTTGTATGGCCACATGGAATTAACACAGCGTGAATTGGGTTTGTTTTATTTGCAGTAGAGGGATAAAGGGAAGTGTAGATTGGCTTGTGGATGCTATGGAAAGAAGTAAAAGGTCTGAAATGCTGAGAAGCCGTACACCTGCTGCTTGA CTCGGGATCGAACTTGCCTAAATTAAATAAACATTAACCTAAACATAAATAGATTAATACTTGATTCGGTTCGGTTCGATTCGACTTGGCTCGTTTGCACCCCTTGTATCTCATTCTCTTGGGTTGTTGTTCTCCTGTGTCCGTATGGCATCTGTATAACTGTATTGTACATTTGTACACTACTCCGTACTACTCTAATACGGAGTAACCAGTTCGGTACCATTTCAGCAACATCAGTATATTTCTGTTTAGGGTCTCCTGCTATCAGAGCGGCGATTTCCCGATAGCTACGTCATTCCTGATTCCCATGCTTCTCAAGCCATGAGTGTGGAAGGACAAGGCGGATATTAACACTTCCTCACATTCTGACAAGTGTAAGAGAAGTTTCAAGCTAACTATCAAGAAAGGCAGCGAAAATGTTTTCTCTGATGTATGGGTTCTGGAAGTACATGTTCAGCAAGACGGAATTTCATGTTCTTATTCTTGGTATTGACAAGGCTGGGAAAACGACTTTACTGGAAAAATTGAAAGAACTGTACTTAAACTTGGAAGGCCTTCCACCCGATCGAATTGTTCCAACTGTGGGGCTCAATATAGGTCGCATTGAAGTTGGAAACGCCAAACTTGTGTTCTGGGACTTAGGTGGCCAGCCTGGCCTTCGTTCAATATGGGAGAAATATTACGAAGAAGCCCATGCTGTCATTTATGTTGTCGATGCAAATGCACCAACTCGTTTTGAAGATTCAAAATCTGCACTAGAAAAGGTTCTCCGACACCATGATGTGCAAGGTGCTCCTCTTCTGATACTAGCTAACAAGCAGGACCTTTCTTCCGCAGTTTCATCTGAAGAAGTAGCTCGTTACCTGGACCTGAAAAAGCTGGATGAAAGGCTATATATGTTTGAAGCTGTTTCGGGATTTGATGGTAGAGGGATAAAGGGAAGTGTAGATTGGCTTGTGGATGCTATGGAAAGAAGTAAAAGGTCTGAAATGCTGAGAAGCCGTACACCTGCTGCTTGA ATGTTTTCTCTGATGTATGGGTTCTGGAAGTACATGTTCAGCAAGACGGAATTTCATGTTCTTATTCTTGGTATTGACAAGGCTGGGAAAACGACTTTACTGGAAAAATTGAAAGAACTGTACTTAAACTTGGAAGGCCTTCCACCCGATCGAATTGTTCCAACTGTGGGGCTCAATATAGGTCGCATTGAAGTTGGAAACGCCAAACTTGTGTTCTGGGACTTAGGTGGCCAGCCTGGCCTTCGTTCAATATGGGAGAAATATTACGAAGAAGCCCATGCTGTCATTTATGTTGTCGATGCAAATGCACCAACTCGTTTTGAAGATTCAAAATCTGCACTAGAAAAGGTTCTCCGACACCATGATGTGCAAGGTGCTCCTCTTCTGATACTAGCTAACAAGCAGGACCTTTCTTCCGCAGTTTCATCTGAAGAAGTAGCTCGTTACCTGGACCTGAAAAAGCTGGATGAAAGGCTATATATGTTTGAAGCTGTTTCGGGATTTGATGGTAGAGGGATAAAGGGAAGTGTAGATTGGCTTGTGGATGCTATGGAAAGAAGTAAAAGGTCTGAAATGCTGAGAAGCCGTACACCTGCTGCTTGA MFSLMYGFWKYMFSKTEFHVLILGIDKAGKTTLLEKLKELYLNLEGLPPDRIVPTVGLNIGRIEVGNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVVDANAPTRFEDSKSALEKVLRHHDVQGAPLLILANKQDLSSAVSSEEVARYLDLKKLDERLYMFEAVSGFDGRGIKGSVDWLVDAMERSKRSEMLRSRTPAA Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo12317.1 vs. NCBI nr
Match: gi|902213210|gb|KNA17200.1| (hypothetical protein SOVF_082260 [Spinacia oleracea]) HSP 1 Score: 401.4 bits (1030), Expect = 9.500e-109 Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1
BLAST of Spo12317.1 vs. NCBI nr
Match: gi|731357972|ref|XP_010690494.1| (PREDICTED: ADP-ribosylation factor-related protein 1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 384.8 bits (987), Expect = 9.200e-104 Identity = 190/199 (95.48%), Postives = 196/199 (98.49%), Query Frame = 1
BLAST of Spo12317.1 vs. NCBI nr
Match: gi|470144932|ref|XP_004308100.1| (PREDICTED: ADP-ribosylation factor-related protein 1 [Fragaria vesca subsp. vesca]) HSP 1 Score: 349.4 bits (895), Expect = 4.300e-93 Identity = 170/196 (86.73%), Postives = 182/196 (92.86%), Query Frame = 1
BLAST of Spo12317.1 vs. NCBI nr
Match: gi|645257115|ref|XP_008234264.1| (PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]) HSP 1 Score: 347.1 bits (889), Expect = 2.100e-92 Identity = 168/199 (84.42%), Postives = 182/199 (91.46%), Query Frame = 1
BLAST of Spo12317.1 vs. NCBI nr
Match: gi|596006256|ref|XP_007218423.1| (hypothetical protein PRUPE_ppa011585mg [Prunus persica]) HSP 1 Score: 346.3 bits (887), Expect = 3.600e-92 Identity = 168/199 (84.42%), Postives = 181/199 (90.95%), Query Frame = 1
BLAST of Spo12317.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCM2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_082260 PE=3 SV=1) HSP 1 Score: 401.4 bits (1030), Expect = 6.600e-109 Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1
