Spo12408 (gene) | SpinachBase

Overview


Name	Spo12408
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Metal-dependent phosphohydrolase HD domain-containing protein
Location	SpoScf_02058 : 19994 .. 24461 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACGTGGCTCCTTCTGTCCGTTGGGACCAGCTGCTACAATGTCATCTGCAATTCTGGTGTGCACCTCTGGTGGGTTTGTTACACACTGTTTTCCATGGCACTCAGATCTATCTGGGGATAGTGAGTATGAAACTGGTAGTTCCCTGTTGAAGCACACCAGTTTAAGGAGGAGCATGGGAGTATAGTACGTATACACCTATTTGAAGGGGAGCGTAGGAGGGAATAGTACATCCTTTACTCTTCTGATTCTTGGTATTCTGTAGACTTTCGCTTCCTTTTCAACCACATTAACTTTGCCTCTTTTTACAACTCGTTGATGTGAGTTTGTAGTTGAACTATGAGCTTATTTGCAGGATTTTAAGTGTCTTTCCAGTATTTAAAGTGTACGGAGTATTTTTTAATGTTAGGCAGTTGGTTGATGGGTAATGGACATGGACCATTTTGTTAGCTTGTACTCCATAGAATTTTGTTCATTGAAGTGTTTCTCATTGAGGTAACACTACTCTATATTACTTGTACGTCTCAAGGTCGTTTATGTATTAGGATATCTGGGTTCAAGGTTAGGTGTAAGGTTTAAGGTTACATTTAAACTTGTCCGTTAGTCTGAGAATCTGTAAGTGCTTGAGCAATGGAAATCTCAAATATGCTCTTCTTTCCTTGTCTTTTTTTTCCCTATCAGTATCCTATAAATCCAGTAGACAGTAAAGGGGCAACAAAAGGTGCTTGTTTTTACCCCCTCATTCCATTTTCCCGGATGAATGGCACACATATCTCCTGTTCTTCAAGCTTAATTTTAGGAAAATGTCTTTCCTTAATGGCATGACAAGGTTAACAGTAATATTGGCCCCTAATTGGGAGTAGCATCTGTTATGGGATGGAGGGAACTGTAAGATGCAATGTGTGGTTCGAGGTGCTGCAATAAATTGACTATCAATCACAAGTATGCATATTTTTCATTAACACGTTGTTTGGATAAGAGGAAATGGAACGTAAGGGAGGTTAGGGAAGGGAAAGGAAAGAGAGGGGAACTAGCTCTCTTGTTTGGATAGGGGGTGGAGTGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAGGGGAGGAAGAGGAAGGATCCATATTCCCTCCCTCTTTAAGAAACATAATCCCTCCAAAGTTGGAGTGATTTGGACGGAAAATGGAGCTCCACCTTCCCTAGTTATCCAAACAAGTTTATCNAAGTTGGAGTGATTTGGACGGAAAATGGAGCTCCACCTTCCCTAGTTATCCAAACAAGTTTATCTTAATATCCTCAAGGCTAGAATTTTACCTTGTAGAAAAAACATTCATGAGACAGGATAAGCAAAGGTGACAGAGTGAAACAGGGTAGGCAAAGGCGTTATTTGTGCAAAACTGCAAATTAGGCAAGGTCTTTAGGTGATGCTGCTTTAACATATGTATTTGTCCTGTGATTATCAGTGTATTCACCTGATAAATGAGTATTAGTAACAACCGTTTTATTGCTCTCCTTCAACTTCTATATAACGTGTTGCTGTTTCTCCTTAAGTTTGATACAATTTCTCTTTTCCCCCCCTCCCTTTTCAGCAATTGTTGGTGATATTACACCTTGCGATGGGATTTCCAAGATGGAAAAGAACCGTAGAGAAAGTGAAGCACTTGACCATATGTGCAATCTCCTTGGTGGAGGATCGAGAGGTTCTTTCTGTGCTTTACTCTCATGCTGTTTCATTGTGTACTCTATTTCTGATGGATGTGGTGGTGGGGTCATGGAGGGGGAAGGAAAGACATATCAACCCCTTCCATTCATTTCCTTAGTGGAATATCCACAAGGGTTCCCTTGTTTCTTGATTGTTTGTGTTTCCTGAGCTATATTTACAAATTGCAGCCAACGAAATACATGATTTATGGATGGAGTATGAAGAAGGCGCATCACTCGAAGCAAAGGTTGTCAAGGATTTCGACAAAGTGCGTTCTACTTCTACGCTTTTCCCAACAATTTCCATTCTTTTGTGTCCTCTAAAATCACACTCCTTATTTTGTGCCATTGCATTGAGACTTTTGTTGTCTGGACATCAACTTTTATTGGTAAATGCATAATGCCATTTTCCTTAGGCTTCTGGCTGTATATGATAGAGATCTTCTAAGTTCTAGCTAGATCTATAATCATATGAATATGCAAAATGGCAAGTCATCTTTAAGACTTGTGTGGTGTAATGTGCCCTGTTTCATTTGCATCATATTATGGCTATATGTTAATGCATATTATACAGAGTAGTAATGTTACTGAACAAAGAAATTCGTGTTTTTTTCTTCACTAATCACTATAGCATATTATGCAGAGCAGTAATTATACCATGGTCCTTTGGAGGTTATTTTTCTACTGAACAAAGAAATTCGTGGTTTTTTCTTCACTAATCACTATATGTTAAAGCATATTATGCAGAGTAGTAATTATACCATGGTTCTGTGGAGGTTATTTAATCTTCCTCTTGTTTCTTATTTCCCTTTCCACTCTTCTTTGTTTCTTTTGAATGAGCAGGATGTATTACCACCGAAAATTTTGGGCATATTTGAATGTGCCCTTTTTTTCTTTTGTTAGTTCGGCAGCTAAATCATTGCATTAGAATAGATACCTAAAAGGTGTTTGTTGTATCATTGCATCACAAAATTTATTGTTTTCTTGCCATGTTATCAATTTATCACAGCAGCACAACTGAAACATTGGTCTGAAAATTGGTAGATTATGAAAGCGATTTGGATACTGAAAAATTGGATATAATCATTTGAGTAAAACCAAGTTCTCGTATAACTAACTATATAAGGTTATTGTTTGGTGTCTTGTTGTCATTCTAACATACCTTTTTTTTTTGGGTATTTCCTTCAGTTGGAGATGATACTTCAGGCGTCAGAGTATGAAAAAGGTGAGGCTGTCAGCAAAAGTGGTGATAAAAAACAATGGCAATGTTCGCTTTATTTAGCTAAATAAAAATGGTGCAAGAATCTTGTTTATGCTAGTATTACTGGTTTAAGTCAGGAAGGATGCTGAAATTTCTAATGGTTAATTACTCTTCTTTGCTCCTCTTTGAGATGCCATGTGCATTGAACTGCTAGGAGGCTTTTTAGCTAGTGGGAGTATTTCACTACTTTGCTCCTCTCTGGAAATTAATGTACTGCTTCTTGTTCTTTTTTGTCCTTGCACAGAACAAGGGAAGGATTTGGAGGAGTTTTTTCAGTCCACTGCTGGTAGGTTGATTCAACCTTCTTGTTCATACATACTTTCTGCAAGAATGTGGCAGTTTATTTATTTCTTCTAATATAAAAACTGTTGCTTGCTGGCTTACTACTATATGAGCTTCGGATTTGACAATACACCTATGCTTCTACCTTCACTGTGCGTAACATAGACACCGATATTTGGGTTTATCAACAGCCTGTTTGGTATAGGGGATCAGTTAAGGTAGTATCATGATGCATGAATGCCCTTAATAATACATCTGCTCTGACTAATCAATATTTTTCTTTTATCCTTTGTGTAACTGTATTTACACTAACGGAGCATTACTAGTAATGTGGTAATGAATGGATAGATATTAACTAAGAAAAAAAACTAGTTTGGGAGCTATGCGTAATACCATTTTACCAGACATTACATGGGGAATTCTTCGTGAAGTTACACAAACTGATTACTTGGCGGTAAACGAGTTAGCTTGTTTGAGATCATGCCAAACCCATCCTGTGGGACTTGCGTTTGGAACAAGATTAATGTATATCATAAGCATGGTTAATTTTATTAGGAAAAGGTGATACTATTTTTTGTTTAGACGCTCTGGTATATTAGGAAAAAGGAGTAGATTTTCTTCATTGAAATTGGTCCTCGGCTCATTAACTTTCAGAAAATTAAGGGATCACGAGCTCTTATTTTCACATTTTCTTCATTTTGCTAAGAGCCTTAGATTAGATGATGTAATCTCTAATTTGATTTGCTGAAATGACTCTTGTTTGCAGGGAAATTCCAGACTGATATCGGCAAAGCATGGGCATTGGAGATAGCATCAAGAAGAAATAAAAACTAAGTAGAGCAGCAGCATTTTTCAGCCTGCTTGGAGCTTTGCTTTGCAACATCATAAGGTCTGATGCTTTACATGTTCAGTTCATTTAAATATCATTAGAAGCTGGTGGTCTCAGGACAGTTGTTATTCTGAGGAAAATGTGCTTTGTCAACTAGTCTATGACTAATGCAGTAATGCTAGCACTAATTCAAGAGAACTCCATCAACATTGGTTATTGATTTTACGTCTTTTCTGTATCGACATCTTATTTGAGAGCATCTTATTGACAAAATGAAGCCCTTTGTGTACATTCTAGTTACAGGGAATTGAACCTCGAACACTGAGGTTGGATTGTTGGAAGGTGCCTTTCTTTCTGTTA

