Spo12332 (gene) | SpinachBase

Overview


Name	Spo12332
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr4 : 63730875 .. 63732643 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACCGAATACTAGTGTGAATTTTTTCTCTTTTGGATTCCCTCGAAAATTCGGAATCGTTTACTTCCTCTAACCTCCTCAATGAAAGAAAATGAAACCCCTAAATCTCCATTACTGTCTCTAACCTCCCCAGTCTCCCACGCACTCTTCATCTCTCCGATTCCTCAACATTCAGCAACCCTAAATCCTTCTTTCATTCTTCGCACTCTTGTAAGATTCTACTTGAATTTCGCTGGTAAGTTTTCCCCATATGAATATCTTTCGTAATATTTTCCATATGAATTTCTCTGATGAATTGTTTTGGAGTATCAATTTTACCTTTAATAATTGATTGCACTTTGTATCGATCTCTATCGAATTTTGCTGATAATTCATTGCTAGTTTGTTTTTTATTTTTCGATTTGAATTGTTGTCAAATTTTATTTTATCTTTCTTACATTTCCAGCAATTGATATAGGTGTTGAAAAATCGCATTCTTCAATCCCTAAAAATTGGAAAAATCTTCTTTTGTCGACAGGGATGACTCAATTTCCTAGACTAGAAAAATTGGAAGTGCTTGACATAAGTTTTAATAGTCTGAGAATGTTGCCATCAGTTGTTGCGCTTCCCTTGAACTTACAGTAATGTTGTAATCTCATCAACAATCTTGTGTCCAGAGTCCTCAATGCCCCTAATACCAAACAAAAATCTTGACTTTTGTCATCAGGCTTCTTTCTTTTGACATGAAAAACCCCGATTTAAACTTGTGTAAGTCATTGTATTTTTTGTCCTTGTCTGAATTTATTTTCCTTTCATTTGAACTTTTGTCATCGGTTCTTGAATTGTACTTCAATAAACCTGATCTAATTGGAAATAACCAGGCCTCAATATGTTGCCTGGATTTGCTGATGATAGTAGTTATGAGAAATATTTCATCAATAACAGGCCTAGACGCAAGGCTTTTACCCGGGTTCTCAAAGCTAACTGTACTGGCTTCTGATCTTTGGAGATGTAGAAAGTGTTGAAGACGTAAAGTTTTCTTCTCTAATGAAGTGATGATAGTAGATTAGTACTCCGTAGTATTCTTTATAGTAAAGACTAAAGAGGTTATATATATATGGCTATTTTCCGTTAACGAATGACAAATATTTGGTCAATCATGCTTTGAACAAATGTTAATCTAACATTTCTCTTTTAATTTTAGAGTTCCTTTAGTGTTCATTCTACTTTCCGGGTAGATATGTTACGCGTTGGATTTTGGAGGTTGTTGATTTCATTTACTGCAAGCTATTATCCCATTTCATAGATATGACAAGATATACAACCTTTTTTTCATCAGTAAACGAGATATATTACTTCAATTGTGCTTTGGAGACGTCTCTTTTTTGTATTTCCTTCCCGTATGTGTGTTTTCTCCTTTTTTGTTTTGGGAAGGAGGTTTTAGCAGAGCGCTTCTGCTACATCAATGTGTTGCTGGACTGATCTGCATTCTATTGGTTTAACTATTTATGTTATTAGGGAACTGTTGGTTGATGTGTTCTGCTCATTTTTCATCACTCCTGAAGATTTCACTGAAAATTCTTAATTAGGATCTCTGTGACATCTGTGTGGCTTTCTGTGAATACTTAACTAGTCTGGCTTAATTTGCTACTGAATTGCTGGTGTGTTGCTTTACTTCTTGCAGGTTTGCCCTGTTTGTGCAAAGAGAGTTGGAATGGACATGGTCGGTCATATCACAATGCAGCATGGGAATATATTGAAGATATCTTTTTTTTTCTGAGGCTTTTGTAA

mRNA sequence

AAACCGAATACTAGTGTGAATTTTTTCTCTTTTGGATTCCCTCGAAAATTCGGAATCGTTTACTTCCTCTAACCTCCTCAATGAAAGAAAATGAAACCCCTAAATCTCCATTACTGTCTCTAACCTCCCCAGTCTCCCACGCACTCTTCATCTCTCCGATTCCTCAACATTCAGCAACCCTAAATCCTTCTTTCATTCTTCGCACTCTTGTAAGATTCTACTTGAATTTCGCTGGTTTGCCCTGTTTGTGCAAAGAGAGTTGGAATGGACATGGTCGGTCATATCACAATGCAGCATGGGAATATATTGAAGATATCTTTTTTTTTCTGAGGCTTTTGTAA