BLAST of Spo12317.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BNA9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g215040 PE=3 SV=1) HSP 1 Score: 384.8 bits (987), Expect = 6.400e-104 Identity = 190/199 (95.48%), Postives = 196/199 (98.49%), Query Frame = 1
BLAST of Spo12317.1 vs. UniProtKB/TrEMBL
Match: M5X0L7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011585mg PE=3 SV=1) HSP 1 Score: 346.3 bits (887), Expect = 2.500e-92 Identity = 168/199 (84.42%), Postives = 181/199 (90.95%), Query Frame = 1
BLAST of Spo12317.1 vs. UniProtKB/TrEMBL
Match: A0A068UAD6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00020188001 PE=3 SV=1) HSP 1 Score: 345.5 bits (885), Expect = 4.300e-92 Identity = 168/196 (85.71%), Postives = 180/196 (91.84%), Query Frame = 1
BLAST of Spo12317.1 vs. UniProtKB/TrEMBL
Match: A0A0A0L9R1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G181980 PE=3 SV=1) HSP 1 Score: 342.4 bits (877), Expect = 3.600e-91 Identity = 166/196 (84.69%), Postives = 182/196 (92.86%), Query Frame = 1
BLAST of Spo12317.1 vs. ExPASy Swiss-Prot
Match: ARFRP_MOUSE (ADP-ribosylation factor-related protein 1 OS=Mus musculus GN=Arfrp1 PE=1 SV=2) HSP 1 Score: 172.6 bits (436), Expect = 4.500e-42 Identity = 83/190 (43.68%), Postives = 126/190 (66.32%), Query Frame = 1
BLAST of Spo12317.1 vs. ExPASy Swiss-Prot
Match: ARFRP_BOVIN (ADP-ribosylation factor-related protein 1 OS=Bos taurus GN=ARFRP1 PE=2 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 4.500e-42 Identity = 82/190 (43.16%), Postives = 124/190 (65.26%), Query Frame = 1
BLAST of Spo12317.1 vs. ExPASy Swiss-Prot
Match: ARFRP_RAT (ADP-ribosylation factor-related protein 1 OS=Rattus norvegicus GN=Arfrp1 PE=2 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 4.500e-42 Identity = 83/190 (43.68%), Postives = 126/190 (66.32%), Query Frame = 1
BLAST of Spo12317.1 vs. ExPASy Swiss-Prot
Match: ARFRP_PONAB (ADP-ribosylation factor-related protein 1 OS=Pongo abelii GN=ARFRP1 PE=2 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 1.000e-41 Identity = 82/190 (43.16%), Postives = 124/190 (65.26%), Query Frame = 1
BLAST of Spo12317.1 vs. ExPASy Swiss-Prot
Match: ARFRP_HUMAN (ADP-ribosylation factor-related protein 1 OS=Homo sapiens GN=ARFRP1 PE=1 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 1.000e-41 Identity = 82/190 (43.16%), Postives = 124/190 (65.26%), Query Frame = 1
BLAST of Spo12317.1 vs. TAIR (Arabidopsis)
Match: AT5G52210.1 (GTP-binding protein 1) HSP 1 Score: 326.6 bits (836), Expect = 1.000e-89 Identity = 159/196 (81.12%), Postives = 177/196 (90.31%), Query Frame = 1
BLAST of Spo12317.1 vs. TAIR (Arabidopsis)
Match: AT5G14670.1 (ADP-ribosylation factor A1B) HSP 1 Score: 122.9 bits (307), Expect = 2.300e-28 Identity = 58/171 (33.92%), Postives = 98/171 (57.31%), Query Frame = 1
BLAST of Spo12317.1 vs. TAIR (Arabidopsis)
Match: AT1G23490.1 (ADP-ribosylation factor 1) HSP 1 Score: 122.9 bits (307), Expect = 2.300e-28 Identity = 58/171 (33.92%), Postives = 98/171 (57.31%), Query Frame = 1
BLAST of Spo12317.1 vs. TAIR (Arabidopsis)
Match: AT1G10630.1 (ADP-ribosylation factor A1F) HSP 1 Score: 122.9 bits (307), Expect = 2.300e-28 Identity = 58/171 (33.92%), Postives = 98/171 (57.31%), Query Frame = 1
BLAST of Spo12317.1 vs. TAIR (Arabidopsis)
Match: AT3G62290.1 (ADP-ribosylation factor A1E) HSP 1 Score: 122.9 bits (307), Expect = 2.300e-28 Identity = 58/171 (33.92%), Postives = 98/171 (57.31%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo12317.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo12317.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo12317.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo12317.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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