Spo12462 (gene)

Overview
NameSpo12462
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRING zinc finger protein-like
Locationchr5 : 4675607 .. 4681530 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCCCCCCTTTCCCTTTTCTTGCTTCTTCCATGGTGAAACGATGTCGTATGATGCTGGTTATCAGTTTTTGCCGATCTGGTTATACCGTTTGAATTCTTGTTGACCAACCAAAACAACAAATATGGAAAAATAATAAGGCATTATAATTTGATATTCTCCGGAAAAGAGATTGAGATCAAAGATTCAACATCCGTATTTCTCTCTCCATCAATTTTGCTCGGTAAGATCACATCTTTTCCCTTTAATTTTAATTTTGCTATTTATTGAATCAATTAAATAAATGTCCAATGAAACGACCCTTCCCATCTTTTGATTTTACCCTTTGAGAGTTTGAGCATCTTCTGATTACCATGAAATTAAAATTTCGGATTTGTTTTTCTGGGGTTTTTGCAACTATTATTGTTATTAGTAAGTGATGTTAACTGACATGTAAGCTGAATTACCATGAAAATTAAAATTTTGTATTTGTTTTTCTGGGTTTTTTGCAATTGTTTTTGTTTCATTATTGATGGACATGCTAGTTTAGGGTAAGGAGAGCAAGTTTTGGGCGAAATAATCTCACACTAACTAACTTGTTGTAAGATGTCAAAGGTTTACACTTGAATTGATTAAAAAAGTCCCCCCAGTTTCGCGATAAAGTTATTGTAAAATCGTCTCATACAATATTTTGGCCTTTTAGGTTATAAACAAGTTATGTGAATGATCATGTTCTATATGATACTACAAGTGAATCCTGAGAAATGGTTTGGTTTGTTGGAATTATAGGCCCTCTTTTGCGAAGAGGAAGTTTAGTTAGTGATTTCAAAACTTTGCTTGATCAATTAGGTGATTGGATCGACAGATTTTGCAGGATAGAAGTTTGTTTTCGTCATATTTCCAAGCGTAGCTAGTTAATCTATGATTTCTGGTTTTTGCCTTTTTGGAGCCTGATTTGTGGAACAATTTGATTTATAGTGATTTGTAGAGCTGATAGTAGTTTGAAACTTTATATATGCGTGCTCATTGATATTTTCTAGTGTATTAATTAGAAGTTCTTGAATAATTAAGTGTTGATAGCTTTGGGCGAACTCGAATACACTAGTCTAGTACCCACATTCATAATATTGATCATTGTCCTCTGACTCATACATGCTACGGTCTTACTATGTCAACACACAAAAAGACATGAGTTTTATTGCTACATTAAGGACCTTATAGTGAATGAAAGAGTCCATGACATGTAGGTTTATGTTGTGTTCTTTTTGGGCATGTTTGGTATAAACTTAGGAAAGGAATTGGAAAGGAAATAAATATGAAGGGGAAAGGAATGTGTTAGCTATTACCAATATTAGTTGTTTGGTATACCTAAGGAAATGAATCACTTGTAACAAATTGGGGATTGAGGAGGATAACAATGTTGTTACCATATGGTAAGAAGAGGTAACAAATGGTGGTAATGGTTACCCTTAGGAAATGGATTGTATTATCACTCCTCTCATATCAAACATTAAGTAATGGAAATAGTTATTTGATTCCATTTACCTCGCTTAAAAACTCTATGCCAAACATGCTCTTTATGTTTAGTGGTTGAACATTGGTTCCAACTGTATAACTAACTAGTAAATTCTCATTGACCTAGAATGTGGAGTTTCCCAAATACAATCCCAAATCTTCGTCTTCGGAAGGTCTCTACTGAGCCGAAACTGTGTTGCTCTGATTTGTCGGATGAAGATACTGGATCAACTTCCAGCACAGAGGAAGGTCTAGAATGCCCGATTTGCTGGGAATCTTTCAATATTGTTGAGAATGTGCCTTATGTCTTATGGTGTGGCCACACACTCTGCCAGAATTGTGTTCTTGGACTTCAATGGGCTATTCTAAAGTTGCCTGCCCAGAAGATTAAGCTTCCATTTTTTGTTTCCTGTCCATGGTGCAACTTGTTATCTTTTAGATGGGTGTATAGAGGAAATCTTAAGTTTCCTCGGAAAAACTATTTTATCCTTTGGATGGTAGAGAGTTTGAATGGAGAGCGAGCTAAGTCTTCTTGTTCAGTACGTGATGATAATCGTCTAACTTTTTCACCAAGAGTAAGTTCTCTTATTGGTTGTCCAGCCAACAATCACAGTCCTAGGAGGGCTCAATATACTCAATCTCGAGGATTGTTGGGAAGCAACCTTGATGATGGCCGTGTTACTGGTAATATTAATGTGGAAAGGCCTCAGTTCTCACTTCACAAATCCCTTGATTACTTCATTCATGTTGCTTCTAAGTTCCCGCTGGTTATTCTTTTCTTGGTGATCATATTCTGTGTAATACCAGGAAGTGTGGCTATTCTGGTCCTGTATTTGCTAGTCAGTGTTTTATTAGCTCTGCCATCTATTTTGGTTCTGTACTTTGCTTACCCTACTTTGGATTGGTTATTGAGAGAAATCGCCAGCTAAGGGTTTGTTTGATTCCAGCAGTTTGTCCAATGAATTGGTGTGATTATTTGGAGTCATAAAGGCTCATATTGAATCGTGCTTCCCATATCTGGGTCTTTTATGGTTATTTGTGTTGTGATAAGTACTACTCTGTATTTCCTATGTCTAAATTACAATTCTATGGATTTCGATTCATTTGTGATTCTGTTTAGTCTGCCTGAGGGAACCTTAAACAGTTCATCGGGTCACTTAAACAGTTGTGCAGATTGCACCATTGATATATTCATATACCTGCTGCTACAACAGTTGTTCTGGGTGTATCTTGTAGGAGTGTCCAGTAAAGCAAAGCTGGAAAAGATTTTCCAGAAATACAGAAGACACTGTATCGAAAATTCTCAGTTGAGCATCATTCTAGTATATCAATAATTGGGTTGCACCTTGGAATTTAGTCTCCTTTAAATTACAACATTTTTCTTTTGATGTACACCTAAACACAAATTTAGAGCTTGATTTCTTTGTGGTAGAATATGATACTGCTATACCAGAAGAGCCTATGCAGTCAAGTCTCTGTTTCTCTAATAAATACGGAGTAAGCTTTTGAGATGATGTGATTCTGCGTCACGTTTTGTTGAATGAAGTTATTGATCATTTTTTTTCACGTCCCTTTTGTTTTTTATTTTATTTTAATGTAAGACTGGATCTCGATCATATTCCTTGAACTCCTGATTAATTGATTGAGTTTTTCTTCTCTGCAACAGATCAAGTGTTAAATAGAAGTATGTTGTAGCATAATTTACTTGCAATTCTTTTGAATGAATTTACTTGCAATTCTGTGTGCGCTCAAAAAAAGGTTGTTGCTTCATTAGCTTGGAGGTCCTATCATTTATGTTTGTGTTGCATGATTTTGTTGTTTTGGTAGCTGAGATGAACTGCGTACTATAGTTTTTAACTTTTGACGGGGAAATGTCCTGTATATGCTTTGCTACCCCTGTTATTTTGCTGTTATTCATACTGTGTCTTGCTATTTTAGTGTCTTTGGTTTTGTGATCTTTTCTGTTAGATGTCTCCCTCAAGATTCCCCAACCCAACCCAAACCAACCAAATTCTGCCTGTCTGATAGATGGAGTACTTCACATTTACTTGGCTCTTGATTGTGGTCATTTTAGAATGTTGTCTCTTTTCAGGGGAAGCTGTTTGGATGCAATTTCTGACATTTTTCTGTTGAGTTTGAAGTCTTGTCTGTCAGTTCTTGAAATTTTAGCTGCTGCTTTGTTTTACTTTTCCCGGTTTGATATATATTTCGAGGCCCGGTCATAGACCCATTGAACCATCAAGTGGGGATCCCACCTAGAGCAAGGTTTGGGGATGTTTAAAGTACACAATCTTACCCCAAATTGATGCTAATTGGTAGACTGTCCCCAAAAGACCCTTGCACAAACATTTTACTTGTTGAAATAACATTTGTTTATGATGCTGTCCATGTTAACTTGTAAAGTTGTAATACCAATAAATTTTCACACCTCATTCTTTGTTCAAACTGTATTGTACATATGACTTGCTTGTTACCTATTTACAGATAAATATGTTATAGTTTCCCCTTGATCGTCTTTTTGCAGACATCTTTGATGGAAAATGTGATAGAAAGTAATGTGGAAAGTCTGTTCATTTCCTCTGTGCTGTGGAAACTTGCTAAAATGCCATATTGATCTGTTTCCTTTACAAACAAAGGCACATTGGAGGCAGAGGAGGTTCTCCTGTTGCTCGGTATTTGTTAGCCTTGTCCATCACCTTGAGCTCTTCATTCCGCCTTTTTTCTTTTGCCTGTGCTCTTGCTCCGTCAGCTATTTGTTTTATACGTTCCATCTCGATTTGATAATTCTGCAATGCTTTGGCCTTCCTTTTTCCCTGATTACTCTGCGATTCTTGTAAGCAGATCTTCGTTAAAAAACCTTTCCTAATTTTATAGCAACTGGAGTCTTGCTTAGATTTAAAGCGAACCTCTTTTGTCTCCAATTTGCGTCTGGCTTTCTTCTTCTTCTTCTCTTCCCATTCTAGAATTGTTGCATTTAGTTTCTCATACCTGTGTATATAAAATACATATTAATATTTATATTCTAAAATTGCTACCCAATTTGGTTGTAGAACTTTGGGTATAGAAGTTCCCAATCTACCTTTGTTTAATTTTAGCCATTTCATCTATCTCCCACGCATCCGCATCCGCATCTGTATCTGTATCTGTCCTGCCACGCCGGGTTTCTTGTGCCCGTTTTGGCGGAGCAGTGGGCTGTATAAGTGGTGGAACTGATGGTGGGTGGCGGATTGGGGATGGTGGAAAGATTCCTGGTGCTGAACTTTCTTGTTTTCTGGTTTTGGAATTTTGCAACTGTTCTTCGCCAAAAGTTGAAGTCCTTCTCACAGATGGACTCCTTCCTTCACCAAAAGTCGGAGTCCTTTTCACAGATGGACTCTTTGTAGTGAAGGGAATGACTGGTTTCATTTTTTTGGCATCTTCTGGCTCTTCTTCATCAAAATTTGGAGTCATTTCAACGAAATTGTAGGGCATACTGGTATCATCTTGCTGCTCATCAGCAAAGGTCAGTCTCTTCTTTGGCATAGTTGGAATTCTTCTGATTGATGGTACTGGATGTATAGTTTTCTCCGGTATCATCTCTTTTTCCTCGGCATGATAATATTCATCTGATACAATCATGTAAATTCCTTCAACTAATTGAATTGTCAGGGAAAACAAGCTTGTTAAATTTTCCTGGTAAGCTTTTACCTGAGTTTCTTTTTAATGCTTCACCAGGTTCTGCTGCTGCAGCAATTCTGTCAACAATTCCACTTATGATTCTTGGTAAACTGAATTGTAGTCCTACATCCGGTGTTCTTTGATCCGTGTTGTCTGATTCTAGCGAAGTAATGGCGAAGGCAGCAGCTGCAACTGCTGCAGCATACTCAGCTTCCTCAGTCGGCTCTTTGAAACTCATTTGGCGCGGTAGTTGTCTCCTCGGCCACTTTTGAGGTTTCCTCCCTGCATATGGTAAGAGAGTTATATTTATAACTGTTTATTTCTTCATTTTTTTCTTTAACATACTGCTGTGTGATTTGCAAAAGCATAAACCTTACCTCCTCTGAAGGATGACGTCCTTCGGTCCCTTGTGCTGCCAAACTCTTCTTTCCCACTAAATCTCAACCTAACAGAAGCAAAAAAAATCAGTTAATAACGAGTTTACATAATATCAGTCATAAAAATCTCGAAATATATTAGCATTTACCCCTGGGGAAAACGAATACTGTTATTATTAGGAGTAATTGTGAAGGTACCTCACTTGATTGAGCAGACCTTCCATAAACGGATTCACCTTTCAAATGTGTAGTTTCGAAGAGCTTAGAAGAAACATGAAAGATATATATTGTGAATTGCAGTAGAGGTCAGGGCTCTTAATTTATAATTAAAAGTTGGGTAACTTGGGAAAACTTGGAAAGTGTTCTTAGGTTGATAATAAGGTAGATGGTGTTGGGCA

