Spo12382 (gene) | SpinachBase

Overview


Name	Spo12382
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Early light-induced protein, putative
Location	chr6 : 37198526 .. 37199128 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATGTCTATGCAAGTACAAGCCGTTCTTTCCAATTCAGTTGGTGCCTTCACTAATGGCTCCTCTAAGGCGTATCCACTAGGGTTCAACCCTCGGATGTGCAAACGTGTCAACTTCGGCGTCAAGTGTATGGCCGAGGGAGGGGCTGGTGGTCAACCCAAACTTGATTCCGGTGTACCCAAGCCAAACCCCACCGTATCTTCACCCACCTCGATCCCAACCCCAACCCCAACCCCAAGGCCACAACCAAAGAAGGTAAGCACAAACTTCAGAGACTTGTTCGCATTTAGCGGCCCTGCACCGGAAAGGATCAACGGCCGCCTAGCCATGATCGGCTTCGTGGCCGCAATAGCAGTAGAGCTATCTAACGGCACTGACCTATTTACTCAAATATCCGACGGTGGATCACAATGGTTCCTAGGAACAAGCATCCTTCTTTCAGTAGCATCATTAGTGCCATTGCTCCAAGGAAGCCGAGCAGAAGCAAAGACACAAGGGTTAATGAATGCCAACGCCGAGCTTTGGAATGGTAGAATTGCTATGTTAGGGCTTGTAGCCTTGGCTGTAACTGAGATCGTTAAAGGTGGAGCGCTTGTTTGA

mRNA sequence

ATGGCTATGTCTATGCAAGTACAAGCCGTTCTTTCCAATTCAGTTGGTGCCTTCACTAATGGCTCCTCTAAGGCGTATCCACTAGGGTTCAACCCTCGGATGTGCAAACGTGTCAACTTCGGCGTCAAGTGTATGGCCGAGGGAGGGGCTGGTGGTCAACCCAAACTTGATTCCGGTGTACCCAAGCCAAACCCCACCGTATCTTCACCCACCTCGATCCCAACCCCAACCCCAACCCCAAGGCCACAACCAAAGAAGGTAAGCACAAACTTCAGAGACTTGTTCGCATTTAGCGGCCCTGCACCGGAAAGGATCAACGGCCGCCTAGCCATGATCGGCTTCGTGGCCGCAATAGCAGTAGAGCTATCTAACGGCACTGACCTATTTACTCAAATATCCGACGGTGGATCACAATGGTTCCTAGGAACAAGCATCCTTCTTTCAGTAGCATCATTAGTGCCATTGCTCCAAGGAAGCCGAGCAGAAGCAAAGACACAAGGGTTAATGAATGCCAACGCCGAGCTTTGGAATGGTAGAATTGCTATGTTAGGGCTTGTAGCCTTGGCTGTAACTGAGATCGTTAAAGGTGGAGCGCTTGTTTGA

Coding sequence (CDS)

ATGGCTATGTCTATGCAAGTACAAGCCGTTCTTTCCAATTCAGTTGGTGCCTTCACTAATGGCTCCTCTAAGGCGTATCCACTAGGGTTCAACCCTCGGATGTGCAAACGTGTCAACTTCGGCGTCAAGTGTATGGCCGAGGGAGGGGCTGGTGGTCAACCCAAACTTGATTCCGGTGTACCCAAGCCAAACCCCACCGTATCTTCACCCACCTCGATCCCAACCCCAACCCCAACCCCAAGGCCACAACCAAAGAAGGTAAGCACAAACTTCAGAGACTTGTTCGCATTTAGCGGCCCTGCACCGGAAAGGATCAACGGCCGCCTAGCCATGATCGGCTTCGTGGCCGCAATAGCAGTAGAGCTATCTAACGGCACTGACCTATTTACTCAAATATCCGACGGTGGATCACAATGGTTCCTAGGAACAAGCATCCTTCTTTCAGTAGCATCATTAGTGCCATTGCTCCAAGGAAGCCGAGCAGAAGCAAAGACACAAGGGTTAATGAATGCCAACGCCGAGCTTTGGAATGGTAGAATTGCTATGTTAGGGCTTGTAGCCTTGGCTGTAACTGAGATCGTTAAAGGTGGAGCGCTTGTTTGA

Protein sequence

MAMSMQVQAVLSNSVGAFTNGSSKAYPLGFNPRMCKRVNFGVKCMAEGGAGGQPKLDSGVPKPNPTVSSPTSIPTPTPTPRPQPKKVSTNFRDLFAFSGPAPERINGRLAMIGFVAAIAVELSNGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRIAMLGLVALAVTEIVKGGALV

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo12382.1	Spo12382.1	mRNA

Homology

[Close]

BLAST of Spo12382.1 vs. NCBI nr
Match: gi|902150947|gb|KNA05469.1| (hypothetical protein SOVF_190050 [Spinacia oleracea])

HSP 1 Score: 356.7 bits (914), Expect = 2.700e-95
Identity = 189/200 (94.50%), Postives = 192/200 (96.00%), Query Frame = 1

		  
Query: 1   MAMSMQVQAVLSNSVGAFTNGSSKAYPLGFNPRMCKRVNFGVKCMAEGGAGGQPKLDSGV 60
           MAMSMQVQA+LSNSVGAFTNG+SKAYPLGFNPRM KRVNFGVKCMAE  AGG+PKLDSGV
Sbjct: 1   MAMSMQVQALLSNSVGAFTNGTSKAYPLGFNPRMAKRVNFGVKCMAEEKAGGEPKLDSGV 60

Query: 61  PKPNPTVSSPTSIPTPTPTPRPQPKKVSTNFRDLFAFSGPAPERINGRLAMIGFVAAIAV 120
           PKPNPTVSSPT    P PTPRPQPKKVSTNFRDLFAFSGPAPERINGRLAMIGFVAAIAV
Sbjct: 61  PKPNPTVSSPT----PIPTPRPQPKKVSTNFRDLFAFSGPAPERINGRLAMIGFVAAIAV 120

Query: 121 ELSNGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRI 180
           ELSNGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRI
Sbjct: 121 ELSNGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRI 180

Query: 181 AMLGLVALAVTEIVKGGALV 201
           AMLGLVALAVTEIVKGGALV
Sbjct: 181 AMLGLVALAVTEIVKGGALV 196

[Close]

BLAST of Spo12382.1 vs. NCBI nr
Match: gi|902194451|gb|KNA12559.1| (hypothetical protein SOVF_124910 [Spinacia oleracea])

HSP 1 Score: 351.3 bits (900), Expect = 1.100e-93
Identity = 186/200 (93.00%), Postives = 189/200 (94.50%), Query Frame = 1

		  
Query: 1   MAMSMQVQAVLSNSVGAFTNGSSKAYPLGFNPRMCKRVNFGVKCMAEGGAGGQPKLDSGV 60
           MAMSMQVQA+LSNSVG F NGS KAYPLGFNPRM KRVNFGVKCMAE GAGG+PKLDS V
Sbjct: 1   MAMSMQVQALLSNSVGTFANGS-KAYPLGFNPRMAKRVNFGVKCMAEEGAGGEPKLDSSV 60

Query: 61  PKPNPTVSSPTSIPTPTPTPRPQPKKVSTNFRDLFAFSGPAPERINGRLAMIGFVAAIAV 120
           PKPNPT SSPT  P PTPTPRPQPKKVSTNF DLFAFSGPAPERINGRLAMIGFVAAIAV
Sbjct: 61  PKPNPTSSSPTPTPIPTPTPRPQPKKVSTNFTDLFAFSGPAPERINGRLAMIGFVAAIAV 120

Query: 121 ELSNGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRI 180
           ELSNGTDLFTQIS+GGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRI
Sbjct: 121 ELSNGTDLFTQISNGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRI 180

Query: 181 AMLGLVALAVTEIVKGGALV 201
           AMLGLVALAVTEIVKGGALV
Sbjct: 181 AMLGLVALAVTEIVKGGALV 199

[Close]

BLAST of Spo12382.1 vs. NCBI nr
Match: gi|902202340|gb|KNA14240.1| (hypothetical protein SOVF_109350 [Spinacia oleracea])

HSP 1 Score: 344.7 bits (883), Expect = 1.100e-91
Identity = 187/200 (93.50%), Postives = 190/200 (95.00%), Query Frame = 1

		  
Query: 1   MAMSMQVQAVLSNSVGAFTNGSSKAYPLGFNPRMCKRVNFGVKCMAEGGAGGQPKLDSGV 60
           MAMSMQVQA++SNSVGAFTNGS KAYPLGFNPRM KRVNFGVKCMAEG AGG+PKLDSGV
Sbjct: 1   MAMSMQVQALVSNSVGAFTNGS-KAYPLGFNPRMAKRVNFGVKCMAEG-AGGEPKLDSGV 60

Query: 61  PKPNPTVSSPTSIPTPTPTPRPQPKKVSTNFRDLFAFSGPAPERINGRLAMIGFVAAIAV 120
           PK NPTVSSPT    P PTPRPQPKKVSTNF DLFAFSGPAPERINGRLAMIGFVAAIAV
Sbjct: 61  PKSNPTVSSPT----PIPTPRPQPKKVSTNFTDLFAFSGPAPERINGRLAMIGFVAAIAV 120

Query: 121 ELSNGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRI 180
           ELSNGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRI
Sbjct: 121 ELSNGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRI 180

Query: 181 AMLGLVALAVTEIVKGGALV 201
           AMLGLVALAVTEIVKGGALV
Sbjct: 181 AMLGLVALAVTEIVKGGALV 194

[Close]

BLAST of Spo12382.1 vs. NCBI nr
Match: gi|902164229|gb|KNA06948.1| (hypothetical protein SOVF_176380 [Spinacia oleracea])

HSP 1 Score: 342.4 bits (877), Expect = 5.200e-91
Identity = 183/200 (91.50%), Postives = 191/200 (95.50%), Query Frame = 1

		  
Query: 1   MAMSMQVQAVLSNSVGAFTNGSSKAYPLGFNPRMCKRVNFGVKCMAEGGAGGQPKLDSGV 60
           MAMSMQVQA+LSNSVGAFTNGS+ AYPLGFNPRMCKRV+FGVKCMAE  AGG+PKL+SG+
Sbjct: 1   MAMSMQVQALLSNSVGAFTNGSN-AYPLGFNPRMCKRVSFGVKCMAEEKAGGEPKLNSGL 60

Query: 61  PKPNPTVSSPTSIPTPTPTPRPQPKKVSTNFRDLFAFSGPAPERINGRLAMIGFVAAIAV 120
           PKPNP+VSS TSI    PTPRPQPKKVSTNF DLFAFSGPAPERINGRLAMIGF+AAIAV
Sbjct: 61  PKPNPSVSSSTSI----PTPRPQPKKVSTNFTDLFAFSGPAPERINGRLAMIGFMAAIAV 120

Query: 121 ELSNGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRI 180
           ELSNGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRI
Sbjct: 121 ELSNGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRI 180

Query: 181 AMLGLVALAVTEIVKGGALV 201
           AMLGLVALAVTEIVKGGALV
Sbjct: 181 AMLGLVALAVTEIVKGGALV 195

[Close]

BLAST of Spo12382.1 vs. NCBI nr
Match: gi|902208596|gb|KNA15989.1| (hypothetical protein SOVF_093280 [Spinacia oleracea])

HSP 1 Score: 334.0 bits (855), Expect = 1.900e-88
Identity = 179/201 (89.05%), Postives = 184/201 (91.54%), Query Frame = 1

		  
Query: 1   MAMSMQVQAVLSNSVGAFTNGSSKAYPLGFNPRMCKRVNFGVKCMAEGGAGGQPKLDSGV 60
           MAMSMQVQA+LSNSVGAFTNG+SKAYPLGFNPRM KRVNFGVKCMAE   GG+PKLDSG+
Sbjct: 1   MAMSMQVQALLSNSVGAFTNGTSKAYPLGFNPRMAKRVNFGVKCMAEEKVGGEPKLDSGL 60

Query: 61  PKPNPTV-SSPTSIPTPTPTPRPQPKKVSTNFRDLFAFSGPAPERINGRLAMIGFVAAIA 120
           PKPNPTV SSPTSI    PTPRPQPKKVSTNF DLFAFSGPAPERINGRLAMIGFVAAIA
Sbjct: 61  PKPNPTVSSSPTSI----PTPRPQPKKVSTNFTDLFAFSGPAPERINGRLAMIGFVAAIA 120

Query: 121 VELSNGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGR 180
           VELSNGTDLFTQIS GGSQWFLGTSIL S ASLVPLLQGSRAEAKT+GLMNANAELWNGR
Sbjct: 121 VELSNGTDLFTQISGGGSQWFLGTSILFSAASLVPLLQGSRAEAKTEGLMNANAELWNGR 180

Query: 181 IAMLGLVALAVTEIVKGGALV 201
           IAMLGLVALA TE V G ALV
Sbjct: 181 IAMLGLVALAFTEFVTGSALV 197

[Close]

BLAST of Spo12382.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QDX3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_190050 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 1.900e-95
Identity = 189/200 (94.50%), Postives = 192/200 (96.00%), Query Frame = 1