mRNA sequence

ATGCCACGTGGCTCCTTCTGTCCGTTGGGACCAGCTGCTACAATGTCATCTGCAATTCTGGTGTGCACCTCTGGTGGGTTTGTTACACACTGTTTTCCATGGCACTCAGATCTATCTGGGGATAGTGAGTATGAAACTGCAATTGTTGGTGATATTACACCTTGCGATGGGATTTCCAAGATGGAAAAGAACCGTAGAGAAAGTGAAGCACTTGACCATATGTGCAATCTCCTTGGTGGAGGATCGAGAGCCAACGAAATACATGATTTATGGATGGAGTATGAAGAAGGCGCATCACTCGAAGCAAAGGTTGTCAAGGATTTCGACAAATTGGAGATGATACTTCAGGCGTCAGAGTATGAAAAAGAACAAGGGAAGGATTTGGAGGAGTTTTTTCAGTCCACTGCTGGGAAATTCCAGACTGATATCGGCAAAGCATGGGCATTGGAGATAGCATCAAGAAGAAATAAAAACTAAGTAGAGCAGCAGCATTTTTCAGCCTGCTTGGAGCTTTGCTTTGCAACATCATAAGGTCTGATGCTTTACATGTTCAGTTCATTTAAATATCATTAGAAGCTGGTGGTCTCAGGACAGTTGTTATTCTGAGGAAAATGTGCTTTGTCAACTAGTCTATGACTAATGCAGTAATGCTAGCACTAATTCAAGAGAACTCCATCAACATTGGTTATTGATTTTACGTCTTTTCTGTATCGACATCTTATTTGAGAGCATCTTATTGACAAAATGAAGCCCTTTGTGTACATTCTAGTTACAGGGAATTGAACCTCGAACACTGAGGTTGGATTGTTGGAAGGTGCCTTTCTTTCTGTTA

Coding sequence (CDS)

ATGCCACGTGGCTCCTTCTGTCCGTTGGGACCAGCTGCTACAATGTCATCTGCAATTCTGGTGTGCACCTCTGGTGGGTTTGTTACACACTGTTTTCCATGGCACTCAGATCTATCTGGGGATAGTGAGTATGAAACTGCAATTGTTGGTGATATTACACCTTGCGATGGGATTTCCAAGATGGAAAAGAACCGTAGAGAAAGTGAAGCACTTGACCATATGTGCAATCTCCTTGGTGGAGGATCGAGAGCCAACGAAATACATGATTTATGGATGGAGTATGAAGAAGGCGCATCACTCGAAGCAAAGGTTGTCAAGGATTTCGACAAATTGGAGATGATACTTCAGGCGTCAGAGTATGAAAAAGAACAAGGGAAGGATTTGGAGGAGTTTTTTCAGTCCACTGCTGGGAAATTCCAGACTGATATCGGCAAAGCATGGGCATTGGAGATAGCATCAAGAAGAAATAAAAACTAA

Protein sequence

MPRGSFCPLGPAATMSSAILVCTSGGFVTHCFPWHSDLSGDSEYETAIVGDITPCDGISKMEKNRRESEALDHMCNLLGGGSRANEIHDLWMEYEEGASLEAKVVKDFDKLEMILQASEYEKEQGKDLEEFFQSTAGKFQTDIGKAWALEIASRRNKN

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo12408.1	Spo12408.1	mRNA

Homology

[Close]

BLAST of Spo12408.1 vs. NCBI nr
Match: gi|902157234|gb|KNA06105.1| (hypothetical protein SOVF_184100 [Spinacia oleracea])

HSP 1 Score: 224.6 bits (571), Expect = 1.300e-55
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 1