mRNA sequence

GGCCCCCCTTTCCCTTTTCTTGCTTCTTCCATGGTGAAACGATGTCGTATGATGCTGGTTATCAGTTTTTGCCGATCTGGTTATACCGTTTGAATTCTTGTTGACCAACCAAAACAACAAATATGGAAAAATAATAAGGCATTATAATTTGATATTCTCCGGAAAAGAGATTGAGATCAAAGATTCAACATCCGTATTTCTCTCTCCATCAATTTTGCTCGATGTGGAGTTTCCCAAATACAATCCCAAATCTTCGTCTTCGGAAGGTCTCTACTGAGCCGAAACTGTGTTGCTCTGATTTGTCGGATGAAGATACTGGATCAACTTCCAGCACAGAGGAAGGTCTAGAATGCCCGATTTGCTGGGAATCTTTCAATATTGTTGAGAATGTGCCTTATGTCTTATGGTGTGGCCACACACTCTGCCAGAATTGTGTTCTTGGACTTCAATGGGCTATTCTAAAGTTGCCTGCCCAGAAGATTAAGCTTCCATTTTTTGTTTCCTGTCCATGGTGCAACTTGTTATCTTTTAGATGGGTGTATAGAGGAAATCTTAAGTTTCCTCGGAAAAACTATTTTATCCTTTGGATGGTAGAGAGTTTGAATGGAGAGCGAGCTAAGTCTTCTTGTTCAGTACGTGATGATAATCGTCTAACTTTTTCACCAAGAGTAAGTTCTCTTATTGGTTGTCCAGCCAACAATCACAGTCCTAGGAGGGCTCAATATACTCAATCTCGAGGATTGTTGGGAAGCAACCTTGATGATGGCCGTGTTACTGGTAATATTAATGTGGAAAGGCCTCAGTTCTCACTTCACAAATCCCTTGATTACTTCATTCATGTTGCTTCTAAGTTCCCGCTGGTTATTCTTTTCTTGGTGATCATATTCTGTGTAATACCAGGAAGTGTGGCTATTCTGGTCCTGTATTTGCTAGTCAGTGTTTTATTAGCTCTGCCATCTATTTTGGTTCTGTACTTTGCTTACCCTACTTTGGATTGGTTATTGAGAGAAATCGCCAGCTAAGGGTTTGTTTGATTCCAGCAGTTTGTCCAATGAATTGGTGTGATTATTTGGAGTCATAAAGGCTCATATTGAATCGTGCTTCCCATATCTGGGTCTTTTATGGTTATTTGTGTTGTGATAAGTACTACTCTGTATTTCCTATGTCTAAATTACAATTCTATGGATTTCGATTCATTTGTGATTCTGTTTAGTCTGCCTGAGGGAACCTTAAACAGTTCATCGGGTCACTTAAACAGTTGTGCAGATTGCACCATTGATATATTCATATACCTGCTGCTACAACAGTTGTTCTGGGTGTATCTTGTAGGAGTGTCCAGTAAAGCAAAGCTGGAAAAGATTTTCCAGAAATACAGAAGACACTGTATCGAAAATTCTCAGTTGAGCATCATTCTAGTATATCAATAATTGGGTTGCACCTTGGAATTTAGTCTCCTTTAAATTACAACATTTTTCTTTTGATGTACACCTAAACACAAATTTAGAGCTTGATTTCTTTGTGGTAGAATATGATACTGCTATACCAGAAGAGCCTATGCAGTCAAGTCTCTGTTTCTCTAATAAATACGGAGTAAGCTTTTGAGATGATGTGATTCTGCGTCACGTTTTGTTGAATGAAGTTATTGATCATTTTTTTTCACGTCCCTTTTGTTTTTTATTTTATTTTAATGTAAGACTGGATCTCGATCATATTCCTTGAACTCCTGATTAATTGATTGAGTTTTTCTTCTCTGCAACAGATCAAGTGTTAAATAGAAGTATGTTGTAGCATAATTTACTTGCAATTCTTTTGAATGAATTTACTTGCAATTCTGTGTGCGCTCAAAAAAAGGTTGTTGCTTCATTAGCTTGGAGGTCCTATCATTTATGTTTGTGTTGCATGATTTTGTTGTTTTGGTAGCTGAGATGAACTGCGTACTATAGTTTTTAACTTTTGACGGGGAAATGTCCTGTATATGCTTTGCTACCCCTGTTATTTTGCTGTTATTCATACTGTGTCTTGCTATTTTAGTGTCTTTGGTTTTGTGATCTTTTCTGTTAGATGTCTCCCTCAAGATTCCCCAACCCAACCCAAACCAACCAAATTCTGCCTGTCTGATAGATGGAGTACTTCACATTTACTTGGCTCTTGATTGTGGTCATTTTAGAATGTTGTCTCTTTTCAGGGGAAGCTGTTTGGATGCAATTTCTGACATTTTTCTGTTGAGTTTGAAGTCTTGTCTGTCAGTTCTTGAAATTTTAGCTGCTGCTTTGTTTTACTTTTCCCGGTTTGATATATATTTCGAGGCCCGGTCATAGACCCATTGAACCATCAAGTGGGGATCCCACCTAGAGCAAGGTTTGGGGATGTTTAAAGTACACAATCTTACCCCAAATTGATGCTAATTGGTAGACTGTCCCCAAAAGACCCTTGCACAAACATTTTACTTGTTGAAATAACATTTGTTTATGATGCTGTCCATGTTAACTTGTAAAGTTGTAATACCAATAAATTTTCACACCTCATTCTTTGTTCAAACTGTATTGTACATATGACTTGCTTGTTACCTATTTACAGATAAATATGTTATAGTTTCCCCTTGATCGTCTTTTTGCAGACATCTTTGATGGAAAATGTGATAGAAAGTAATGTGGAAAGTCTGTTCATTTCCTCTGTGCTGTGGAAACTTGCTAAAATGCCATATTGATCTGTTTCCTTTACAAACAAAGGCACATTGGAGGCAGAGGAGGTTCTCCTGTTGCTCGGTATTTGTTAGCCTTGTCCATCACCTTGAGCTCTTCATTCCGCCTTTTTTCTTTTGCCTGTGCTCTTGCTCCGTCAGCTATTTGTTTTATACGTTCCATCTCGATTTGATAATTCTGCAATGCTTTGGCCTTCCTTTTTCCCTGATTACTCTGCGATTCTTGTAAGCAGATCTTCGTTAAAAAACCTTTCCTAATTTTATAGCAACTGGAGTCTTGCTTAGATTTAAAGCGAACCTCTTTTGTCTCCAATTTGCGTCTGGCTTTCTTCTTCTTCTTCTCTTCCCATTCTAGAATTGTTGCATTTAGTTTCTCATACCTGTGTATATAAAATACATATTAATATTTATATTCTAAAATTGCTACCCAATTTGGTTGTAGAACTTTGGGTATAGAAGTTCCCAATCTACCTTTGTTTAATTTTAGCCATTTCATCTATCTCCCACGCATCCGCATCCGCATCTGTATCTGTATCTGTCCTGCCACGCCGGGTTTCTTGTGCCCGTTTTGGCGGAGCAGTGGGCTGTATAAGTGGTGGAACTGATGGTGGGTGGCGGATTGGGGATGGTGGAAAGATTCCTGGTGCTGAACTTTCTTGTTTTCTGGTTTTGGAATTTTGCAACTGTTCTTCGCCAAAAGTTGAAGTCCTTCTCACAGATGGACTCCTTCCTTCACCAAAAGTCGGAGTCCTTTTCACAGATGGACTCTTTGTAGTGAAGGGAATGACTGGTTTCATTTTTTTGGCATCTTCTGGCTCTTCTTCATCAAAATTTGGAGTCATTTCAACGAAATTGTAGGGCATACTGGTATCATCTTGCTGCTCATCAGCAAAGGTCAGTCTCTTCTTTGGCATAGTTGGAATTCTTCTGATTGATGGTACTGGATGTATAGTTTTCTCCGGTATCATCTCTTTTTCCTCGGCATGATAATATTCATCTGATACAATCATGTAAATTCCTTCAACTAATTGAATTGTCAGGGAAAACAAGCTTGTTAAATTTTCCTGGTAAGCTTTTACCTGAGTTTCTTTTTAATGCTTCACCAGGTTCTGCTGCTGCAGCAATTCTGTCAACAATTCCACTTATGATTCTTGGTAAACTGAATTGTAGTCCTACATCCGGTGTTCTTTGATCCGTGTTGTCTGATTCTAGCGAAGTAATGGCGAAGGCAGCAGCTGCAACTGCTGCAGCATACTCAGCTTCCTCAGTCGGCTCTTTGAAACTCATTTGGCGCGGTAGTTGTCTCCTCGGCCACTTTTGAGGTTTCCTCCCTGCATATGGTAAGAGAGTTATATTTATAACTGTTTATTTCTTCATTTTTTTCTTTAACATACTGCTGTGTGATTTGCAAAAGCATAAACCTTACCTCCTCTGAAGGATGACGTCCTTCGGTCCCTTGTGCTGCCAAACTCTTCTTTCCCACTAAATCTCAACCTAACAGAAGCAAAAAAAATCAGTTAATAACGAGTTTACATAATATCAGTCATAAAAATCTCGAAATATATTAGCATTTACCCCTGGGGAAAACGAATACTGTTATTATTAGGAGTAATTGTGAAGGTACCTCACTTGATTGAGCAGACCTTCCATAAACGGATTCACCTTTCAAATGTGTAGTTTCGAAGAGCTTAGAAGAAACATGAAAGATATATATTGTGAATTGCAGTAGAGGTCAGGGCTCTTAATTTATAATTAAAAGTTGGGTAACTTGGGAAAACTTGGAAAGTGTTCTTAGGTTGATAATAAGGTAGATGGTGTTGGGCA

Coding sequence (CDS)