		  
Query: 1   MAMSMQVQAVLSNSVGAFTNGSSKAYPLGFNPRMCKRVNFGVKCMAEGGAGGQPKLDSGV 60
           MAMSMQVQA+LSNSVGAFTNG+SKAYPLGFNPRM KRVNFGVKCMAE  AGG+PKLDSGV
Sbjct: 1   MAMSMQVQALLSNSVGAFTNGTSKAYPLGFNPRMAKRVNFGVKCMAEEKAGGEPKLDSGV 60

Query: 61  PKPNPTVSSPTSIPTPTPTPRPQPKKVSTNFRDLFAFSGPAPERINGRLAMIGFVAAIAV 120
           PKPNPTVSSPT    P PTPRPQPKKVSTNFRDLFAFSGPAPERINGRLAMIGFVAAIAV
Sbjct: 61  PKPNPTVSSPT----PIPTPRPQPKKVSTNFRDLFAFSGPAPERINGRLAMIGFVAAIAV 120

Query: 121 ELSNGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRI 180
           ELSNGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRI
Sbjct: 121 ELSNGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRI 180

Query: 181 AMLGLVALAVTEIVKGGALV 201
           AMLGLVALAVTEIVKGGALV
Sbjct: 181 AMLGLVALAVTEIVKGGALV 196

[Close]

BLAST of Spo12382.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QZ64_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_124910 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 7.800e-94
Identity = 186/200 (93.00%), Postives = 189/200 (94.50%), Query Frame = 1

		  
Query: 1   MAMSMQVQAVLSNSVGAFTNGSSKAYPLGFNPRMCKRVNFGVKCMAEGGAGGQPKLDSGV 60
           MAMSMQVQA+LSNSVG F NGS KAYPLGFNPRM KRVNFGVKCMAE GAGG+PKLDS V
Sbjct: 1   MAMSMQVQALLSNSVGTFANGS-KAYPLGFNPRMAKRVNFGVKCMAEEGAGGEPKLDSSV 60

Query: 61  PKPNPTVSSPTSIPTPTPTPRPQPKKVSTNFRDLFAFSGPAPERINGRLAMIGFVAAIAV 120
           PKPNPT SSPT  P PTPTPRPQPKKVSTNF DLFAFSGPAPERINGRLAMIGFVAAIAV
Sbjct: 61  PKPNPTSSSPTPTPIPTPTPRPQPKKVSTNFTDLFAFSGPAPERINGRLAMIGFVAAIAV 120

Query: 121 ELSNGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRI 180
           ELSNGTDLFTQIS+GGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRI
Sbjct: 121 ELSNGTDLFTQISNGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRI 180

Query: 181 AMLGLVALAVTEIVKGGALV 201
           AMLGLVALAVTEIVKGGALV
Sbjct: 181 AMLGLVALAVTEIVKGGALV 199

[Close]

BLAST of Spo12382.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R401_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_109350 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 7.300e-92
Identity = 187/200 (93.50%), Postives = 190/200 (95.00%), Query Frame = 1

		  
Query: 1   MAMSMQVQAVLSNSVGAFTNGSSKAYPLGFNPRMCKRVNFGVKCMAEGGAGGQPKLDSGV 60
           MAMSMQVQA++SNSVGAFTNGS KAYPLGFNPRM KRVNFGVKCMAEG AGG+PKLDSGV
Sbjct: 1   MAMSMQVQALVSNSVGAFTNGS-KAYPLGFNPRMAKRVNFGVKCMAEG-AGGEPKLDSGV 60

Query: 61  PKPNPTVSSPTSIPTPTPTPRPQPKKVSTNFRDLFAFSGPAPERINGRLAMIGFVAAIAV 120
           PK NPTVSSPT    P PTPRPQPKKVSTNF DLFAFSGPAPERINGRLAMIGFVAAIAV
Sbjct: 61  PKSNPTVSSPT----PIPTPRPQPKKVSTNFTDLFAFSGPAPERINGRLAMIGFVAAIAV 120

Query: 121 ELSNGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRI 180
           ELSNGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRI
Sbjct: 121 ELSNGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRI 180

Query: 181 AMLGLVALAVTEIVKGGALV 201
           AMLGLVALAVTEIVKGGALV
Sbjct: 181 AMLGLVALAVTEIVKGGALV 194

[Close]

BLAST of Spo12382.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJR9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_176380 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 3.600e-91
Identity = 183/200 (91.50%), Postives = 191/200 (95.50%), Query Frame = 1

