Spo12421 (gene)

Overview
NameSpo12421
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_04665 : 1 .. 2110 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCATAGGGTTCTAAACTTTCACTTTCCTTTCTCATAATTCAGTCCATCAACTACCAAAACATTTCACTCCTAAAATCAATTTCAATTCGAAACTCTAAATTCTTAGAACGTGGTCGATGAACATCTGAATATTTCTGCAAAACTAGGGTATCAATTCTTCATAAAACGTTCAGATCTTCGCGATTTTTTGATCAATTTAATGCGATTTTAAGCAATTTAATTTGATTGTTGATGAGATTCTGGGCTATTTAAGCTGTTTGAGTTGATTGCTGATGAGATTTTGTGCGAATTTTTCTGTTATAATATGATTTTGTTGATTTTGGTACAACTTAGGGCTTTTTGTGCTATTTAAGATGTTTGAGTTGGTTGCTGATGTGATTTTGTGCGAATTTTTGTGTTATAATATGATTTTGTTGATTTTGGTCCAATTTGGGGTTTTTTGTGTAATCGATATGATTGATGTAAATATTACTATTTAGTTTTCCAATTATATTGCTGAGATTTTGACGTGTTCATGCTATTATTTGTTGAGTTTCAGAATGTTTTGTGAATATTTCTCATGGCTTGATTTTAAGCTTTGAATTTATGGACAATTTTCTCGACTTTTGATATTAGGTACTCCGTATTTATTTCTATAACGATACCAGGGATACTGGATCATGAAGCCAGAGGCCGATTCCTAATATGACAATCAGTTGCGAGCTGCAAATTCAGTTCGAGTATGCTTAAGAAACTCAATGGTTTGTGTTAGACCAACACTTTGTTAGTCACATTCTCCTAATTACTATTTTTTTGCCAAGAGGTTTATTTTCATTCTTTCTTTTATTCTTCTGGCGCTATTTAGAATTTGAAATCATGGTTTATCATCTTGAATTCTTGACATTGATTACACTAAACCTAGAACATCTTGACATTTGTGTATTTTCAGTTGTTCTTGACTTCTTGGGAATCTTAGCCCTAATTTTTCCGCCGGTGAAAAGTGGAAGCCCTTGAAGCAACCTAAGAAGGATAGACTGAGTTAGATGAGGTATAAAATTCTCCATAAGCATATCTTTTTTTTTTGTTAAATTTTGATTTAGGGTAATGAAAAATGAATTGGAGTTGGATTTTACTATTCATATAATATTCAAATTCAGAACCTTGCTCAGATATGCCTTCCTATTGGAATGGATGTTAGTAGAATATTGTATTGATTAGGTAATGAGTAGAACACACATTTTTTTGGTATATGAACTTTGCTCTGATATGACTGCCTATTTTTCTTTTGCCTCGTTGTTTTTAAAAATGTATGTTTTAACTTAATCATTTGATTCTATTTATTTAGTGAGAGAATAGGGGTGCATTTAGTTTCTGTTATGTTTTATACAAGAAGTTGTTATATGCTTTAGCCTTTTAGGTATTTGTTCCCAAGTTTCTATTTGTCTTATGCTTGCGGTCCAAGAAACTATCACGGGTTCTGCTTTCAATTTGGGAAATTATTGTTACAATTTTTTGCGCTTAGATACATGAATTTGTGTTTTTGATGGTAATGTATCGAAAATGACTTTTAAATAAAGTGCTACTTGCTGCTATATATGATATATAGGCTTTTAGCATGGTTGACAACTTGACGTGGATATCAATGGAGTATTAATTGGTGTCCTAGAGTGTAGCATTGAATATCTCTTCGTTGAAGTACGCTTTGTTATTTCTCTTAGAGATTGATGTTGTAATTTTGTCTAAAAGTCTTATCATATCTTGGTTGCCTCAGCTATTTTGTTTTACCTTTGCTATCCTGATTTCATTCTTTGTTGTATTCTTGTATGGTCATAGGTATTGTGGCATCTGACGCCGTAGACATCTTACCTCAGTCTGGCAGCCCTTGGAATTGCAAGCATTCAAGGACTGGTTGTTGCTTAAGAGAGATGATGTTGATCGTCATTTGTTATGTATAATACAGGAGAAAGGTAGACATCCACACAATAATGATCTATCTGCTCCATCTCCTCCAAGCAGAAATATGTATGGAACAGGTCAAGGATCAAGCCGTTGCTTGTATGGTTGTTACCTGTCTACAATAAAAGTTGAGCAAGAAGATAAAGCAACTAGATCTTTTGAAAAGGACTTATAG