		  
Query: 47  AIVGDITPCDGISKMEKNRRESEALDHMCNLLGGGSRANEIHDLWMEYEEGASLEAKVVK 106
           AIVGDITPCDGISKMEKNRRESEALDHMCNLLGGGSRANEIHDLWMEYEEGASLEAKVVK
Sbjct: 134 AIVGDITPCDGISKMEKNRRESEALDHMCNLLGGGSRANEIHDLWMEYEEGASLEAKVVK 193

Query: 107 DFDKLEMILQASEYEKEQGKDLEEFFQSTAGKFQTDIGKAWALEIASRRNKN 159
           DFDKLEMILQA EYEKEQGKDLEEFFQSTAGKFQTDIGKAWALEIASRRNKN
Sbjct: 194 DFDKLEMILQALEYEKEQGKDLEEFFQSTAGKFQTDIGKAWALEIASRRNKN 245

[Close]

BLAST of Spo12408.1 vs. NCBI nr
Match: gi|731352710|ref|XP_010687679.1| (PREDICTED: HD domain-containing protein 2 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 201.8 bits (512), Expect = 8.700e-49
Identity = 98/112 (87.50%), Postives = 105/112 (93.75%), Query Frame = 1

		  
Query: 47  AIVGDITPCDGISKMEKNRRESEALDHMCNLLGGGSRANEIHDLWMEYEEGASLEAKVVK 106
           AIVGDITPCDGISKMEKNRRE EALDHMCN+LGGGSRA EI+ LWMEYEE +SLEAK+VK
Sbjct: 96  AIVGDITPCDGISKMEKNRREKEALDHMCNVLGGGSRAKEIYALWMEYEESSSLEAKIVK 155

Query: 107 DFDKLEMILQASEYEKEQGKDLEEFFQSTAGKFQTDIGKAWALEIASRRNKN 159
           DFDK+EMILQA EYEKEQGKDLEEFF+STAGKFQTD GKAWALEIASRR K+
Sbjct: 156 DFDKVEMILQALEYEKEQGKDLEEFFESTAGKFQTDTGKAWALEIASRRKKH 207

[Close]

BLAST of Spo12408.1 vs. NCBI nr
Match: gi|731352702|ref|XP_010687675.1| (PREDICTED: HD domain-containing protein 2 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 201.8 bits (512), Expect = 8.700e-49
Identity = 98/112 (87.50%), Postives = 105/112 (93.75%), Query Frame = 1

		  
Query: 47  AIVGDITPCDGISKMEKNRRESEALDHMCNLLGGGSRANEIHDLWMEYEEGASLEAKVVK 106
           AIVGDITPCDGISKMEKNRRE EALDHMCN+LGGGSRA EI+ LWMEYEE +SLEAK+VK
Sbjct: 100 AIVGDITPCDGISKMEKNRREKEALDHMCNVLGGGSRAKEIYALWMEYEESSSLEAKIVK 159

Query: 107 DFDKLEMILQASEYEKEQGKDLEEFFQSTAGKFQTDIGKAWALEIASRRNKN 159
           DFDK+EMILQA EYEKEQGKDLEEFF+STAGKFQTD GKAWALEIASRR K+
Sbjct: 160 DFDKVEMILQALEYEKEQGKDLEEFFESTAGKFQTDTGKAWALEIASRRKKH 211

[Close]

BLAST of Spo12408.1 vs. NCBI nr
Match: gi|559148716|gb|AHB08880.1| (HD domain-containing protein [Suaeda glauca])

HSP 1 Score: 192.2 bits (487), Expect = 6.900e-46
Identity = 95/111 (85.59%), Postives = 103/111 (92.79%), Query Frame = 1

		  
Query: 47  AIVGDITPCDGISKMEKNRRESEALDHMCNLLGGGSRANEIHDLWMEYEEGASLEAKVVK 106
           AIVGDITP DGISK+EK+RRE EALD MCNLLGGGSRA EI+DLWMEYEE ++ EAK+VK
Sbjct: 97  AIVGDITPSDGISKIEKSRREKEALDKMCNLLGGGSRAKEIYDLWMEYEECSTPEAKIVK 156

Query: 107 DFDKLEMILQASEYEKEQGKDLEEFFQSTAGKFQTDIGKAWALEIASRRNK 158
           DFDK+EMILQA EYEKEQGKDLEEFF+STAGKFQTDIGKAWALEIASRR K
Sbjct: 157 DFDKVEMILQALEYEKEQGKDLEEFFESTAGKFQTDIGKAWALEIASRRKK 207

[Close]

BLAST of Spo12408.1 vs. NCBI nr
Match: gi|226495659|ref|NP_001148228.1| (uncharacterized protein LOC100281836 precursor [Zea mays])