		  
Query: 1   MAMSMQVQAVLSNSVGAFTNGSSKAYPLGFNPRMCKRVNFGVKCMAEGGAGGQPKLDSGV 60
           MAMSMQVQA+LSNSVGAFTNGS+ AYPLGFNPRMCKRV+FGVKCMAE  AGG+PKL+SG+
Sbjct: 1   MAMSMQVQALLSNSVGAFTNGSN-AYPLGFNPRMCKRVSFGVKCMAEEKAGGEPKLNSGL 60

Query: 61  PKPNPTVSSPTSIPTPTPTPRPQPKKVSTNFRDLFAFSGPAPERINGRLAMIGFVAAIAV 120
           PKPNP+VSS TSI    PTPRPQPKKVSTNF DLFAFSGPAPERINGRLAMIGF+AAIAV
Sbjct: 61  PKPNPSVSSSTSI----PTPRPQPKKVSTNFTDLFAFSGPAPERINGRLAMIGFMAAIAV 120

Query: 121 ELSNGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRI 180
           ELSNGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRI
Sbjct: 121 ELSNGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRI 180

Query: 181 AMLGLVALAVTEIVKGGALV 201
           AMLGLVALAVTEIVKGGALV
Sbjct: 181 AMLGLVALAVTEIVKGGALV 195

[Close]

BLAST of Spo12382.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RAF4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_093280 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.300e-88
Identity = 179/201 (89.05%), Postives = 184/201 (91.54%), Query Frame = 1

		  
Query: 1   MAMSMQVQAVLSNSVGAFTNGSSKAYPLGFNPRMCKRVNFGVKCMAEGGAGGQPKLDSGV 60
           MAMSMQVQA+LSNSVGAFTNG+SKAYPLGFNPRM KRVNFGVKCMAE   GG+PKLDSG+
Sbjct: 1   MAMSMQVQALLSNSVGAFTNGTSKAYPLGFNPRMAKRVNFGVKCMAEEKVGGEPKLDSGL 60

Query: 61  PKPNPTV-SSPTSIPTPTPTPRPQPKKVSTNFRDLFAFSGPAPERINGRLAMIGFVAAIA 120
           PKPNPTV SSPTSI    PTPRPQPKKVSTNF DLFAFSGPAPERINGRLAMIGFVAAIA
Sbjct: 61  PKPNPTVSSSPTSI----PTPRPQPKKVSTNFTDLFAFSGPAPERINGRLAMIGFVAAIA 120

Query: 121 VELSNGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGR 180
           VELSNGTDLFTQIS GGSQWFLGTSIL S ASLVPLLQGSRAEAKT+GLMNANAELWNGR
Sbjct: 121 VELSNGTDLFTQISGGGSQWFLGTSILFSAASLVPLLQGSRAEAKTEGLMNANAELWNGR 180

Query: 181 IAMLGLVALAVTEIVKGGALV 201
           IAMLGLVALA TE V G ALV
Sbjct: 181 IAMLGLVALAFTEFVTGSALV 197

[Close]

BLAST of Spo12382.1 vs. ExPASy Swiss-Prot
Match: ELIP1_ARATH (Early light-induced protein 1, chloroplastic OS=Arabidopsis thaliana GN=ELIP1 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 8.700e-46
Identity = 102/197 (51.78%), Postives = 132/197 (67.01%), Query Frame = 1

		  
Query: 4   SMQVQAVLSNSVGAFTNGSSKAYPLGFNPRMCKRVNFGVKCMAEGGAGGQPKLDSGVPKP 63
           S  +Q+V +  +      ++K +  G  P + +    GV+CMAEGG    P  +   P P
Sbjct: 5   SFNMQSVFAGGLTTRKINTNKLFSAGSFPNLKRNYPVGVRCMAEGG----PTNEDSSPAP 64

Query: 64  NPTVSSPTSIPTPTPTPRPQPKKVSTNFRDLFAFSGPAPERINGRLAMIGFVAAIAVELS 123
           + + + P  +P     P P   KVST F DL AFSGPAPERINGRLAM+GFVAA+AVELS
Sbjct: 65  STSAAQP--LPKSPSPPPPMKPKVSTKFSDLLAFSGPAPERINGRLAMVGFVAALAVELS 124

Query: 124 NGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRIAML 183
            G ++  QISDGG  WFLGT+ +L++ASLVPL +G   E+K++G+M ++AELWNGR AML
Sbjct: 125 KGENVLAQISDGGVSWFLGTTAILTLASLVPLFKGISVESKSKGIMTSDAELWNGRFAML 184