ATGTGGAGTTTCCCAAATACAATCCCAAATCTTCGTCTTCGGAAGGTCTCTACTGAGCCGAAACTGTGTTGCTCTGATTTGTCGGATGAAGATACTGGATCAACTTCCAGCACAGAGGAAGGTCTAGAATGCCCGATTTGCTGGGAATCTTTCAATATTGTTGAGAATGTGCCTTATGTCTTATGGTGTGGCCACACACTCTGCCAGAATTGTGTTCTTGGACTTCAATGGGCTATTCTAAAGTTGCCTGCCCAGAAGATTAAGCTTCCATTTTTTGTTTCCTGTCCATGGTGCAACTTGTTATCTTTTAGATGGGTGTATAGAGGAAATCTTAAGTTTCCTCGGAAAAACTATTTTATCCTTTGGATGGTAGAGAGTTTGAATGGAGAGCGAGCTAAGTCTTCTTGTTCAGTACGTGATGATAATCGTCTAACTTTTTCACCAAGAGTAAGTTCTCTTATTGGTTGTCCAGCCAACAATCACAGTCCTAGGAGGGCTCAATATACTCAATCTCGAGGATTGTTGGGAAGCAACCTTGATGATGGCCGTGTTACTGGTAATATTAATGTGGAAAGGCCTCAGTTCTCACTTCACAAATCCCTTGATTACTTCATTCATGTTGCTTCTAAGTTCCCGCTGGTTATTCTTTTCTTGGTGATCATATTCTGTGTAATACCAGGAAGTGTGGCTATTCTGGTCCTGTATTTGCTAGTCAGTGTTTTATTAGCTCTGCCATCTATTTTGGTTCTGTACTTTGCTTACCCTACTTTGGATTGGTTATTGAGAGAAATCGCCAGCTAA

Protein sequence

MWSFPNTIPNLRLRKVSTEPKLCCSDLSDEDTGSTSSTEEGLECPICWESFNIVENVPYVLWCGHTLCQNCVLGLQWAILKLPAQKIKLPFFVSCPWCNLLSFRWVYRGNLKFPRKNYFILWMVESLNGERAKSSCSVRDDNRLTFSPRVSSLIGCPANNHSPRRAQYTQSRGLLGSNLDDGRVTGNINVERPQFSLHKSLDYFIHVASKFPLVILFLVIIFCVIPGSVAILVLYLLVSVLLALPSILVLYFAYPTLDWLLREIAS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo12462.1Spo12462.1mRNA


Homology
[Close]
BLAST of Spo12462.1 vs. NCBI nr
Match: gi|902228425|gb|KNA21093.1| (hypothetical protein SOVF_046410 [Spinacia oleracea])

HSP 1 Score: 539.7 bits (1389), Expect = 3.000e-150
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 1 

		  

Query: 1   MWSFPNTIPNLRLRKVSTEPKLCCSDLSDEDTGSTSSTEEGLECPICWESFNIVENVPYV 60
           MWSFPNTIPNLRLRKVSTEPKLCCSDLSDEDTGSTSSTEEGLECPICWESFNIVENVPYV
Sbjct: 1   MWSFPNTIPNLRLRKVSTEPKLCCSDLSDEDTGSTSSTEEGLECPICWESFNIVENVPYV 60

Query: 61  LWCGHTLCQNCVLGLQWAILKLPAQKIKLPFFVSCPWCNLLSFRWVYRGNLKFPRKNYFI 120
           LWCGHTLCQNCVLGLQWAILKLPAQKIKLPFFVSCPWCNLLSFRWVYRGNLKFPRKNYFI
Sbjct: 61  LWCGHTLCQNCVLGLQWAILKLPAQKIKLPFFVSCPWCNLLSFRWVYRGNLKFPRKNYFI 120

Query: 121 LWMVESLNGERAKSSCSVRDDNRLTFSPRVSSLIGCPANNHSPRRAQYTQSRGLLGSNLD 180
           LWMVESLNGERAKSSCSVRDDNRLTFSPRVSSLIGCPANNHSPRRAQYTQSRGLLGSNLD
Sbjct: 121 LWMVESLNGERAKSSCSVRDDNRLTFSPRVSSLIGCPANNHSPRRAQYTQSRGLLGSNLD 180

Query: 181 DGRVTGNINVERPQFSLHKSLDYFIHVASKFPLVILFLVIIFCVIPGSVAILVLYLLVSV 240
           DGRVTGNINVERPQFSLHKSLDYFIHVASKFPLVILFLVIIFCVIPGSVAILVLYLLVSV
Sbjct: 181 DGRVTGNINVERPQFSLHKSLDYFIHVASKFPLVILFLVIIFCVIPGSVAILVLYLLVSV 240

Query: 241 LLALPSILVLYFAYPTLDWLLREIAS 267
           LLALPSILVLYFAYPTLDWLLREIAS
Sbjct: 241 LLALPSILVLYFAYPTLDWLLREIAS 266
[Close]
BLAST of Spo12462.1 vs. NCBI nr
Match: gi|731339237|ref|XP_010680745.1| (PREDICTED: uncharacterized protein LOC104895822 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 464.5 bits (1194), Expect = 1.200e-127
Identity = 230/266 (86.47%), Postives = 244/266 (91.73%), Query Frame = 1 

		  

Query: 1   MWSFPNTIPNLRLRKVSTEPKLCCSDLSDEDTGSTSSTEEGLECPICWESFNIVENVPYV 60
           MWSFPN+IPNLRLRKVSTEP LCC+DLSDEDTGS+SS EEGLECPICWESFNIVENVPYV
Sbjct: 3   MWSFPNSIPNLRLRKVSTEPNLCCTDLSDEDTGSSSSREEGLECPICWESFNIVENVPYV 62

Query: 61  LWCGHTLCQNCVLGLQWAILKLPAQKIKLPFFVSCPWCNLLSFRWVYRGNLKFPRKNYFI 120
           LWCGHTLC+NCVLGLQWA+L LPAQKI+LPFFVSCPWCNLLSFRWVYRG LK+PRKNYFI
Sbjct: 63  LWCGHTLCKNCVLGLQWAVLTLPAQKIRLPFFVSCPWCNLLSFRWVYRGILKYPRKNYFI 122

Query: 121 LWMVESLNGERAKSSCSVRDDNRLTFSPRVSSLIGCPANNHSPRRAQYTQSRGLLGSNLD 180
           LWMVESLNGER KSS SVRDD +  FSPRVSS IGC ANNHSPRRA++TQ  G  GSN D
Sbjct: 123 LWMVESLNGEREKSSSSVRDDRQPAFSPRVSSRIGCSANNHSPRRARHTQ--GWSGSNPD 182

Query: 181 DGRVTGNINVERPQFSLHKSLDYFIHVASKFPLVILFLVIIFCVIPGSVAILVLYLLVSV 240
           D RV G +NVERPQFSLHKSLDYFIHVASKFPLVILFL IIF VIPGSVAILVLYLLV+V
Sbjct: 183 DSRVAGYVNVERPQFSLHKSLDYFIHVASKFPLVILFLAIIFFVIPGSVAILVLYLLVTV 242

Query: 241 LLALPSILVLYFAYPTLDWLLREIAS 267
           LLALPS L+LYFAYPTL+WLLREIAS
Sbjct: 243 LLALPSFLILYFAYPTLEWLLREIAS 266
[Close]
BLAST of Spo12462.1 vs. NCBI nr
Match: gi|870857429|gb|KMT08989.1| (hypothetical protein BVRB_6g137000 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 464.5 bits (1194), Expect = 1.200e-127
Identity = 230/266 (86.47%), Postives = 244/266 (91.73%), Query Frame = 1 

		  

