Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CATAGTAATAGATTTGCGGTGGCGAAGTAGCATTTTACGAGAATAGACATCATTAGAATTTAGAAGGTGTCTGTTATCAAATATCGAGTAATCGACTATCGATAACCAAAACCCCAAACCCAAATCCCCTTCTGACTTCTGTCATCGGAAATCTCCGGCGACAATGGATCGAATTCAGCTTCTTCTAGTTGGACTTCCACTGTTCTTGTTCTCCACTGACATCTTCAACCTCTTTCTCTCTTCTCCTCCTCCTAAACCCTCTTCTCATCATCATCACCATCAACATATTCCTAAACCTTCTTCTCCAATCCAACAAACCCTAAATTTCCCTTCTCAGGTCACTTTCTCTATTTATTATTTTTTACGAATCTTCGATTTTGATTCAATCTGTTTAATTTATTGATTTTTGTTTGTTGATCAATTGCAGCAATCGAATTCTATTGCTTATGGCCGTACTGTTACTATCGATTTCTGCTCCTCTTGCTCTTACAAGTAATTATTCTCTTCTCTTTTTTTGGGTTTTTTGTTTTCTGGGGTTTTGATTTGATTTGATGCTGAATTGAACCTTTGATTTTGTGAAAGTTTAATCACACTTGTTTATGATTATAATAATATTTGATTGTATGTTTTTCGATTGTGGTATAATCGCCCTTTGTTTGCAATTTCTATCTAATATTAGGGGGGAGGAGGAGTGATACGGGTAGGATATATCAATTTGATACGGTCAGATGAGTTAATTAGGCAGTTGCATTTCGTGGATGGTTTGGACTTTAGATGTAATTTAGTAAATTAGGAAAGTTTGCAGGGGTTGGAGGAGGAAGATGGACATACAGTGAGATCGGGTTGACTTTTTTATACGGTACCTCGCTGATTATCATATACTTATAGGGTCTTTTCATGTTGTGACATCGCTCATCTGATGTAAGGATGTGTACATTTTTGAAACTAGGGAGATTAGGTTGTTTGAACTTGTGATGGTGTAGTTGTCGCTCACAACTTCTTTGTAGAAATTGGTTCCTAAAGTTCTGAATTGGGGGTTTGGAATTTGGATACATCACAGCCTTCACGGAACCAAATTCATCAATGTTGCAAATGATATAAGCCAAGCCGTTAATCATTACTTAGTGTGAATACTGTTTGATGGTCGAGAAAACTTCACCATGTCGTTCTAATGAATATGGTATATGGACTTTTCTTTACCCTCCTTTTCAATTTAGAAAGTAGAGGCAGTGCCAAAAAAGGCAGCGTGAGATTTAAAAACGTTACATCTATAAAGGGATGCTGGAAAAAACAATTTTGGATATCTGAATGTATGAATTGATATGTCTATTTGGATTCGAGGGGGAAAAGTCTTGTCTATGCTGCTGCAAAACTTGCAAACAAGTGCCTTTTGTGAGTACTCTTCATCTCTGGAGAGCGAACTACCTTATGAATACTGAATAACCACTTCCTCCAGTATTAGTCATGCCAGTTGCAGTAGGTTCTTGATGCTAGCCATTTTTCTTACAATCCCATAGAATTAGACCTGGCAAAAATCGACCCGAATCCGACCCGAAAATAATGGGTCCTGAACAAGATTTTGTGACCCGTAACCCGATTTTATCCGAACCCGAACAACCCAAAAAGTAATGGGTCAAAACCCGACCGAACCCGTTTTGGACCCGACTGATTGAAAATCATTGTATTTATAGTAATAAATGAGATTATGAGAAAATTTAAGCATAATAAACACGTTGTTTTTACTACTCCCCCCGTTTCTTTATGTTTGTTACGTATTCCTTTTAGGGTGTTTCACAATGTTTGTTACGTGGGAGAATCTTTCCTTTTATAAACTTATTATACTATCATTTTTTGTGCCATCTTTTAATTTTAATTGGTCCAATTTTTTCAATTCATTAAATATCTTAGCAATTTTCCAAGTATTAGTCATGCCAGTTGCAGTAGGTTCTTGATGCTAGCCATTTTTCTTACAATCCCATAGAAATATAGAATTCAAGCAGTATACAACAACGGAACCATAGCCAATCCCACAAGGATGGGGTCGGATGCATGAACCAAGAGTCTATCTTGGTCCACAAAGATAGTGTTCCTCCATTGGTTTCTATCTAGTGTCACATGCGCTTACAAACCCATTTTACTCGTGTCATTCTTAACAAGCCCTTAGTAATCTCGTTATATTTTCTTTGGCTATATATGTTTTAGTTAGTAGTCAAACTCTTATCATTTTTGGATGCTTTATACTAAGTGTTGAGTTTTATTTTATGATATATCCCGTTAATAGTGTGAACAACCTTTTAAAGATATGTTGCAAGGTCTTTGGTATCTCAGTGGAAATTCTTTTGGCCAGTTTCTTTATGTGAGCCAAAAGTTCATTAACTTGTGGATTCTTGATGAACACTAAGTCTGATTTCACGCTTTACTATTTAAGACATTNATAAACTTATTATACTATCATTTTTTGTGCCATCTTTTAATTTTAATTGGTCCAATTTTTTCAATTCATTAAATATCTTAGCAATTTTCCAAGTATTAGTCATGCCAGTTGCAGTAGGTTCTTGATGCTAGCCATTTTTCTTACAATCCCATAGAAATATAGAATTCAAGCAGTATACAACAACGGAACCATAGCCAATCCCACAAGGATGGGGTCGGATGCATGAACCAAGAGTCTATCTTGGTCCACAAAGATAGTGTTCCTCCATTGGTTTCTATCTAGTGTCACATGCGCTTACAAACCCATTTTACTCGTGTCATTCTTAACAAGCCCTTAGTAATCTCGTTATATTTTCTTTGGCTATATATGTTTTAGTTAGTAGTCAAACTCTTATCATTTTTGGATGCTTTATACTAAGTGTTGAGTTTTATTTTATGATATATCCCGTTAATAGTGTGAACAACCTTTTAAAGATATGTTGCAAGGTCTTTGGTATCTCAGTGGAAATTCTTTTGGCCAGTTTCTTTATGTGAGCCAAAAGTTCATTAACTTGTGGATTCTTGATGAACACTAAGTCTGATTTCACGCTTTACTATTTAAGACATTGGTACAATTTGGTATTTTCAGCAATATGGAATGGTCCTATTGTGGATTGAGATTTTATCTAGCAAGAGCTACTTGATGGTACTTTCATCCAAATCATAGGATTGTTATGAGTTAGCATGGAATAATACTGATTTTATTCAGCTGCGACATAAGAATTAATTTCTGGTTTAAGGGATAAACTGGTTTCGGAACTCGTGCTATCTGCATATGCTTAGTGGTATACATGGTCATTATAACAATATTTAGAAACTTTGAAGCTGTGGGATTATTGTAGGGGGGGTCATAATTTGTTTGAATGCCGAAGAAACTCTCTTAAAATAAAAGAGAGGAGGGATGTTTAGCTAATTGATATTTTATTGTTGTAATGAAACATAATACTAGGCACATATTGTCCCAGCTGCAAGGAATAATCTCTCAGGAGATAAGCTTTAGTTAAGGAAAGGTCCTGAAAGGATGAAAAAAAATATTTGTTTTAGAAATCATATATTGTTAAATTTTACTATTGAAGGAAATGGATGTTTGTTTAGATGGTCTCGATATAAATCTTGGATGTGTATAGGTAGGAGGATCAGGTAAAGATTGTTGTTGGTTGAATGTCTTGAATCTAACTGCTTCAATGTCCTTTATCCCTTGTAAGTGAGCTTTGAATTCCAACCTTTGAAACCTCTACATTTATTCAACCAATATCTAATCGTTCTACCGTGGGTATGCTTGGATATATGTGCAACTCCATAATCTTTCTTGGAAATACGTGCAACTCCATAATCTTTCTGAAATTGAACTATTTTACCGTATTAGGGGCACAGCCGTGGCAATGAAGAATATGCTGGAGACTCAGTTTCCTGGAATTAATGTTGCTCTTGCAAATTATCCACCACCTGCTCCAAAACGCATCCTGAGCAAATTGGTACCTGTTGCTCAAGTTGGAGTAGTTGGCATGATAATGGCAGGTGATCAGATCTTTCCTAGGTTGGGAATGTCTCCACCTCCATGGTTTTACACATTGCGTGCCAATAGATTTGGAACCATATCTGCAGCCTGGCTATTCGGGAACTTCCTTCAGTCTTACCTACAAAGCTCTGGTGCTTTTGAAGTGTATCTTGATGGGGAAATGGTAAGTTGTCTGGATGTTCACTATAATTTTATGTTTCTATATAAGAGTTTTCCCATCCTTTTTTCATTTCACTCTGACCTTTTGGCCAAATTTCCTCCTGAAGCCCGCAAGCCTTGAGTTTTTGCAGTAAATTTAAGGATCTGCTGAGGCCTGAGGGTCCTTCACTATGTTGTAAATTGATGAATTCAATTATACTCATACCTAATTTGAAGCTTTGTGCAGTACCGGGCACTAAACTGAACTGATTGTTCCTTGTTAAAACCATTGTTTACTGTTTGCAAACTAAAATGGTTTTTTACTGATCAAAACTTAGTTTCGTTGCTTCTCTTCTCTTTTGTTTTGTTTTTTTTTTTACCGTTTGAAACCAATTTTTACCCATCAAAACTTTTATTGCTGAAACTGATTACTAAGTTAAAGAGAACGAAGCCTCTTTTGGATCAGCGTTGTAAAATTCTGCCGAGTGAAAATGACTGAAATATCGAATCTGCATTTGGCATGTGAAATTTTGTGATCGCTGCTCATCTTTTTTGTATGTATTGTACAAATGTAGGTGTTTTCAAAGTTGGGAATGCAAAGGTTTCCAGGTGAAATTGAATTGAAGGACCTTATTGGCAAAAGGCTTGGCTCTAAACTTGTGGATGGTGCCGGGGCAAATTTATGGTCTTGAAACACTCCCACCTGATTTTGGAAGAAGAAGGGAACCAGAGAAGGAGAGTCATGGAGACAAAAGAAAACCTTACCCTATCCTGGTTCAGTTAGCTGATAAATTTTACCAACCGGTGCTTTTTTTGCATATGTAAATTTTGATTACAGTACCGGACATGAAGATAGTCATTATCTGACATATGTAATCGGATTTGGAATCTTGACTTGTACTGCAGTTTCTAATTTATAGCATGGCGGTTATATTTTTTTCATCCTGTGTCATGTAAGCTTAGGGTTTTGGTGCATGTATGCATTGTGGTGCTTCAAAGATTAGAATGGAGTTAATTTTGAACCCTAATTGGCTCATCAAATGAGCAATAATAGTGTTGGATGGTATCTGCTTATCCTGCAATGCTTACATCCCTAAAATCAGGCTTCATCAGATTTATTGCGACCATGACAGTGTGACACTGTGGATATACAATTACAGTACAGTCTTACAGGGAACC CATAGTAATAGATTTGCGGTGGCGAAGTAGCATTTTACGAGAATAGACATCATTAGAATTTAGAAGGTGTCTGTTATCAAATATCGAGTAATCGACTATCGATAACCAAAACCCCAAACCCAAATCCCCTTCTGACTTCTGTCATCGGAAATCTCCGGCGACAATGGATCGAATTCAGCTTCTTCTAGTTGGACTTCCACTGTTCTTGTTCTCCACTGACATCTTCAACCTCTTTCTCTCTTCTCCTCCTCCTAAACCCTCTTCTCATCATCATCACCATCAACATATTCCTAAACCTTCTTCTCCAATCCAACAAACCCTAAATTTCCCTTCTCAGCAATCGAATTCTATTGCTTATGGCCGTACTGTTACTATCGATTTCTGCTCCTCTTGCTCTTACAAGGGCACAGCCGTGGCAATGAAGAATATGCTGGAGACTCAGTTTCCTGGAATTAATGTTGCTCTTGCAAATTATCCACCACCTGCTCCAAAACGCATCCTGAGCAAATTGGTACCTGTTGCTCAAGTTGGAGTAGTTGGCATGATAATGGCAGGTGATCAGATCTTTCCTAGGTTGGGAATGTCTCCACCTCCATGGTTTTACACATTGCGTGCCAATAGATTTGGAACCATATCTGCAGCCTGGCTATTCGGGAACTTCCTTCAGTCTTACCTACAAAGCTCTGGTGCTTTTGAAGTGTATCTTGATGGGGAAATGGTGTTTTCAAAGTTGGGAATGCAAAGGTTTCCAGGTGAAATTGAATTGAAGGACCTTATTGGCAAAAGGCTTGGCTCTAAACTTGTGGATGGTGCCGGGGCAAATTTATGGTCTTGAAACACTCCCACCTGATTTTGGAAGAAGAAGGGAACCAGAGAAGGAGAGTCATGGAGACAAAAGAAAACCTTACCCTATCCTGGTTCAGTTAGCTGATAAATTTTACCAACCGGTGCTTTTTTTGCATATGTAAATTTTGATTACAGTACCGGACATGAAGATAGTCATTATCTGACATATGTAATCGGATTTGGAATCTTGACTTGTACTGCAGTTTCTAATTTATAGCATGGCGGTTATATTTTTTTCATCCTGTGTCATGTAAGCTTAGGGTTTTGGTGCATGTATGCATTGTGGTGCTTCAAAGATTAGAATGGAGTTAATTTTGAACCCTAATTGGCTCATCAAATGAGCAATAATAGTGTTGGATGGTATCTGCTTATCCTGCAATGCTTACATCCCTAAAATCAGGCTTCATCAGATTTATTGCGACCATGACAGTGTGACACTGTGGATATACAATTACAGTACAGTCTTACAGGGAACC ATGGATCGAATTCAGCTTCTTCTAGTTGGACTTCCACTGTTCTTGTTCTCCACTGACATCTTCAACCTCTTTCTCTCTTCTCCTCCTCCTAAACCCTCTTCTCATCATCATCACCATCAACATATTCCTAAACCTTCTTCTCCAATCCAACAAACCCTAAATTTCCCTTCTCAGCAATCGAATTCTATTGCTTATGGCCGTACTGTTACTATCGATTTCTGCTCCTCTTGCTCTTACAAGGGCACAGCCGTGGCAATGAAGAATATGCTGGAGACTCAGTTTCCTGGAATTAATGTTGCTCTTGCAAATTATCCACCACCTGCTCCAAAACGCATCCTGAGCAAATTGGTACCTGTTGCTCAAGTTGGAGTAGTTGGCATGATAATGGCAGGTGATCAGATCTTTCCTAGGTTGGGAATGTCTCCACCTCCATGGTTTTACACATTGCGTGCCAATAGATTTGGAACCATATCTGCAGCCTGGCTATTCGGGAACTTCCTTCAGTCTTACCTACAAAGCTCTGGTGCTTTTGAAGTGTATCTTGATGGGGAAATGGTGTTTTCAAAGTTGGGAATGCAAAGGTTTCCAGGTGAAATTGAATTGAAGGACCTTATTGGCAAAAGGCTTGGCTCTAAACTTGTGGATGGTGCCGGGGCAAATTTATGGTCTTGA MDRIQLLLVGLPLFLFSTDIFNLFLSSPPPKPSSHHHHHQHIPKPSSPIQQTLNFPSQQSNSIAYGRTVTIDFCSSCSYKGTAVAMKNMLETQFPGINVALANYPPPAPKRILSKLVPVAQVGVVGMIMAGDQIFPRLGMSPPPWFYTLRANRFGTISAAWLFGNFLQSYLQSSGAFEVYLDGEMVFSKLGMQRFPGEIELKDLIGKRLGSKLVDGAGANLWS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo12370.1 vs. NCBI nr