Query: 184 GLVALAVTEIVKGGALV 201
           GLVALA TE VKGG LV
Sbjct: 185 GLVALAFTEFVKGGTLV 195

[Close]

BLAST of Spo12382.1 vs. ExPASy Swiss-Prot
Match: ELIP2_ARATH (Early light-induced protein 2, chloroplastic OS=Arabidopsis thaliana GN=ELIP2 PE=1 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 3.100e-43
Identity = 108/198 (54.55%), Postives = 134/198 (67.68%), Query Frame = 1

		  
Query: 4   SMQVQAVLSNSVGAFTNGSSKAYPLGFNPRMCKRVN-FGVKCMAEGGAGGQPKLDSGVPK 63
           S  +Q+V +   G  T  + +      N    KR+   GV+CMA+G      K D  VP 
Sbjct: 5   SFNMQSVFAAPSGVLTTRNIR----NTNQLFFKRIAPVGVRCMAQGDP---IKEDPSVPS 64

Query: 64  PNPTVSSPTSIPTPTPTPRPQPKKVSTNFRDLFAFSGPAPERINGRLAMIGFVAAIAVEL 123
            + T ++P  +P   P P  +PK VST F DL AFSGPAPERINGRLAM+GFVAAIA+EL
Sbjct: 65  TS-TSATPPQMPQSPPPPVSKPK-VSTKFGDLLAFSGPAPERINGRLAMVGFVAAIAMEL 124

Query: 124 SNGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRIAM 183
           S G ++F QISDGG  WFLGT+ LL++AS+VPL +G RAEAK++G M ++AELWNGR AM
Sbjct: 125 SKGENVFAQISDGGVGWFLGTTALLTLASMVPLFKGIRAEAKSKGFMTSDAELWNGRFAM 184

Query: 184 LGLVALAVTEIVKGGALV 201
           LGLVALA TE V GG LV
Sbjct: 185 LGLVALAFTEYVTGGTLV 193

[Close]

BLAST of Spo12382.1 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.000e-41
Identity = 107/207 (51.69%), Postives = 138/207 (66.67%), Query Frame = 1

		  
Query: 1   MAMSMQVQAVLSNSVGAFTNGSSKA-------YPLGFNPRMCKRVNFGVKCMAEGGAGGQ 60
           MA+S   Q+++SNS+   TN SS++        P  + P + + V+  V+ MAEG    Q
Sbjct: 1   MAVS-SCQSIMSNSM---TNISSRSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQ 60

Query: 61  PKLDSGVPKPNPTVSSPTSIPTPTPTPRPQPKKVSTNFRDLFAFSGPAPERINGRLAMIG 120
            K+   V    PT S+PT  P  T     +P K+ST F DL AFSGPAPERINGRLAMIG
Sbjct: 61  SKV--AVDPTTPTASTPTPQPAYT-----RPPKMSTKFSDLMAFSGPAPERINGRLAMIG 120

Query: 121 FVAAIAVELSNGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANA 180
           FVAA+ VE++ G  L  Q+S GG  WFLGTS+LLS+ASL+P  QG   E+K++ +M+++A
Sbjct: 121 FVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDA 180

Query: 181 ELWNGRIAMLGLVALAVTEIVKGGALV 201
           E WNGRIAMLGLVALA TE VKG +LV
Sbjct: 181 EFWNGRIAMLGLVALAFTEFVKGTSLV 196

[Close]

BLAST of Spo12382.1 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.500e-32
Identity = 74/122 (60.66%), Postives = 85/122 (69.67%), Query Frame = 1

		  
Query: 80  PRPQPKKVSTNFRDLFAFSGPAPERINGRLAMIGFVAAIAVELSNGTDLFTQISDG-GSQ 139
           P P   K ST+  D  AFSGPAPERINGRLAM+GFV A+AVE   G  L +Q+  G G  
Sbjct: 49  PPPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQA 108

Query: 140 WFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRIAMLGLVALAVTEIVKGGA 199
           WF  T  +LS+ASLVPLLQG  AE +   +MNANAELWNGR AMLGLVALA TEI+ G  
Sbjct: 109 WFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAP 168

Query: 200 LV 201
            +
Sbjct: 169 FI 170

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BLAST of Spo12382.1 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.600e-31
Identity = 80/156 (51.28%), Postives = 103/156 (66.03%), Query Frame = 1

		  
Query: 53  QPKLDSGVPKPNPTVS-SPTSIPTPTPT-----PRPQPKKVSTNFRDLFAFSGPAPERIN 112
           QP +DS     + + S SP+   +P+PT     P+P  KK + +  D  AFSGPAPERIN
Sbjct: 74  QPDMDSAKETTSASTSPSPSQYTSPSPTTIPAAPKPVTKKANPSVWDALAFSGPAPERIN 133