Coding sequence (CDS)

ATGAAAGAAAATGAAACCCCTAAATCTCCATTACTGTCTCTAACCTCCCCAGTCTCCCACGCACTCTTCATCTCTCCGATTCCTCAACATTCAGCAACCCTAAATCCTTCTTTCATTCTTCGCACTCTTGTAAGATTCTACTTGAATTTCGCTGGTTTGCCCTGTTTGTGCAAAGAGAGTTGGAATGGACATGGTCGGTCATATCACAATGCAGCATGGGAATATATTGAAGATATCTTTTTTTTTCTGAGGCTTTTGTAA

Protein sequence

MKENETPKSPLLSLTSPVSHALFISPIPQHSATLNPSFILRTLVRFYLNFAGLPCLCKESWNGHGRSYHNAAWEYIEDIFFFLRLL

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo12332.1	Spo12332.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo12332.1 vs. NCBI nr
BLAST of Spo12332.1 vs. UniProtKB/TrEMBL
BLAST of Spo12332.1 vs. ExPASy Swiss-Prot
BLAST of Spo12332.1 vs. TAIR (Arabidopsis)

BLAST of Spo12332.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo12332.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo12332.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo12332.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009817	defense response to fungus, incompatible interaction
biological_process	GO:0050983	obsolete deoxyhypusine biosynthetic process from spermidine
biological_process	GO:0051090	regulation of DNA-binding transcription factor activity
biological_process	GO:0006464	cellular protein modification process
biological_process	GO:0006768	biotin metabolic process
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0008612	peptidyl-lysine modification to peptidyl-hypusine
biological_process	GO:0009553	embryo sac development
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006508	proteolysis
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0051302	regulation of cell division
biological_process	GO:0017009	protein-phycocyanobilin linkage
biological_process	GO:0010020	chloroplast fission
biological_process	GO:0006796	phosphate-containing compound metabolic process
biological_process	GO:0015940	pantothenate biosynthetic process
biological_process	GO:0019760	glucosinolate metabolic process
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0009245	lipid A biosynthetic process
biological_process	GO:0044262	cellular carbohydrate metabolic process
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0051301	cell division
biological_process	GO:0009407	toxin catabolic process
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0006749	glutathione metabolic process
biological_process	GO:0042631	cellular response to water deprivation
biological_process	GO:0009738	abscisic acid-activated signaling pathway
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0050794	regulation of cellular process
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0051716	cellular response to stimulus
biological_process	GO:0009987	cellular process
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0009103	lipopolysaccharide biosynthetic process
biological_process	GO:0000302	response to reactive oxygen species
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006855	drug transmembrane transport
biological_process	GO:0009627	systemic acquired resistance
biological_process	GO:0043090	amino acid import
biological_process	GO:0009723	response to ethylene
biological_process	GO:0030007	cellular potassium ion homeostasis
biological_process	GO:0034976	response to endoplasmic reticulum stress
biological_process	GO:0006952	defense response
biological_process	GO:0006448	regulation of translational elongation
biological_process	GO:0000911	cytokinesis by cell plate formation
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0000226	microtubule cytoskeleton organization
biological_process	GO:0010260	animal organ senescence
biological_process	GO:0009651	response to salt stress
biological_process	GO:0007165	signal transduction
biological_process	GO:0042908	xenobiotic transport
biological_process	GO:0008152	metabolic process
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005829	cytosol
cellular_component	GO:0000325	plant-type vacuole
cellular_component	GO:0005802	trans-Golgi network