Query: 1   MWSFPNTIPNLRLRKVSTEPKLCCSDLSDEDTGSTSSTEEGLECPICWESFNIVENVPYV 60
           MWSFPN+IPNLRLRKVSTEP LCC+DLSDEDTGS+SS EEGLECPICWESFNIVENVPYV
Sbjct: 1   MWSFPNSIPNLRLRKVSTEPNLCCTDLSDEDTGSSSSREEGLECPICWESFNIVENVPYV 60

Query: 61  LWCGHTLCQNCVLGLQWAILKLPAQKIKLPFFVSCPWCNLLSFRWVYRGNLKFPRKNYFI 120
           LWCGHTLC+NCVLGLQWA+L LPAQKI+LPFFVSCPWCNLLSFRWVYRG LK+PRKNYFI
Sbjct: 61  LWCGHTLCKNCVLGLQWAVLTLPAQKIRLPFFVSCPWCNLLSFRWVYRGILKYPRKNYFI 120

Query: 121 LWMVESLNGERAKSSCSVRDDNRLTFSPRVSSLIGCPANNHSPRRAQYTQSRGLLGSNLD 180
           LWMVESLNGER KSS SVRDD +  FSPRVSS IGC ANNHSPRRA++TQ  G  GSN D
Sbjct: 121 LWMVESLNGEREKSSSSVRDDRQPAFSPRVSSRIGCSANNHSPRRARHTQ--GWSGSNPD 180

Query: 181 DGRVTGNINVERPQFSLHKSLDYFIHVASKFPLVILFLVIIFCVIPGSVAILVLYLLVSV 240
           D RV G +NVERPQFSLHKSLDYFIHVASKFPLVILFL IIF VIPGSVAILVLYLLV+V
Sbjct: 181 DSRVAGYVNVERPQFSLHKSLDYFIHVASKFPLVILFLAIIFFVIPGSVAILVLYLLVTV 240

Query: 241 LLALPSILVLYFAYPTLDWLLREIAS 267
           LLALPS L+LYFAYPTL+WLLREIAS
Sbjct: 241 LLALPSFLILYFAYPTLEWLLREIAS 264
[Close]
BLAST of Spo12462.1 vs. NCBI nr
Match: gi|502094166|ref|XP_004490155.1| (PREDICTED: uncharacterized protein LOC101500598 [Cicer arietinum])

HSP 1 Score: 311.6 bits (797), Expect = 1.300e-81
Identity = 156/269 (57.99%), Postives = 210/269 (78.07%), Query Frame = 1 

		  

Query: 1   MWSFPN-TIPNLRLRKVSTEPKLCCSDLSDEDTGSTSSTEEGLECPICWESFNIVENVPY 60
           MW+F +  + ++R+++ STEP L C++ SD++  S +S +EGLECPICWESFNIVENVPY
Sbjct: 1   MWNFASHALTSIRMKRSSTEPILSCAECSDDEVCSNASRDEGLECPICWESFNIVENVPY 60

Query: 61  VLWCGHTLCQNCVLGLQWAILKLPAQKIKLPFFVSCPWCNLLSFRWVYRGNLKFPRKNYF 120
           VLWCGHTLC+NCVLGLQWA++K P Q+IK+PFF+SCPWC+LLSFR++Y+GN+KFPRKN+F
Sbjct: 61  VLWCGHTLCKNCVLGLQWAVMKFPTQQIKIPFFISCPWCHLLSFRFIYKGNMKFPRKNFF 120

Query: 121 ILWMVESLNGERAK--SSCSVRDDNRLTFSPRVSSLIGCPANNHSPRRAQYTQSRGLLGS 180
           +LWMVESLNG+R K  SSC    D++  +SP+  +L+G  + + S RR   + S G LGS
Sbjct: 121 LLWMVESLNGDRHKAVSSCV---DSQPIWSPK-GNLLGSQSTSCSLRRPSISHSSGRLGS 180

Query: 181 NLDDGRVTGNINVERPQFSLHKSLDYFIHVASKFPLVILFLVIIFCVIPGSVAILVLYLL 240
           N ++    G  + ER  F LHKSLD+F+H  SKFPLVI+FL+I F VIP SV IL++Y L
Sbjct: 181 NNNN---VGVSDGERHYFCLHKSLDFFLHFTSKFPLVIIFLLIAFFVIPCSVVILIIYFL 240

Query: 241 VSVLLALPSILVLYFAYPTLDWLLREIAS 267
           ++++ A+PS LVLYFAYPT+  L+REI +
Sbjct: 241 LTIVFAIPSFLVLYFAYPTIQRLVREITT 262
[Close]
BLAST of Spo12462.1 vs. NCBI nr
Match: gi|661895824|emb|CDP00402.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 310.1 bits (793), Expect = 3.800e-81
Identity = 158/268 (58.96%), Postives = 200/268 (74.63%), Query Frame = 1 

		  

Query: 1   MW-SFPNTIPNLRLRKV-STEPKLCCSDLSDEDTGSTSSTEEGLECPICWESFNIVENVP 60
           MW S  N   +   +KV S+E  +C  D SD++  S SS EEGLECPICWESFNIVENVP
Sbjct: 77  MWKSLANAFGSFGQKKVTSSESLVCIEDSSDDEVCSNSSAEEGLECPICWESFNIVENVP 136

Query: 61  YVLWCGHTLCQNCVLGLQWAILKLPAQKIKLPFFVSCPWCNLLSFRWVYRGNLKFPRKNY 120
           YVLWCGHTLC+NCVLGL+WA LK   Q+I++P F+SCPWCNLL+FR +Y+GNLKFP KN+
Sbjct: 137 YVLWCGHTLCKNCVLGLKWAALKFSTQQIQIPLFISCPWCNLLTFRLIYKGNLKFPSKNF 196

Query: 121 FILWMVESLNGERAKSSCSVRDDNRLTFSPRVSSLIGCPANNHSPRRAQYTQSRGLLGSN 180
           F+LWMVES NG+R KSS S+  D ++ +SPR +S++G P +N   RR       G+ GSN
Sbjct: 197 FLLWMVESRNGDRVKSSSSICADPQV-WSPRCTSVMGNPTSNIVHRR---FHRLGISGSN 256

Query: 181 LDDGRVTGNINVERPQFSLHKSLDYFIHVASKFPLVILFLVIIFCVIPGSVAILVLYLLV 240
            +D  V    N+ERPQFS  KSLDYF+  ++KFPLVI+FL+I+   +P S AIL+LYLL+
Sbjct: 257 SNDDPVGNTNNLERPQFSFQKSLDYFLQFSAKFPLVIVFLLIVLFALPSSAAILMLYLLI 316

Query: 241 SVLLALPSILVLYFAYPTLDWLLREIAS 267
           +++ ALP+ LVLYFAYP LDWL REI S
Sbjct: 317 TIVFALPAFLVLYFAYPALDWLAREITS 340
[Close]
BLAST of Spo12462.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RNN5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_046410 PE=4 SV=1)

HSP 1 Score: 539.7 bits (1389), Expect = 2.100e-150
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 1 

		  

Query: 1   MWSFPNTIPNLRLRKVSTEPKLCCSDLSDEDTGSTSSTEEGLECPICWESFNIVENVPYV 60
           MWSFPNTIPNLRLRKVSTEPKLCCSDLSDEDTGSTSSTEEGLECPICWESFNIVENVPYV
Sbjct: 1   MWSFPNTIPNLRLRKVSTEPKLCCSDLSDEDTGSTSSTEEGLECPICWESFNIVENVPYV 60