Query: 113 GRLAMIGFVAAIAVELSNGTDLFTQIS--DGGSQWFLGTSILLSVASLVPLLQGSRAEAK 172
           GRLAM+GFVAA++VE + G  L  Q+     G  WFL T+ + SVASL+PLLQG   E+K
Sbjct: 134 GRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESK 193

Query: 173 TQGLMNANAELWNGRIAMLGLVALAVTEIVKGGALV 201
           + G+ +A+AELWNGR AMLGLVALA TE + G   V
Sbjct: 194 SSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229

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BLAST of Spo12382.1 vs. TAIR (Arabidopsis)
Match: AT3G22840.1 (Chlorophyll A-B binding family protein)

HSP 1 Score: 184.9 bits (468), Expect = 4.900e-47
Identity = 102/197 (51.78%), Postives = 132/197 (67.01%), Query Frame = 1

		  
Query: 4   SMQVQAVLSNSVGAFTNGSSKAYPLGFNPRMCKRVNFGVKCMAEGGAGGQPKLDSGVPKP 63
           S  +Q+V +  +      ++K +  G  P + +    GV+CMAEGG    P  +   P P
Sbjct: 5   SFNMQSVFAGGLTTRKINTNKLFSAGSFPNLKRNYPVGVRCMAEGG----PTNEDSSPAP 64

Query: 64  NPTVSSPTSIPTPTPTPRPQPKKVSTNFRDLFAFSGPAPERINGRLAMIGFVAAIAVELS 123
           + + + P  +P     P P   KVST F DL AFSGPAPERINGRLAM+GFVAA+AVELS
Sbjct: 65  STSAAQP--LPKSPSPPPPMKPKVSTKFSDLLAFSGPAPERINGRLAMVGFVAALAVELS 124

Query: 124 NGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRIAML 183
            G ++  QISDGG  WFLGT+ +L++ASLVPL +G   E+K++G+M ++AELWNGR AML
Sbjct: 125 KGENVLAQISDGGVSWFLGTTAILTLASLVPLFKGISVESKSKGIMTSDAELWNGRFAML 184

Query: 184 GLVALAVTEIVKGGALV 201
           GLVALA TE VKGG LV
Sbjct: 185 GLVALAFTEFVKGGTLV 195

[Close]

BLAST of Spo12382.1 vs. TAIR (Arabidopsis)
Match: AT4G14690.1 (Chlorophyll A-B binding family protein)

HSP 1 Score: 176.4 bits (446), Expect = 1.700e-44
Identity = 108/198 (54.55%), Postives = 134/198 (67.68%), Query Frame = 1

		  
Query: 4   SMQVQAVLSNSVGAFTNGSSKAYPLGFNPRMCKRVN-FGVKCMAEGGAGGQPKLDSGVPK 63
           S  +Q+V +   G  T  + +      N    KR+   GV+CMA+G      K D  VP 
Sbjct: 5   SFNMQSVFAAPSGVLTTRNIR----NTNQLFFKRIAPVGVRCMAQGDP---IKEDPSVPS 64

Query: 64  PNPTVSSPTSIPTPTPTPRPQPKKVSTNFRDLFAFSGPAPERINGRLAMIGFVAAIAVEL 123
            + T ++P  +P   P P  +PK VST F DL AFSGPAPERINGRLAM+GFVAAIA+EL
Sbjct: 65  TS-TSATPPQMPQSPPPPVSKPK-VSTKFGDLLAFSGPAPERINGRLAMVGFVAAIAMEL 124

Query: 124 SNGTDLFTQISDGGSQWFLGTSILLSVASLVPLLQGSRAEAKTQGLMNANAELWNGRIAM 183
           S G ++F QISDGG  WFLGT+ LL++AS+VPL +G RAEAK++G M ++AELWNGR AM
Sbjct: 125 SKGENVFAQISDGGVGWFLGTTALLTLASMVPLFKGIRAEAKSKGFMTSDAELWNGRFAM 184

Query: 184 LGLVALAVTEIVKGGALV 201
           LGLVALA TE V GG LV
Sbjct: 185 LGLVALAFTEYVTGGTLV 193

The following BLAST results are available for this feature:

BLAST of Spo12382.1 vs. NCBI nr
BLAST of Spo12382.1 vs. UniProtKB/TrEMBL
BLAST of Spo12382.1 vs. ExPASy Swiss-Prot
BLAST of Spo12382.1 vs. TAIR (Arabidopsis)