HSP 1 Score: 189.1 bits (479), Expect = 5.800e-45
Identity = 93/109 (85.32%), Postives = 98/109 (89.91%), Query Frame = 1

		  
Query: 47  AIVGDITPCDGISKMEKNRRESEALDHMCNLLGGGSRANEIHDLWMEYEEGASLEAKVVK 106
           AIVGDITP D + K EKNRRE EALDHMC LLGGGSRA EI +LWMEYEE ASLEAKVVK
Sbjct: 135 AIVGDITPSDNVPKEEKNRREKEALDHMCELLGGGSRAQEIRELWMEYEENASLEAKVVK 194

Query: 107 DFDKLEMILQASEYEKEQGKDLEEFFQSTAGKFQTDIGKAWALEIASRR 156
           DFDK+EMILQA EYEKEQG+DLEEFFQSTAGKFQTD+GKAWA EIASRR
Sbjct: 195 DFDKVEMILQALEYEKEQGRDLEEFFQSTAGKFQTDLGKAWAAEIASRR 243

[Close]

BLAST of Spo12408.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QFU2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_184100 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 8.700e-56
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 1

		  
Query: 47  AIVGDITPCDGISKMEKNRRESEALDHMCNLLGGGSRANEIHDLWMEYEEGASLEAKVVK 106
           AIVGDITPCDGISKMEKNRRESEALDHMCNLLGGGSRANEIHDLWMEYEEGASLEAKVVK
Sbjct: 134 AIVGDITPCDGISKMEKNRRESEALDHMCNLLGGGSRANEIHDLWMEYEEGASLEAKVVK 193

Query: 107 DFDKLEMILQASEYEKEQGKDLEEFFQSTAGKFQTDIGKAWALEIASRRNKN 159
           DFDKLEMILQA EYEKEQGKDLEEFFQSTAGKFQTDIGKAWALEIASRRNKN
Sbjct: 194 DFDKLEMILQALEYEKEQGKDLEEFFQSTAGKFQTDIGKAWALEIASRRNKN 245

[Close]

BLAST of Spo12408.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BUD6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g191950 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 6.100e-49
Identity = 98/112 (87.50%), Postives = 105/112 (93.75%), Query Frame = 1

		  
Query: 47  AIVGDITPCDGISKMEKNRRESEALDHMCNLLGGGSRANEIHDLWMEYEEGASLEAKVVK 106
           AIVGDITPCDGISKMEKNRRE EALDHMCN+LGGGSRA EI+ LWMEYEE +SLEAK+VK
Sbjct: 100 AIVGDITPCDGISKMEKNRREKEALDHMCNVLGGGSRAKEIYALWMEYEESSSLEAKIVK 159

Query: 107 DFDKLEMILQASEYEKEQGKDLEEFFQSTAGKFQTDIGKAWALEIASRRNKN 159
           DFDK+EMILQA EYEKEQGKDLEEFF+STAGKFQTD GKAWALEIASRR K+
Sbjct: 160 DFDKVEMILQALEYEKEQGKDLEEFFESTAGKFQTDTGKAWALEIASRRKKH 211

[Close]

BLAST of Spo12408.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BQR4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g191950 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 6.100e-49
Identity = 98/112 (87.50%), Postives = 105/112 (93.75%), Query Frame = 1

		  
Query: 47  AIVGDITPCDGISKMEKNRRESEALDHMCNLLGGGSRANEIHDLWMEYEEGASLEAKVVK 106
           AIVGDITPCDGISKMEKNRRE EALDHMCN+LGGGSRA EI+ LWMEYEE +SLEAK+VK
Sbjct: 96  AIVGDITPCDGISKMEKNRREKEALDHMCNVLGGGSRAKEIYALWMEYEESSSLEAKIVK 155

Query: 107 DFDKLEMILQASEYEKEQGKDLEEFFQSTAGKFQTDIGKAWALEIASRRNKN 159
           DFDK+EMILQA EYEKEQGKDLEEFF+STAGKFQTD GKAWALEIASRR K+
Sbjct: 156 DFDKVEMILQALEYEKEQGKDLEEFFESTAGKFQTDTGKAWALEIASRRKKH 207

[Close]

BLAST of Spo12408.1 vs. UniProtKB/TrEMBL
Match: V5PZR1_9CARY (HD domain-containing protein OS=Suaeda glauca PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.800e-46
Identity = 95/111 (85.59%), Postives = 103/111 (92.79%), Query Frame = 1