mRNA sequence

CCATAGGGTTCTAAACTTTCACTTTCCTTTCTCATAATTCAGTCCATCAACTACCAAAACATTTCACTCCTAAAATCAATTTCAATTCGAAACTCTAAATTCTTAGAACGTGGTCGATGAACATCTGAATATTTCTGCAAAACTAGGGTACTCCGTATTTATTTCTATAACGATACCAGGGATACTGGATCATGAAGCCAGAGGCCGATTCCTAATATGACAATCAGTTGCGAGCTGCAAATTCAGTTCGAGTATGCTTAAGAAACTCAATGTTGTTCTTGACTTCTTGGGAATCTTAGCCCTAATTTTTCCGCCGGTGAAAAGTGGAAGCCCTTGAAGCAACCTAAGAAGGATAGACTGAGTTAGATGAGACATCTTACCTCAGTCTGGCAGCCCTTGGAATTGCAAGCATTCAAGGACTGGTTGTTGCTTAAGAGAGATGATGTTGATCGTCATTTGTTATGTATAATACAGGAGAAAGGTAGACATCCACACAATAATGATCTATCTGCTCCATCTCCTCCAAGCAGAAATATGTATGGAACAGGTCAAGGATCAAGCCGTTGCTTGTATGGTTGTTACCTGTCTACAATAAAAGTTGAGCAAGAAGATAAAGCAACTAGATCTTTTGAAAAGGACTTATAG

Coding sequence (CDS)

ATGAGACATCTTACCTCAGTCTGGCAGCCCTTGGAATTGCAAGCATTCAAGGACTGGTTGTTGCTTAAGAGAGATGATGTTGATCGTCATTTGTTATGTATAATACAGGAGAAAGGTAGACATCCACACAATAATGATCTATCTGCTCCATCTCCTCCAAGCAGAAATATGTATGGAACAGGTCAAGGATCAAGCCGTTGCTTGTATGGTTGTTACCTGTCTACAATAAAAGTTGAGCAAGAAGATAAAGCAACTAGATCTTTTGAAAAGGACTTATAG

Protein sequence

MRHLTSVWQPLELQAFKDWLLLKRDDVDRHLLCIIQEKGRHPHNNDLSAPSPPSRNMYGTGQGSSRCLYGCYLSTIKVEQEDKATRSFEKDL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo12421.1Spo12421.1mRNA


Homology
[Close]
BLAST of Spo12421.1 vs. NCBI nr
Match: gi|902229171|gb|KNA21403.1| (hypothetical protein SOVF_043130 [Spinacia oleracea])

HSP 1 Score: 83.2 bits (204), Expect = 2.600e-13
Identity = 44/73 (60.27%), Postives = 49/73 (67.12%), Query Frame = 1 

		  

Query: 23  KRDDVDRHLL-CIIQEKGRHPHNNDLSAPS------PPSRNMYGTGQGSSRCLYGCYLST 82
           +RDD DR L  C  QEK RHPHN+DLSAP       PPSR + G GQGSS C + C+LST
Sbjct: 421 QRDDADRLLFFCTRQEKDRHPHNDDLSAPPRWLRPPPPSRKISGIGQGSSPCSHDCHLST 480

Query: 83  IKVEQEDKATRSF 89
            K EQEDK TR F
Sbjct: 481 TKAEQEDKETRFF 493
[Close]
BLAST of Spo12421.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RPK0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_043130 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.800e-13
Identity = 44/73 (60.27%), Postives = 49/73 (67.12%), Query Frame = 1 

		  

Query: 23  KRDDVDRHLL-CIIQEKGRHPHNNDLSAPS------PPSRNMYGTGQGSSRCLYGCYLST 82
           +RDD DR L  C  QEK RHPHN+DLSAP       PPSR + G GQGSS C + C+LST
Sbjct: 421 QRDDADRLLFFCTRQEKDRHPHNDDLSAPPRWLRPPPPSRKISGIGQGSSPCSHDCHLST 480

Query: 83  IKVEQEDKATRSF 89
            K EQEDK TR F
Sbjct: 481 TKAEQEDKETRFF 493
The following BLAST results are available for this feature:
BLAST of Spo12421.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902229171|gb|KNA21403.1|2.6e-1360.2hypothetical protein SOVF_0431... [more]
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BLAST of Spo12421.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RPK0_SPIOL1.8e-1360.2Uncharacterized protein OS=Spi... [more]
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BLAST of Spo12421.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12421.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006370 7-methylguanosine mRNA capping
biological_process GO:0006189 'de novo' IMP biosynthetic process
biological_process GO:0006572 tyrosine catabolic process
biological_process GO:0042207 styrene catabolic process
biological_process GO:1902000 homogentisate catabolic process
biological_process GO:0015996 chlorophyll catabolic process
biological_process GO:0008219 cell death
biological_process GO:0009395 phospholipid catabolic process
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0006266 DNA ligation
biological_process GO:0009113 purine nucleobase biosynthetic process
biological_process GO:0006570 tyrosine metabolic process
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
biological_process GO:0006260 DNA replication
biological_process GO:0035335 peptidyl-tyrosine dephosphorylation
biological_process GO:0098507 polynucleotide 5' dephosphorylation
cellular_component GO:0005829 cytosol
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005634 nucleus
molecular_function GO:0004620 phospholipase activity
molecular_function GO:0008374 O-acyltransferase activity
molecular_function GO:0004651 polynucleotide 5'-phosphatase activity
molecular_function GO:0004725 protein tyrosine phosphatase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0004637 phosphoribosylamine-glycine ligase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003910 DNA ligase (ATP) activity
molecular_function GO:0004484 mRNA guanylyltransferase activity
molecular_function GO:0008138 protein tyrosine/serine/threonine phosphatase activity
molecular_function GO:0004334 fumarylacetoacetase activity
RNA-Seq Expression