BLAST of Spo12382.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902150947\|gb\|KNA05469.1\|	2.7e-95	94.5	hypothetical protein SOVF_1900...	[more]
gi\|902194451\|gb\|KNA12559.1\|	1.1e-93	93.0	hypothetical protein SOVF_1249...	[more]
gi\|902202340\|gb\|KNA14240.1\|	1.1e-91	93.5	hypothetical protein SOVF_1093...	[more]
gi\|902164229\|gb\|KNA06948.1\|	5.2e-91	91.5	hypothetical protein SOVF_1763...	[more]
gi\|902208596\|gb\|KNA15989.1\|	1.9e-88	89.0	hypothetical protein SOVF_0932...	[more]

BLAST of Spo12382.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9QDX3_SPIOL	1.9e-95	94.5	Uncharacterized protein OS=Spi...	[more]
A0A0K9QZ64_SPIOL	7.8e-94	93.0	Uncharacterized protein OS=Spi...	[more]
A0A0K9R401_SPIOL	7.3e-92	93.5	Uncharacterized protein OS=Spi...	[more]
A0A0K9QJR9_SPIOL	3.6e-91	91.5	Uncharacterized protein OS=Spi...	[more]
A0A0K9RAF4_SPIOL	1.3e-88	89.0	Uncharacterized protein OS=Spi...	[more]

BLAST of Spo12382.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
ELIP1_ARATH	8.7e-46	51.7	Early light-induced protein 1,...	[more]
ELIP2_ARATH	3.1e-43	54.5	Early light-induced protein 2,...	[more]
ELI_PEA	1.0e-41	51.6	Early light-induced protein, c...	[more]
ELI9_HORVU	5.5e-32	60.6	Low molecular mass early light...	[more]
ELI5_HORVU	1.6e-31	51.2	High molecular mass early ligh...	[more]

BLAST of Spo12382.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

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Match Name	E-value	Identity	Description
AT3G22840.1	4.9e-47	51.7	Chlorophyll A-B binding family...	[more]
AT4G14690.1	1.7e-44	54.5	Chlorophyll A-B binding family...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 101..152 score: 5.
IPR023329	Chlorophyll a/b binding protein domain	unknown	SSF103511	Chlorophyll a-b binding protein	coord: 75..196 score: 6.41
None	No IPR available	GENE3D	1.20.1620.10		coord: 171..198 score: 1.3E-4coord: 102..163 score: 3.
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 66..200 score: 1.6
None	No IPR available	PANTHER	PTHR14154:SF5	EARLY LIGHT-INDUCED PROTEIN 1, CHLOROPLASTIC-RELATED	coord: 66..200 score: 1.6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009812	flavonoid metabolic process
biological_process	GO:0009805	coumarin biosynthetic process
biological_process	GO:0009809	lignin biosynthetic process
biological_process	GO:0009811	stilbene biosynthetic process
biological_process	GO:0032957	inositol trisphosphate metabolic process
biological_process	GO:0051555	flavonol biosynthetic process
biological_process	GO:0009813	flavonoid biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0031418	L-ascorbic acid binding
molecular_function	GO:0045431	flavonol synthase activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0020037	heme binding
molecular_function	GO:0016711	flavonoid 3'-monooxygenase activity
molecular_function	GO:0051766	inositol trisphosphate kinase activity
molecular_function	GO:0047325	inositol tetrakisphosphate 1-kinase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016207	4-coumarate-CoA ligase activity
molecular_function	GO:0035251	UDP-glucosyltransferase activity
molecular_function	GO:0045486	naringenin 3-dioxygenase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo12380	0.86	Barchart \| Table
Spo12389	0.80	Barchart \| Table
Spo12383	0.78	Barchart \| Table
Spo05258	0.75	Barchart \| Table
Spo08467	0.73	Barchart \| Table
Spo12386	0.71	Barchart \| Table
Spo28091	0.70	Barchart \| Table
Spo12147	0.70	Barchart \| Table
Spo12385	0.69	Barchart \| Table
Spo10830	0.69	Barchart \| Table
Spo11270	0.68	Barchart \| Table
Spo05684	0.68	Barchart \| Table
Spo12869	0.68	Barchart \| Table
Spo13221	0.67	Barchart \| Table
Spo14346	0.67	Barchart \| Table
Spo22292	0.67	Barchart \| Table
Spo04424	0.66	Barchart \| Table
Spo10352	0.66	Barchart \| Table