Spo12325 (gene)

Overview
NameSpo12325
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01190 : 64292 .. 66456 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAAATGAGGTGTTCAACCGCCGCTCTCCCCTGCTGTTTCAACCTCCTGCAACAACTGCCTCTCTCAACGCTGCCACCGAACCACAACGTCTATTAGGTTTGTACCTTGATTTTTGTTTAACATTTTTTTTTCCAACTATGAAACCTAGGGATTATGCTCTATTGAAATTTGTAAAGAGCAATCCACCCGCATTATGAATGAATTTCTCCGAGGGCATAAAATCACCATGGTTAGTATGCTTGATTTTTTTTTTTTTTTTTTTTATAATAAAAATGGCCATTTTATAGTTTATGAAGTGGTACTTTTGTGCAAGCAGGCTGAGATTCTACTAGCTAGCGGCTTGGTAATTTACAGGACTTATATTTTTTTGATTATCTTTGTCTATGAAAGGAGGAAAAGATACATTACTCTTTGACTTTAGATTGTAGTGGAGTACAAACAAAAATAGTTTATCTTTACTATAGTGAAACATACACTATTCAGTGACCTATATCTATTTGTATTTTGCAGCTTTCCTCAGCTAATATACATAACAGTTAACACCAGTATTCGGTCATTAAATTTATATTGTAAATTTGTAATAGTTCTTGATTTTTATGGATCTCAATTGACGATAGTCTCGAAGTTGGCGATACAATGATGACTGATTTATTATTTCAGGGTAAGATGTAAAATCTCCTGGGATGTATGGGCTAAACACTTGTTTGTGTAGGATGGAGGACCTTTTGACTTTAGCCATGACTCATGTGTTTGTGAAGTTTTGATTGTGTGGAAGGAGTTTTTGATTTGTGAATATAACTTATATAAGAAGGGCAGTAAGCCAGTAATAAAGTTGAATTAAACTGATTTCAATTAGATTAGATCGAATTTAAATGAAGAAGCTGAATAGAAGAAATTTTGGTCAAATTAAACTTAAACTAAATAAATTAGGTTGAATTAAATTGATACCGACTCAAGGGTAGAATTGGGGAAATAAAATTCAAGAAAGTGTGTGGAAGGGAAAACTGAAGACATCTGCTTAAAAGAACCCCAGATGAGACCCCGAGAAGGACATGTCTGGGGAAAAACCATGGTTGAACTGTTTAAAAGAACATATTATTGTGTGTTTAATCACATTGTAAGACACCGCTATGACACGGAGTAAGATAAAGAAACAGGGGGGTAAGGGAAAACTAAGAGACTAAGATATTCCATATTGGGATGGGGTATGCTTTGAATGAAAAGTAGTTCAGTGCCTTTGTTAGTACAATTCCATTCTTAATGCGTCTTGATCAAAATGCATCTAATAATTGTAAATGCCAATATAATGGTGAATGGTTTGTTGAACCTAGATTCTTGTTGGAGGCATCTTGCTCCCTTTAATTTATATGATTTCTTTTCTGATTAAAACAATTCCTTCTTACTGTTAAAAAAAGAGAGGAGAAGTTCACATATCAGTTGATCGTATTAAGCAATTTCAATCTAGAAATGGCCTCAAAATAAATTTCTAATTCAGTACATAATGAAAGATCGAAAGGTGTGGTTATTTTCTAGATGTTGTGAAACAATGGTTTCATTACTGGTTATTTGTTTTCTTTCAGATGTAACTGTTTTTTAAGCTTGGTGTCATGTAGTTTTTACACTTTATTTGCACGTCTTCACTCTTATTATTTCTAAAGGGACATGTTTATTTTTTGCAATATTGTGTTTTTTTTAGTCTATTTTGTCTTCATCGTCCATTCTTGCTTGTGCATTTGCCTTTTGTTCCTTATCTGACTTTGAAACTTAGTGTGTTTTGGTGTAGTTTGTGACGCAGAGAATAAAACTTCGGCATGGAGGTGGTAGTGGTGATAGTTGTGGGCGTGGTGGATACAATATAGACTACTCCAATCCTAACACTTCTAAAAGAGCAAATTTGAAGTTACTATTCCTACAATATTGTTATGACCGTATTGCCCCCGCCTCTCACTCTTTACTACTGGTTTGCCCTTGTAAGGAGATCATGCCACGTTCCGTCATCCCTGCTTCAGTGCTTCTCTTCTTCTTTCTTTCACCCCTCTTCCCTGTTTCAGTGCTTCAACAAACCCTAACTCTGCTCATCTTCCCCCCATCTCCTCTGGACCCACTTTCTCCCTACTGCATTGTTCTACCTTGCTACATCCATCTTCTCACCAATAACTGA

mRNA sequence

ATGATAAATGAGGTGTTCAACCGCCGCTCTCCCCTGCTGTTTCAACCTCCTGCAACAACTGCCTCTCTCAACGCTGCCACCGAACCACAACGTCTATTAGTTTATGAAGTGGTACTTTTGTGCAAGCAGGCTGAGATTCTACTAGCTAGCGGCTTGTTTGTGACGCAGAGAATAAAACTTCGGCATGGAGGTGGTAGTGGTGATAGTTGTGGGCGTGGTGGATACAATATAGACTACTCCAATCCTAACACTTCTAAAAGAGCAAATTTGAAGTTACTATTCCTACAATATTGTTATGACCGTATTGCCCCCGCCTCTCACTCTTTACTACTGGTTTGCCCTTGTAAGGAGATCATGCCACGTTCCGTCATCCCTGCTTCAGTGCTTCTCTTCTTCTTTCTTTCACCCCTCTTCCCTGTTTCAGTGCTTCAACAAACCCTAACTCTGCTCATCTTCCCCCCATCTCCTCTGGACCCACTTTCTCCCTACTGCATTGTTCTACCTTGCTACATCCATCTTCTCACCAATAACTGA

