Spo12379 (gene)

Overview
NameSpo12379
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 37181212 .. 37181503 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGTGAGCATCCATTGTTTATGTATTCAGCAGAGTAGAGATTTTCCCTTGTGCCTTCCATCATTCTCGAATAATCAGATCACTGTATCCCCTGTATCCCCTGTATCCATAATTTTGTGCAATTAGAAATCGCTAAAACCTCGGACTTGAGCATCTTGTATTCTGATGTTTCAAGTTCTGTAGTAGAGGTCAGATTAGACATCTGTTGTATTCATTCTCTCTTTATATTTCCCCCCTTGATTTTCTTTCTTTTGAGAAAAGTGGGTATATGATTGTGTATCATAACTGA

mRNA sequence

ATGTTGGTGAGCATCCATTGTTTATGTATTCAGCAGAGTAGAGATTTTCCCTTGTGCCTTCCATCATTCTCGAATAATCAGATCACTGTATCCCCTGTATCCCCTTTCTGTAGTAGAGGTCAGATTAGACATCTGTTGTATTCATTCTCTCTTTATATTTCCCCCCTTGATTTTCTTTCTTTTGAGAAAAGTGGGTATATGATTGTGTATCATAACTGA

Coding sequence (CDS)

ATGTTGGTGAGCATCCATTGTTTATGTATTCAGCAGAGTAGAGATTTTCCCTTGTGCCTTCCATCATTCTCGAATAATCAGATCACTGTATCCCCTGTATCCCCTTTCTGTAGTAGAGGTCAGATTAGACATCTGTTGTATTCATTCTCTCTTTATATTTCCCCCCTTGATTTTCTTTCTTTTGAGAAAAGTGGGTATATGATTGTGTATCATAACTGA

Protein sequence

MLVSIHCLCIQQSRDFPLCLPSFSNNQITVSPVSPFCSRGQIRHLLYSFSLYISPLDFLSFEKSGYMIVYHN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo12379.1Spo12379.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo12379.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12379.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12379.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12379.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001510 RNA methylation
biological_process GO:0000737 DNA catabolic process, endonucleolytic
biological_process GO:0007389 pattern specification process
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0008361 regulation of cell size
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0010015 root morphogenesis
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0006285 base-excision repair, AP site formation
biological_process GO:0006306 DNA methylation
biological_process GO:0048653 anther development
biological_process GO:0006289 nucleotide-excision repair
biological_process GO:0010207 photosystem II assembly
biological_process GO:0006749 glutathione metabolic process
biological_process GO:0019852 L-ascorbic acid metabolic process
biological_process GO:0010731 protein glutathionylation
biological_process GO:0010583 response to cyclopentenone
biological_process GO:0009636 response to toxic substance
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0009407 toxin catabolic process
biological_process GO:0009926 auxin polar transport
biological_process GO:0009832 plant-type cell wall biogenesis
biological_process GO:0006412 translation
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0008152 metabolic process
biological_process GO:0006007 glucose catabolic process
biological_process GO:0006508 proteolysis
biological_process GO:0009231 riboflavin biosynthetic process
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009840 chloroplastic endopeptidase Clp complex
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0005840 ribosome
cellular_component GO:0009507 chloroplast
cellular_component GO:0009349 riboflavin synthase complex
cellular_component GO:0005634 nucleus
molecular_function GO:0004364 glutathione transferase activity
molecular_function GO:0045174 glutathione dehydrogenase (ascorbate) activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity
molecular_function GO:0003684 damaged DNA binding
molecular_function GO:0000906 6,7-dimethyl-8-ribityllumazine synthase activity
molecular_function GO:0031177 phosphopantetheine binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0046914 transition metal ion binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005515 protein binding
RNA-Seq Expression