Query: 61  LWCGHTLCQNCVLGLQWAILKLPAQKIKLPFFVSCPWCNLLSFRWVYRGNLKFPRKNYFI 120
           LWCGHTLCQNCVLGLQWAILKLPAQKIKLPFFVSCPWCNLLSFRWVYRGNLKFPRKNYFI
Sbjct: 61  LWCGHTLCQNCVLGLQWAILKLPAQKIKLPFFVSCPWCNLLSFRWVYRGNLKFPRKNYFI 120

Query: 121 LWMVESLNGERAKSSCSVRDDNRLTFSPRVSSLIGCPANNHSPRRAQYTQSRGLLGSNLD 180
           LWMVESLNGERAKSSCSVRDDNRLTFSPRVSSLIGCPANNHSPRRAQYTQSRGLLGSNLD
Sbjct: 121 LWMVESLNGERAKSSCSVRDDNRLTFSPRVSSLIGCPANNHSPRRAQYTQSRGLLGSNLD 180

Query: 181 DGRVTGNINVERPQFSLHKSLDYFIHVASKFPLVILFLVIIFCVIPGSVAILVLYLLVSV 240
           DGRVTGNINVERPQFSLHKSLDYFIHVASKFPLVILFLVIIFCVIPGSVAILVLYLLVSV
Sbjct: 181 DGRVTGNINVERPQFSLHKSLDYFIHVASKFPLVILFLVIIFCVIPGSVAILVLYLLVSV 240

Query: 241 LLALPSILVLYFAYPTLDWLLREIAS 267
           LLALPSILVLYFAYPTLDWLLREIAS
Sbjct: 241 LLALPSILVLYFAYPTLDWLLREIAS 266
[Close]
BLAST of Spo12462.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C9R8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g137000 PE=4 SV=1)

HSP 1 Score: 464.5 bits (1194), Expect = 8.400e-128
Identity = 230/266 (86.47%), Postives = 244/266 (91.73%), Query Frame = 1 

		  

Query: 1   MWSFPNTIPNLRLRKVSTEPKLCCSDLSDEDTGSTSSTEEGLECPICWESFNIVENVPYV 60
           MWSFPN+IPNLRLRKVSTEP LCC+DLSDEDTGS+SS EEGLECPICWESFNIVENVPYV
Sbjct: 1   MWSFPNSIPNLRLRKVSTEPNLCCTDLSDEDTGSSSSREEGLECPICWESFNIVENVPYV 60

Query: 61  LWCGHTLCQNCVLGLQWAILKLPAQKIKLPFFVSCPWCNLLSFRWVYRGNLKFPRKNYFI 120
           LWCGHTLC+NCVLGLQWA+L LPAQKI+LPFFVSCPWCNLLSFRWVYRG LK+PRKNYFI
Sbjct: 61  LWCGHTLCKNCVLGLQWAVLTLPAQKIRLPFFVSCPWCNLLSFRWVYRGILKYPRKNYFI 120

Query: 121 LWMVESLNGERAKSSCSVRDDNRLTFSPRVSSLIGCPANNHSPRRAQYTQSRGLLGSNLD 180
           LWMVESLNGER KSS SVRDD +  FSPRVSS IGC ANNHSPRRA++TQ  G  GSN D
Sbjct: 121 LWMVESLNGEREKSSSSVRDDRQPAFSPRVSSRIGCSANNHSPRRARHTQ--GWSGSNPD 180

Query: 181 DGRVTGNINVERPQFSLHKSLDYFIHVASKFPLVILFLVIIFCVIPGSVAILVLYLLVSV 240
           D RV G +NVERPQFSLHKSLDYFIHVASKFPLVILFL IIF VIPGSVAILVLYLLV+V
Sbjct: 181 DSRVAGYVNVERPQFSLHKSLDYFIHVASKFPLVILFLAIIFFVIPGSVAILVLYLLVTV 240

Query: 241 LLALPSILVLYFAYPTLDWLLREIAS 267
           LLALPS L+LYFAYPTL+WLLREIAS
Sbjct: 241 LLALPSFLILYFAYPTLEWLLREIAS 264
[Close]
BLAST of Spo12462.1 vs. UniProtKB/TrEMBL
Match: A0A068TWH3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00032334001 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 2.700e-81
Identity = 158/268 (58.96%), Postives = 200/268 (74.63%), Query Frame = 1 

		  

Query: 1   MW-SFPNTIPNLRLRKV-STEPKLCCSDLSDEDTGSTSSTEEGLECPICWESFNIVENVP 60
           MW S  N   +   +KV S+E  +C  D SD++  S SS EEGLECPICWESFNIVENVP
Sbjct: 77  MWKSLANAFGSFGQKKVTSSESLVCIEDSSDDEVCSNSSAEEGLECPICWESFNIVENVP 136

Query: 61  YVLWCGHTLCQNCVLGLQWAILKLPAQKIKLPFFVSCPWCNLLSFRWVYRGNLKFPRKNY 120
           YVLWCGHTLC+NCVLGL+WA LK   Q+I++P F+SCPWCNLL+FR +Y+GNLKFP KN+
Sbjct: 137 YVLWCGHTLCKNCVLGLKWAALKFSTQQIQIPLFISCPWCNLLTFRLIYKGNLKFPSKNF 196

Query: 121 FILWMVESLNGERAKSSCSVRDDNRLTFSPRVSSLIGCPANNHSPRRAQYTQSRGLLGSN 180
           F+LWMVES NG+R KSS S+  D ++ +SPR +S++G P +N   RR       G+ GSN
Sbjct: 197 FLLWMVESRNGDRVKSSSSICADPQV-WSPRCTSVMGNPTSNIVHRR---FHRLGISGSN 256

Query: 181 LDDGRVTGNINVERPQFSLHKSLDYFIHVASKFPLVILFLVIIFCVIPGSVAILVLYLLV 240
            +D  V    N+ERPQFS  KSLDYF+  ++KFPLVI+FL+I+   +P S AIL+LYLL+
Sbjct: 257 SNDDPVGNTNNLERPQFSFQKSLDYFLQFSAKFPLVIVFLLIVLFALPSSAAILMLYLLI 316

Query: 241 SVLLALPSILVLYFAYPTLDWLLREIAS 267
           +++ ALP+ LVLYFAYP LDWL REI S
Sbjct: 317 TIVFALPAFLVLYFAYPALDWLAREITS 340
[Close]
BLAST of Spo12462.1 vs. UniProtKB/TrEMBL
Match: G7JXW5_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_5g043680 PE=4 SV=2)

HSP 1 Score: 307.4 bits (786), Expect = 1.700e-80
Identity = 153/267 (57.30%), Postives = 207/267 (77.53%), Query Frame = 1 

		  

Query: 1   MWSFPN-TIPNLRLRKVSTEPKLCCSDLSDEDTGSTSSTEEGLECPICWESFNIVENVPY 60
           MW+F +  + ++ +++ STEP L C++ SD++  S +S +EGLECPICWESFNIVENVPY
Sbjct: 2   MWNFASHALTSIGMKRSSTEPILSCAECSDDEVCSNASKDEGLECPICWESFNIVENVPY 61

Query: 61  VLWCGHTLCQNCVLGLQWAILKLPAQKIKLPFFVSCPWCNLLSFRWVYRGNLKFPRKNYF 120
           VLWCGHTLC+NCVLGLQWA++K P Q+I++PFFVSCPWC+LLSFR++Y+GN+KFPRKN+F
Sbjct: 62  VLWCGHTLCKNCVLGLQWAVMKFPTQQIRIPFFVSCPWCHLLSFRFIYKGNMKFPRKNFF 121

Query: 121 ILWMVESLNGERAKSSCSVRDDNRLTFSPRVSSLIGCPANNHSPRRAQYTQSRGLLGSNL 180
           +LWMVESLNG+R K + S   D++  +SP+V +L+G      SP R+  +     LGSN 
Sbjct: 122 LLWMVESLNGDRHK-AVSASVDSQPIWSPKV-NLLGSQGTGCSPSRSSSSHCSEQLGSN- 181