		  
Query: 47  AIVGDITPCDGISKMEKNRRESEALDHMCNLLGGGSRANEIHDLWMEYEEGASLEAKVVK 106
           AIVGDITP DGISK+EK+RRE EALD MCNLLGGGSRA EI+DLWMEYEE ++ EAK+VK
Sbjct: 97  AIVGDITPSDGISKIEKSRREKEALDKMCNLLGGGSRAKEIYDLWMEYEECSTPEAKIVK 156

Query: 107 DFDKLEMILQASEYEKEQGKDLEEFFQSTAGKFQTDIGKAWALEIASRRNK 158
           DFDK+EMILQA EYEKEQGKDLEEFF+STAGKFQTDIGKAWALEIASRR K
Sbjct: 157 DFDKVEMILQALEYEKEQGKDLEEFFESTAGKFQTDIGKAWALEIASRRKK 207

[Close]

BLAST of Spo12408.1 vs. UniProtKB/TrEMBL
Match: A0A0A9V6I5_ARUDO (Pco089793 OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.400e-45
Identity = 94/109 (86.24%), Postives = 98/109 (89.91%), Query Frame = 1

		  
Query: 47  AIVGDITPCDGISKMEKNRRESEALDHMCNLLGGGSRANEIHDLWMEYEEGASLEAKVVK 106
           AIVGDITP DG+ K EK+RRE EALDHMC LLGGGSRA EIH+LWMEYE  ASLEAKVVK
Sbjct: 10  AIVGDITPSDGVPKEEKSRREKEALDHMCELLGGGSRAQEIHELWMEYEANASLEAKVVK 69

Query: 107 DFDKLEMILQASEYEKEQGKDLEEFFQSTAGKFQTDIGKAWALEIASRR 156
           DFDK EMILQA EYEKEQG+DLEEFFQSTAGKFQTDIGKAWA EIASRR
Sbjct: 70  DFDKAEMILQALEYEKEQGQDLEEFFQSTAGKFQTDIGKAWAAEIASRR 118

[Close]

BLAST of Spo12408.1 vs. ExPASy Swiss-Prot
Match: HDDC2_DANRE (HD domain-containing protein 2 OS=Danio rerio GN=hddc2 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.800e-20
Identity = 54/94 (57.45%), Postives = 68/94 (72.34%), Query Frame = 1

		  
Query: 48  IVGDITPCDGISKMEKNRRESEALDHMCNLLGGGSRANEIHDLWMEYEEGASLEAKVVKD 107
           IVGDI P D +SK EK+RRE +A+ H+  LL  G R  EI++LW EYE  +S EAK+VK+
Sbjct: 70  IVGDIAPADNVSKAEKHRREKDAMVHITGLLDDGLR-KEIYNLWEEYETQSSPEAKLVKE 129

Query: 108 FDKLEMILQASEYEKEQGKD--LEEFFQSTAGKF 140
            D LEMI+QA EYE+ +GK   L+EFF ST GKF
Sbjct: 130 LDNLEMIIQAHEYEELEGKPGRLQEFFVSTEGKF 162

[Close]

BLAST of Spo12408.1 vs. ExPASy Swiss-Prot
Match: HDDC2_DICDI (HD domain-containing protein 2 homolog OS=Dictyostelium discoideum GN=hddc2 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.400e-17
Identity = 55/114 (48.25%), Postives = 69/114 (60.53%), Query Frame = 1

		  
Query: 47  AIVGDITPCDGISKMEKNRRESEALDHMCNLLGGGSRANEIHDLWMEYEEGASLEAKVVK 106
           ++VGD TP D I+K EK + E  A+  + N L G     EI DLW EYE+  + EA +VK
Sbjct: 77  SLVGDFTPHDKITKEEKYQLEKNAIIEITNTLSG-EVGKEIFDLWQEYEDCKTNEALLVK 136

Query: 107 DFDKLEMILQASEYEK-----EQGKDLEEFFQSTAGKFQTDIGKAWALEIASRR 156
           DFDK EMILQA EYEK     E    L+ FF ST GKF   + K+ AL++ S R
Sbjct: 137 DFDKFEMILQAYEYEKQPHQLENKIKLQSFFDSTRGKFHHPLFKSLALQLESDR 189

[Close]

BLAST of Spo12408.1 vs. ExPASy Swiss-Prot
Match: HDDC2_BOVIN (HD domain-containing protein 2 OS=Bos taurus GN=HDDC2 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.000e-17
Identity = 52/113 (46.02%), Postives = 69/113 (61.06%), Query Frame = 1