Coding sequence (CDS)

ATGATAAATGAGGTGTTCAACCGCCGCTCTCCCCTGCTGTTTCAACCTCCTGCAACAACTGCCTCTCTCAACGCTGCCACCGAACCACAACGTCTATTAGTTTATGAAGTGGTACTTTTGTGCAAGCAGGCTGAGATTCTACTAGCTAGCGGCTTGTTTGTGACGCAGAGAATAAAACTTCGGCATGGAGGTGGTAGTGGTGATAGTTGTGGGCGTGGTGGATACAATATAGACTACTCCAATCCTAACACTTCTAAAAGAGCAAATTTGAAGTTACTATTCCTACAATATTGTTATGACCGTATTGCCCCCGCCTCTCACTCTTTACTACTGGTTTGCCCTTGTAAGGAGATCATGCCACGTTCCGTCATCCCTGCTTCAGTGCTTCTCTTCTTCTTTCTTTCACCCCTCTTCCCTGTTTCAGTGCTTCAACAAACCCTAACTCTGCTCATCTTCCCCCCATCTCCTCTGGACCCACTTTCTCCCTACTGCATTGTTCTACCTTGCTACATCCATCTTCTCACCAATAACTGA

Protein sequence

MINEVFNRRSPLLFQPPATTASLNAATEPQRLLVYEVVLLCKQAEILLASGLFVTQRIKLRHGGGSGDSCGRGGYNIDYSNPNTSKRANLKLLFLQYCYDRIAPASHSLLLVCPCKEIMPRSVIPASVLLFFFLSPLFPVSVLQQTLTLLIFPPSPLDPLSPYCIVLPCYIHLLTNN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo12325.1Spo12325.1mRNA


Homology
[Close]
BLAST of Spo12325.1 vs. NCBI nr
Match: gi|902235167|gb|KNA23789.1| (hypothetical protein SOVF_021990 isoform A [Spinacia oleracea])

HSP 1 Score: 69.7 bits (169), Expect = 5.800e-9
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1 

		  

Query: 1  MINEVFNRRSPLLFQPPATTASLNAATEPQRLLV 35
          MINEVFNRRSPLLFQPPATTASLNAATEPQRLLV
Sbjct: 1  MINEVFNRRSPLLFQPPATTASLNAATEPQRLLV 34
[Close]
BLAST of Spo12325.1 vs. NCBI nr
Match: gi|902235168|gb|KNA23790.1| (hypothetical protein SOVF_021990 isoform B [Spinacia oleracea])

HSP 1 Score: 69.7 bits (169), Expect = 5.800e-9
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1 

		  

Query: 1  MINEVFNRRSPLLFQPPATTASLNAATEPQRLLV 35
          MINEVFNRRSPLLFQPPATTASLNAATEPQRLLV
Sbjct: 1  MINEVFNRRSPLLFQPPATTASLNAATEPQRLLV 34
[Close]
BLAST of Spo12325.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RW80_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_021990 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.000e-9
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1 

		  

Query: 1  MINEVFNRRSPLLFQPPATTASLNAATEPQRLLV 35
          MINEVFNRRSPLLFQPPATTASLNAATEPQRLLV
Sbjct: 1  MINEVFNRRSPLLFQPPATTASLNAATEPQRLLV 34
[Close]
BLAST of Spo12325.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RY00_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_021990 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.000e-9
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1 

		  

Query: 1  MINEVFNRRSPLLFQPPATTASLNAATEPQRLLV 35
          MINEVFNRRSPLLFQPPATTASLNAATEPQRLLV
Sbjct: 1  MINEVFNRRSPLLFQPPATTASLNAATEPQRLLV 34
The following BLAST results are available for this feature:
BLAST of Spo12325.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902235167|gb|KNA23789.1|5.8e-9100.hypothetical protein SOVF_0219... [more]
gi|902235168|gb|KNA23790.1|5.8e-9100.hypothetical protein SOVF_0219... [more]
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BLAST of Spo12325.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9RW80_SPIOL4.0e-9100.Uncharacterized protein OS=Spi... [more]
A0A0K9RY00_SPIOL4.0e-9100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo12325.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12325.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043090 amino acid import
biological_process GO:0030007 cellular potassium ion homeostasis
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0008152 metabolic process
biological_process GO:0000226 microtubule cytoskeleton organization
biological_process GO:0009651 response to salt stress
biological_process GO:0007165 signal transduction
biological_process GO:0042908 xenobiotic transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0000325 plant-type vacuole
cellular_component GO:0005774 vacuolar membrane
molecular_function GO:0005524 ATP binding
molecular_function GO:0008281 sulfonylurea receptor activity
molecular_function GO:0008559 xenobiotic transmembrane transporting ATPase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo069720.68Barchart | Table
Spo026650.65Barchart | Table