Query: 181 DDGRVTGNINVERPQFSLHKSLDYFIHVASKFPLVILFLVIIFCVIPGSVAILVLYLLVS 240
               V G+ + ER  FSLHKSLD+F+H  SKFPLVI+FL+I F VIP S+ IL++Y L++
Sbjct: 182 --NAVRGS-DRERHYFSLHKSLDFFLHFTSKFPLVIIFLLIAFFVIPCSIVILIIYFLLT 241

Query: 241 VLLALPSILVLYFAYPTLDWLLREIAS 267
           ++ A+PS +VLYFAYPT+  L+REI S
Sbjct: 242 IIFAIPSFIVLYFAYPTIQRLVREITS 262
[Close]
BLAST of Spo12462.1 vs. UniProtKB/TrEMBL
Match: A0A059AQH8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01986 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 4.700e-78
Identity = 150/266 (56.39%), Postives = 191/266 (71.80%), Query Frame = 1 

		  

Query: 1   MWSF-PNTIP-NLRLRKVSTEPKLCCSDLSDEDTGSTSSTEEGLECPICWESFNIVENVP 60
           MW+F PN I  N   +    +     S+ SD++  S  S EEGLECPICWESFNIVENVP
Sbjct: 1   MWNFGPNNIAGNAGSKSEHRKSTQAGSECSDDEVSSIISREEGLECPICWESFNIVENVP 60

Query: 61  YVLWCGHTLCQNCVLGLQWAILKLPAQKIKLPFFVSCPWCNLLSFRWVYRGNLKFPRKNY 120
           YVLWCGHTLC+NC+LGLQWA++K P   I+LP F+SCPWCNLLSFR VY+GNLKFPRKNY
Sbjct: 61  YVLWCGHTLCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLSFRLVYKGNLKFPRKNY 120

Query: 121 FILWMVESLNGERAKSSCSVRDDNRLTFSPRVSSLIGCPANNHSPRRAQYTQSRGLLGSN 180
           F+LWMVES+NG+R K   S  +D +  +S   +  +G   +  + RR Q+       GS+
Sbjct: 121 FLLWMVESMNGDRGKVCSSFCEDRQPQWSSNGNPSLGSRVSRGNLRRVQHVHRTESAGSS 180

Query: 181 LDDGRVTGNINVERPQFSLHKSLDYFIHVASKFPLVILFLVIIFCVIPGSVAILVLYLLV 240
            D  RV  ++N+ER   SL KSL +F+H+ +KFPLVI+FL+I+   IP S AIL LY+L+
Sbjct: 181 HDQNRVNVSLNMERIHSSLRKSLVFFVHLTAKFPLVIIFLLIVLYAIPASAAILALYMLI 240

Query: 241 SVLLALPSILVLYFAYPTLDWLLREI 265
           +VL ALPS L+LYFAYP+LDWL+REI
Sbjct: 241 TVLFALPSFLILYFAYPSLDWLVREI 266
[Close]
BLAST of Spo12462.1 vs. TAIR (Arabidopsis)
Match: AT1G69330.1 (RING/U-box superfamily protein)

HSP 1 Score: 266.5 bits (680), Expect = 1.700e-71
Identity = 146/275 (53.09%), Postives = 185/275 (67.27%), Query Frame = 1 

		  

Query: 1   MWSFP-NTIPNLRLRKVSTEPKLCCSDLSDEDTGSTSSTEEGLECPICWESFNIVENVPY 60
           MW F  N I ++ L+K   +     S  SD++  + S  EEGLECPICWESFNIVENVPY
Sbjct: 1   MWGFASNVIGSMGLKKSPKDSAQASSQCSDDEVSNISRDEEGLECPICWESFNIVENVPY 60

Query: 61  VLWCGHTLCQNCVLGLQWAILKLPAQKIKLPFFVSCPWCNLLSFRWVYRGNLKFPRKNYF 120
           VLWCGHTLCQNCV GLQ A+L+L +Q I++PFFVSCPWC LLSFR VY+GNLKFPRKN+F
Sbjct: 61  VLWCGHTLCQNCVFGLQSAVLRLSSQDIRIPFFVSCPWCQLLSFRIVYKGNLKFPRKNFF 120

Query: 121 ILWMVESLN------GERAKSSCSVRDDNRLTFSPRVSSLIGCPANNHS--PRRAQYTQS 180
           +LWMVESLN      G+R      V D+ +   +PR S  +G  ++N++   R     QS
Sbjct: 121 LLWMVESLNGDRTSHGDRTSHGSLVTDNQQSAPTPRCSMSLGNHSSNNNLVARPLLRNQS 180

Query: 181 RGLLGSNLDDGRVTGNINVERPQFSLHKSLDYFIHVASKFPLVILFLVIIFCVIPGSVAI 240
             LL  +    + +      R  FS HKSLD+FI   SKFP VI+FL+I+F  IPGS+ I
Sbjct: 181 TDLLPHHDHSNQPS------RQLFSFHKSLDFFISFTSKFPFVIIFLLIVFFAIPGSLII 240

Query: 241 LVLYLLVSVLLALPSILVLYFAYPTLDWLLREIAS 267
           L LY L+++L A+P+ LVLYFAYP L+ L+ EI S
Sbjct: 241 LALYFLLTILFAVPAGLVLYFAYPILERLVNEITS 269
[Close]
BLAST of Spo12462.1 vs. TAIR (Arabidopsis)
Match: AT3G29270.1 (RING/U-box superfamily protein)

HSP 1 Score: 262.7 bits (670), Expect = 2.500e-70
Identity = 135/242 (55.79%), Postives = 172/242 (71.07%), Query Frame = 1 

		  

Query: 25  SDLSDEDTGSTSSTEEGLECPICWESFNIVENVPYVLWCGHTLCQNCVLGLQWAILKLPA 84
           ++ SD+D  S  S +EGLECPICWESFNIVENVPYVLWCGHT+C+NC+LGLQWAI+KLP 
Sbjct: 35  AECSDDDVSSVGSKDEGLECPICWESFNIVENVPYVLWCGHTMCKNCILGLQWAIVKLPT 94

Query: 85  QKIKLPFFVSCPWCNLLSFRWVYRGNLKFPRKNYFILWMVESLNGERAKSSCSVRDDNRL 144
             ++LP F+SCPWCNLLSFR V+RG L+FP KNYF+LWMVE +NGER  S    + D   
Sbjct: 95  HPVQLPLFISCPWCNLLSFRLVFRGTLRFPHKNYFVLWMVERMNGERRNSPGGAQTDGNN 154

Query: 145 TFSPRVSSLIGCPANNHSPRRAQYTQSRGLLGSNLDDGRVTGNINVERPQFSLHKSLDYF 204
             +    S   C  N H   R+Q   SR     +++D R+      +  Q SL KSL +F
Sbjct: 155 DHTRETPS--PCLHNRH--HRSQPEPSR-----SVNDHRIPR----DNIQTSLRKSLVFF 214

Query: 205 IHVASKFPLVILFLVIIFCVIPGSVAILVLYLLVSVLLALPSILVLYFAYPTLDWLLREI 264
           + + +KFPLV++FL+II   IP S AIL +Y+LV++LLALPS L+LYFAYP LDWL+REI
Sbjct: 215 VQLTAKFPLVVIFLLIILYAIPTSAAILAMYILVTLLLALPSFLILYFAYPCLDWLVREI 263

Query: 265 AS 267
            +
Sbjct: 275 VT 263
[Close]
BLAST of Spo12462.1 vs. TAIR (Arabidopsis)
Match: AT1G74370.1 (RING/U-box superfamily protein)