		  
Query: 48  IVGDITPCDGISKMEKNRRESEALDHMCNLLGGGSRANEIHDLWMEYEEGASLEAKVVKD 107
           IVGDI P D + + EK+RRE EA+  +  LL    +  E+++LW EYE  +S EAK VK 
Sbjct: 84  IVGDIAPADNVPREEKHRREEEAMKQLTQLLPEDLQ-KELYELWEEYETQSSAEAKFVKQ 143

Query: 108 FDKLEMILQASEYEKEQGKD--LEEFFQSTAGKFQTDIGKAWALEIASRRNKN 159
            D+ EMILQASEYE  + K   L++F+ STAGKF          E+ + RN N
Sbjct: 144 LDQCEMILQASEYEDLENKPGRLQDFYDSTAGKFSHPEIVQLVSELEAERNAN 195

[Close]

BLAST of Spo12408.1 vs. ExPASy Swiss-Prot
Match: HDDC2_HUMAN (HD domain-containing protein 2 OS=Homo sapiens GN=HDDC2 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.000e-17
Identity = 54/113 (47.79%), Postives = 69/113 (61.06%), Query Frame = 1

		  
Query: 48  IVGDITPCDGISKMEKNRRESEALDHMCNLLGGGSRANEIHDLWMEYEEGASLEAKVVKD 107
           IVGDI P D I K EK+RRE EA+  +  LL    R  E+++LW EYE  +S EAK VK 
Sbjct: 83  IVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLR-KELYELWEEYETQSSAEAKFVKQ 142

Query: 108 FDKLEMILQASEYEKEQGKD--LEEFFQSTAGKFQTDIGKAWALEIASRRNKN 159
            D+ EMILQASEYE  + K   L++F+ STAGKF          E+ + R+ N
Sbjct: 143 LDQCEMILQASEYEDLEHKPGRLQDFYDSTAGKFNHPEIVQLVSELEAERSTN 194

[Close]

BLAST of Spo12408.1 vs. ExPASy Swiss-Prot
Match: HDDC2_MOUSE (HD domain-containing protein 2 OS=Mus musculus GN=Hddc2 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.000e-17
Identity = 54/111 (48.65%), Postives = 68/111 (61.26%), Query Frame = 1

		  
Query: 48  IVGDITPCDGISKMEKNRRESEALDHMCNLLGGGSRANEIHDLWMEYEEGASLEAKVVKD 107
           IVGDI P D I K EK+RRE EA+  +  LL    R  E+++LW EYE  +S EAK VK 
Sbjct: 78  IVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLR-KELYELWEEYETQSSEEAKFVKQ 137

Query: 108 FDKLEMILQASEYEKEQGKD--LEEFFQSTAGKFQTDIGKAWALEIASRRN 157
            D+ EMILQASEYE  + K   L++F+ STAGKF          E+ + RN
Sbjct: 138 LDQCEMILQASEYEDLENKPGRLQDFYDSTAGKFSHPEIVQLVSELETERN 187

[Close]

BLAST of Spo12408.1 vs. TAIR (Arabidopsis)
Match: AT2G23820.2 (Metal-dependent phosphohydrolase)

HSP 1 Score: 177.9 bits (450), Expect = 4.700e-45
Identity = 89/111 (80.18%), Postives = 97/111 (87.39%), Query Frame = 1

		  
Query: 47  AIVGDITPCDGISKMEKNRRESEALDHMCNLLGGGSRANEIHDLWMEYEEGASLEAKVVK 106
           AIVGDITP  GISK EKNRRESEAL+HMC LLGGG RA EI +LW EYEE +S EAKVVK
Sbjct: 145 AIVGDITPSCGISKEEKNRRESEALEHMCKLLGGGERAKEIAELWREYEENSSPEAKVVK 204

Query: 107 DFDKLEMILQASEYEKEQGKDLEEFFQSTAGKFQTDIGKAWALEIASRRNK 158
           DFDK+E+ILQA EYE++QGKDLEEFFQSTAGKFQT+IGKAWA EI SRR K
Sbjct: 205 DFDKVELILQALEYEQDQGKDLEEFFQSTAGKFQTNIGKAWASEIVSRRRK 255

[Close]

BLAST of Spo12408.1 vs. TAIR (Arabidopsis)
Match: AT1G26160.1 (Metal-dependent phosphohydrolase)

HSP 1 Score: 156.0 bits (393), Expect = 1.900e-38
Identity = 77/109 (70.64%), Postives = 89/109 (81.65%), Query Frame = 1