Match: gi|902212196|gb|KNA16905.1| (hypothetical protein SOVF_084680 [Spinacia oleracea]) HSP 1 Score: 449.9 bits (1156), Expect = 2.600e-123 Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1
BLAST of Spo12370.1 vs. NCBI nr
Match: gi|731331622|ref|XP_010676756.1| (PREDICTED: selT-like protein [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 369.4 bits (947), Expect = 4.400e-99 Identity = 191/228 (83.77%), Postives = 201/228 (88.16%), Query Frame = 1
BLAST of Spo12370.1 vs. NCBI nr
Match: gi|225439410|ref|XP_002264265.1| (PREDICTED: selT-like protein [Vitis vinifera]) HSP 1 Score: 312.4 bits (799), Expect = 6.500e-82 Identity = 156/228 (68.42%), Postives = 186/228 (81.58%), Query Frame = 1
BLAST of Spo12370.1 vs. NCBI nr
Match: gi|147854126|emb|CAN83419.1| (hypothetical protein VITISV_024323 [Vitis vinifera]) HSP 1 Score: 311.6 bits (797), Expect = 1.100e-81 Identity = 155/230 (67.39%), Postives = 187/230 (81.30%), Query Frame = 1
BLAST of Spo12370.1 vs. NCBI nr
Match: gi|1021037671|gb|KZM95454.1| (hypothetical protein DCAR_018696 [Daucus carota subsp. sativus]) HSP 1 Score: 303.1 bits (775), Expect = 3.900e-79 Identity = 153/230 (66.52%), Postives = 184/230 (80.00%), Query Frame = 1
BLAST of Spo12370.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RBP2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_084680 PE=4 SV=1) HSP 1 Score: 449.9 bits (1156), Expect = 1.800e-123 Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1
BLAST of Spo12370.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CJT8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g102810 PE=4 SV=1) HSP 1 Score: 369.4 bits (947), Expect = 3.100e-99 Identity = 191/228 (83.77%), Postives = 201/228 (88.16%), Query Frame = 1
BLAST of Spo12370.1 vs. UniProtKB/TrEMBL
Match: D7SY21_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0105g00440 PE=4 SV=1) HSP 1 Score: 312.4 bits (799), Expect = 4.500e-82 Identity = 156/228 (68.42%), Postives = 186/228 (81.58%), Query Frame = 1
BLAST of Spo12370.1 vs. UniProtKB/TrEMBL