cellular_component	GO:0005768	endosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005815	microtubule organizing center
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0009707	chloroplast outer membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0004602	glutathione peroxidase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0015035	protein disulfide oxidoreductase activity
molecular_function	GO:0032440	2-alkenal reductase [NAD(P)] activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0034038	deoxyhypusine synthase activity
molecular_function	GO:0008281	sulfonylurea receptor activity
molecular_function	GO:0008559	xenobiotic transmembrane transporting ATPase activity
molecular_function	GO:0009029	tetraacyldisaccharide 4'-kinase activity
molecular_function	GO:0016829	lyase activity
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005484	SNAP receptor activity
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0004077	biotin-[acetyl-CoA-carboxylase] ligase activity
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005509	calcium ion binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo11657	0.78	Barchart \| Table
Spo23332	0.76	Barchart \| Table
Spo19457	0.76	Barchart \| Table
Spo08407	0.75	Barchart \| Table
Spo25985	0.75	Barchart \| Table
Spo22004	0.75	Barchart \| Table
Spo01628	0.74	Barchart \| Table
Spo06637	0.74	Barchart \| Table
Spo09427	0.73	Barchart \| Table
Spo24331	0.73	Barchart \| Table
Spo19018	0.73	Barchart \| Table
Spo15524	0.73	Barchart \| Table
Spo14723	0.73	Barchart \| Table
Spo11860	0.73	Barchart \| Table
Spo25987	0.72	Barchart \| Table
Spo23327	0.72	Barchart \| Table
Spo25988	0.72	Barchart \| Table
Spo24133	0.72	Barchart \| Table
Spo18605	0.72	Barchart \| Table
Spo00089	0.71	Barchart \| Table
Spo01928	0.71	Barchart \| Table
Spo07829	0.71	Barchart \| Table
Spo09470	0.71	Barchart \| Table
Spo15317	0.71	Barchart \| Table
Spo21615	0.71	Barchart \| Table
Spo26975	0.71	Barchart \| Table
Spo15995	0.70	Barchart \| Table
Spo04123	0.70	Barchart \| Table
Spo25981	0.70	Barchart \| Table
Spo10835	0.70	Barchart \| Table
Spo00526	0.69	Barchart \| Table
Spo11276	0.69	Barchart \| Table
Spo11630	0.69	Barchart \| Table
Spo03901	0.69	Barchart \| Table
Spo25983	0.69	Barchart \| Table
Spo00943	0.69	Barchart \| Table
Spo09434	0.69	Barchart \| Table
Spo16801	0.69	Barchart \| Table
Spo20050	0.69	Barchart \| Table
Spo14354	0.68	Barchart \| Table
Spo11208	0.68	Barchart \| Table
Spo26688	0.68	Barchart \| Table
Spo02486	0.68	Barchart \| Table
Spo22694	0.68	Barchart \| Table
Spo12609	0.68	Barchart \| Table
Spo21155	0.68	Barchart \| Table
Spo19938	0.68	Barchart \| Table
Spo08278	0.68	Barchart \| Table
Spo14264	0.68	Barchart \| Table
Spo25466	0.67	Barchart \| Table
Spo12682	0.67	Barchart \| Table
Spo13507	0.67	Barchart \| Table
Spo13981	0.67	Barchart \| Table
Spo14405	0.67	Barchart \| Table
Spo14452	0.67	Barchart \| Table
Spo14914	0.67	Barchart \| Table
Spo03199	0.67	Barchart \| Table
Spo02665	0.67	Barchart \| Table
Spo23853	0.67	Barchart \| Table
Spo01155	0.67	Barchart \| Table
Spo25077	0.67	Barchart \| Table
Spo07633	0.67	Barchart \| Table
Spo14241	0.66	Barchart \| Table
Spo10381	0.66	Barchart \| Table
Spo13583	0.66	Barchart \| Table
Spo13499	0.66	Barchart \| Table
Spo00677	0.66	Barchart \| Table
Spo24430	0.66	Barchart \| Table
Spo06170	0.66	Barchart \| Table
Spo04719	0.66	Barchart \| Table
Spo05125	0.66	Barchart \| Table
Spo04200	0.66	Barchart \| Table
Spo15208	0.66	Barchart \| Table
Spo04486	0.66	Barchart \| Table
Spo14630	0.66	Barchart \| Table
Spo21674	0.66	Barchart \| Table
Spo21956	0.66	Barchart \| Table
Spo09008	0.66	Barchart \| Table
Spo12294	0.66	Barchart \| Table
Spo12005	0.66	Barchart \| Table
Spo01603	0.66	Barchart \| Table
Spo23745	0.66	Barchart \| Table
Spo20106	0.65	Barchart \| Table
Spo13171	0.65	Barchart \| Table
Spo28267	0.65	Barchart \| Table
Spo19217	0.65	Barchart \| Table
Spo17038	0.65	Barchart \| Table
Spo05653	0.65	Barchart \| Table
Spo09798	0.65	Barchart \| Table
Spo23125	0.65	Barchart \| Table
Spo01132	0.65	Barchart \| Table