		  
Query: 47  AIVGDITPCDGISKMEKNRRESEALDHMCNLLGGGSRANEIHDLWMEYEEGASLEAKVVK 106
           AIVGDITP DG+ K EK+RRE+ AL  MC +LGGG RA EI +LW+EYE  ASLEA +VK
Sbjct: 141 AIVGDITPSDGVPKEEKSRRETAALKEMCEVLGGGLRAEEITELWLEYENNASLEANIVK 200

Query: 107 DFDKLEMILQASEYEKEQGKDLEEFFQSTAGKFQTDIGKAWALEIASRR 156
           DFDK+EMILQA EYE E GK L+EFF STAGKFQT+IGK+WA EI +RR
Sbjct: 201 DFDKVEMILQALEYEAEHGKVLDEFFISTAGKFQTEIGKSWAAEINARR 249

The following BLAST results are available for this feature:

BLAST of Spo12408.1 vs. NCBI nr
BLAST of Spo12408.1 vs. UniProtKB/TrEMBL
BLAST of Spo12408.1 vs. ExPASy Swiss-Prot
BLAST of Spo12408.1 vs. TAIR (Arabidopsis)

BLAST of Spo12408.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902157234\|gb\|KNA06105.1\|	1.3e-55	99.1	hypothetical protein SOVF_1841...	[more]
gi\|731352710\|ref\|XP_010687679.1\|	8.7e-49	87.5	PREDICTED: HD domain-containin...	[more]
gi\|731352702\|ref\|XP_010687675.1\|	8.7e-49	87.5	PREDICTED: HD domain-containin...	[more]
gi\|559148716\|gb\|AHB08880.1\|	6.9e-46	85.5	HD domain-containing protein [...	[more]
gi\|226495659\|ref\|NP_001148228.1\|	5.8e-45	85.3	uncharacterized protein LOC100...	[more]

BLAST of Spo12408.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9QFU2_SPIOL	8.7e-56	99.1	Uncharacterized protein OS=Spi...	[more]
A0A0J8BUD6_BETVU	6.1e-49	87.5	Uncharacterized protein OS=Bet...	[more]
A0A0J8BQR4_BETVU	6.1e-49	87.5	Uncharacterized protein OS=Bet...	[more]
V5PZR1_9CARY	4.8e-46	85.5	HD domain-containing protein O...	[more]
A0A0A9V6I5_ARUDO	2.4e-45	86.2	Pco089793 OS=Arundo donax PE=4...	[more]

BLAST of Spo12408.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
HDDC2_DANRE	3.8e-20	57.4	HD domain-containing protein 2...	[more]
HDDC2_DICDI	1.4e-17	48.2	HD domain-containing protein 2...	[more]
HDDC2_BOVIN	3.0e-17	46.0	HD domain-containing protein 2...	[more]
HDDC2_HUMAN	3.0e-17	47.7	HD domain-containing protein 2...	[more]
HDDC2_MOUSE	3.0e-17	48.6	HD domain-containing protein 2...	[more]

BLAST of Spo12408.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

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Match Name	E-value	Identity	Description
AT2G23820.2	4.7e-45	80.1	Metal-dependent phosphohydrola...	[more]
AT1G26160.1	1.9e-38	70.6	Metal-dependent phosphohydrola...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006674	HD domain	GENE3D	1.10.3210.10		coord: 47..157 score: 2.0
IPR006674	HD domain	PFAM	PF13023	HD_3	coord: 47..146 score: 1.7
None	No IPR available	PANTHER	PTHR11845	UNCHARACTERIZED	coord: 47..158 score: 8.8
None	No IPR available	PANTHER	PTHR11845:SF15	SUBFAMILY NOT NAMED	coord: 47..158 score: 8.8
None	No IPR available	unknown	SSF109604	HD-domain/PDEase-like	coord: 47..150 score: 1.88

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006364	rRNA processing
biological_process	GO:0042793	plastid transcription
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0015995	chlorophyll biosynthetic process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0009536	plastid
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0051087	chaperone binding
molecular_function	GO:0008081	phosphoric diester hydrolase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003824	catalytic activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo02649	0.75	Barchart \| Table
Spo23228	0.72	Barchart \| Table
Spo04954	0.68	Barchart \| Table
Spo23415	0.67	Barchart \| Table
Spo05013	0.66	Barchart \| Table
Spo00275	0.66	Barchart \| Table
Spo14830	0.66	Barchart \| Table
Spo23626	0.65	Barchart \| Table
Spo07237	0.65	Barchart \| Table