Match: A5BN73_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024323 PE=4 SV=1) HSP 1 Score: 311.6 bits (797), Expect = 7.700e-82 Identity = 155/230 (67.39%), Postives = 187/230 (81.30%), Query Frame = 1
BLAST of Spo12370.1 vs. UniProtKB/TrEMBL
Match: A0A164Z7A9_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018696 PE=4 SV=1) HSP 1 Score: 303.1 bits (775), Expect = 2.700e-79 Identity = 153/230 (66.52%), Postives = 184/230 (80.00%), Query Frame = 1
BLAST of Spo12370.1 vs. ExPASy Swiss-Prot
Match: SELT_ARATH (SelT-like protein OS=Arabidopsis thaliana GN=At3g47300 PE=2 SV=2) HSP 1 Score: 260.4 bits (664), Expect = 1.800e-68 Identity = 132/218 (60.55%), Postives = 170/218 (77.98%), Query Frame = 1
BLAST of Spo12370.1 vs. ExPASy Swiss-Prot
Match: HSP6_HETGL (Putative esophageal gland cell secretory protein 6 OS=Heterodera glycines GN=HSP6 PE=2 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 3.000e-18 Identity = 47/150 (31.33%), Postives = 81/150 (54.00%), Query Frame = 1
BLAST of Spo12370.1 vs. ExPASy Swiss-Prot
Match: SELT2_CAEEL (Putative selT-like protein F28H7.4 OS=Caenorhabditis elegans GN=F28H7.4 PE=3 SV=2) HSP 1 Score: 85.5 bits (210), Expect = 8.000e-16 Identity = 58/215 (26.98%), Postives = 104/215 (48.37%), Query Frame = 1
BLAST of Spo12370.1 vs. ExPASy Swiss-Prot
Match: SELT_DROME (SelT-like protein OS=Drosophila melanogaster GN=CG3887 PE=2 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 2.600e-14 Identity = 45/142 (31.69%), Postives = 73/142 (51.41%), Query Frame = 1
BLAST of Spo12370.1 vs. ExPASy Swiss-Prot
Match: SELT1_CAEEL (Putative selT-like protein C35C5.3 OS=Caenorhabditis elegans GN=C35C5.3 PE=3 SV=2) HSP 1 Score: 73.9 bits (180), Expect = 2.400e-12 Identity = 39/142 (27.46%), Postives = 69/142 (48.59%), Query Frame = 1
BLAST of Spo12370.1 vs. TAIR (Arabidopsis)
Match: AT5G58640.1 (Selenoprotein, Rdx type) HSP 1 Score: 271.9 bits (694), Expect = 3.400e-73 Identity = 139/218 (63.76%), Postives = 176/218 (80.73%), Query Frame = 1
BLAST of Spo12370.1 vs. TAIR (Arabidopsis)
Match: AT3G47300.1 (SELT-like protein precursor) HSP 1 Score: 260.4 bits (664), Expect = 1.000e-69 Identity = 132/218 (60.55%), Postives = 170/218 (77.98%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo12370.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo12370.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo12370.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo12370.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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