HSP 1 Score: 204.5 bits (519), Expect = 8.000e-53
Identity = 115/254 (45.28%), Postives = 164/254 (64.57%), Query Frame = 1 

		  

Query: 15  KVSTEPKLCCSDLSDEDTGSTSSTEEGLECPICWESFNIVENVPYVLWCGHTLCQNCVLG 74
           + +T+P+    D S +  G  ++ EE LECPICWESFN+VENVPYVLWCGHT+C+ C+LG
Sbjct: 19  EAATKPRRATLDRSGD--GRKTTKEEKLECPICWESFNVVENVPYVLWCGHTICKYCLLG 78

Query: 75  LQWAI-LKLPAQKIKLPFFVSCPWCNLLSFRWVYRGNLKFPRKNYFILWMVESLNGERAK 134
           LQ AI +K  A   +LPFFV+CPWCN+LS R V  G ++FP KN+++LWMVES+NG R++
Sbjct: 79  LQRAIVIKSSALPFQLPFFVACPWCNILSLRLVCNGTIRFPSKNFYLLWMVESMNGSRSE 138

Query: 135 SSCSVRDDNRLTFSPRVSSLIGCPANNHSPRRAQYTQSRGLLGS-NLDDGRVTGNINVER 194
           +      DN+   S +      C   +++          GLL + +  +G   G     R
Sbjct: 139 AP----SDNKRVASGQRDLRNRCDGVSNTA-----LGDEGLLDNRSWWNGVTRGFFRTGR 198

Query: 195 PQFSLHKSLDYFIHVASKFPLVILFLVIIFCVIPGSVAILVLYLLVSVLLALPSILVLYF 254
              S+ KS+    H+ +KFPLV++FL++    IP S A+L +Y  V+  LA+PS LVLYF
Sbjct: 199 LHDSVRKSMALVAHLLAKFPLVVIFLLMALYAIPVSAAVLGVYFFVTFALAVPSFLVLYF 258

Query: 255 AYPTLDWLLREIAS 267
           A+P+L+WL+REIA+
Sbjct: 259 AFPSLNWLIREIAT 261
[Close]
BLAST of Spo12462.1 vs. TAIR (Arabidopsis)
Match: AT1G21651.1 (zinc ion binding)

HSP 1 Score: 50.1 bits (118), Expect = 2.500e-6
Identity = 42/154 (27.27%), Postives = 64/154 (41.56%), Query Frame = 1 

		  

Query: 43  ECPICWESFNIVENVPYVLWCGHTLCQNCVLGLQWAILKLPAQKIKLPFFVSCPWCNLLS 102
           ECP+C +S++    VP VL CGHT C+ C+  L            K P  + CP C +L 
Sbjct: 5   ECPVCLQSYDGESTVPRVLACGHTACEECLTNL----------PKKFPDTIRCPACTVL- 64

Query: 103 FRWVYRGNLKFPRKNYFILWMVESL---------NGERAKS--SCSVRDDNRLTFSPRVS 162
            ++  +G    P KN  +L +  S+         N E+     + S  DD   T+  R+ 
Sbjct: 65  VKFPPQGPSALP-KNIDLLRLFPSISKLKLEPGRNFEKVVEFVTRSWSDDFYATWKDRIL 124

Query: 163 SLIGCPANNHSPRRAQYTQSRGLLGSNLDDGRVT 186
                         + +  S  L GS  DD +V+
Sbjct: 125 VHDAVSVEIRESESSDFDSSSRLCGSLRDDSKVS 146
[Close]
BLAST of Spo12462.1 vs. TAIR (Arabidopsis)
Match: AT1G21650.3 (Preprotein translocase SecA family protein)

HSP 1 Score: 50.1 bits (118), Expect = 2.500e-6
Identity = 42/154 (27.27%), Postives = 64/154 (41.56%), Query Frame = 1 

		  

Query: 43  ECPICWESFNIVENVPYVLWCGHTLCQNCVLGLQWAILKLPAQKIKLPFFVSCPWCNLLS 102
           ECP+C +S++    VP VL CGHT C+ C+  L            K P  + CP C +L 
Sbjct: 5   ECPVCLQSYDGESTVPRVLACGHTACEECLTNL----------PKKFPDTIRCPACTVL- 64

Query: 103 FRWVYRGNLKFPRKNYFILWMVESL---------NGERAKS--SCSVRDDNRLTFSPRVS 162
            ++  +G    P KN  +L +  S+         N E+     + S  DD   T+  R+ 
Sbjct: 65  VKFPPQGPSALP-KNIDLLRLFPSISKLKLEPGRNFEKVVEFVTRSWSDDFYATWKDRIL 124

Query: 163 SLIGCPANNHSPRRAQYTQSRGLLGSNLDDGRVT 186
                         + +  S  L GS  DD +V+
Sbjct: 125 VHDAVSVEIRESESSDFDSSSRLCGSLRDDSKVS 146
The following BLAST results are available for this feature:
BLAST of Spo12462.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902228425|gb|KNA21093.1|3.0e-150100.hypothetical protein SOVF_0464... [more]
gi|731339237|ref|XP_010680745.1|1.2e-12786.4PREDICTED: uncharacterized pro... [more]
gi|870857429|gb|KMT08989.1|1.2e-12786.4hypothetical protein BVRB_6g13... [more]
gi|502094166|ref|XP_004490155.1|1.3e-8157.9PREDICTED: uncharacterized pro... [more]
gi|661895824|emb|CDP00402.1|3.8e-8158.9unnamed protein product [Coffe... [more]
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BLAST of Spo12462.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RNN5_SPIOL2.1e-150100.Uncharacterized protein OS=Spi... [more]
A0A0J8C9R8_BETVU8.4e-12886.4Uncharacterized protein OS=Bet... [more]
A0A068TWH3_COFCA2.7e-8158.9Uncharacterized protein OS=Cof... [more]
G7JXW5_MEDTR1.7e-8057.3Uncharacterized protein OS=Med... [more]
A0A059AQH8_EUCGR4.7e-7856.3Uncharacterized protein OS=Euc... [more]
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BLAST of Spo12462.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12462.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT1G69330.11.7e-7153.0RING/U-box superfamily protein[more]
AT3G29270.12.5e-7055.7RING/U-box superfamily protein[more]
AT1G74370.18.0e-5345.2RING/U-box superfamily protein[more]
AT1G21651.12.5e-627.2zinc ion binding[more]
AT1G21650.32.5e-627.2Preprotein translocase SecA fa... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 44..99
score: 10
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 35..99
score: 1.9
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 63..72
scor
IPR027370RING-type zinc-finger, LisH dimerisation motifPFAMPF13445zf-RING_UBOXcoord: 44..96
score: 1.
NoneNo IPR availablePANTHERPTHR13139RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEINcoord: 17..266
score: 4.9E
NoneNo IPR availablePANTHERPTHR13139:SF47SUBFAMILY NOT NAMEDcoord: 17..266
score: 4.9E
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 35..100
score: 3.89

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0009107 lipoate biosynthetic process
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006571 tyrosine biosynthetic process
biological_process GO:0000162 tryptophan biosynthetic process
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0030154 cell differentiation
biological_process GO:0033587 shikimate biosynthetic process
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0006546 glycine catabolic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0009695 jasmonic acid biosynthetic process
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0009117 nucleotide metabolic process
biological_process GO:0007165 signal transduction
biological_process GO:0006733 oxidoreduction coenzyme metabolic process
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0009249 protein lipoylation
biological_process GO:0019748 secondary metabolic process
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0006766 vitamin metabolic process
biological_process GO:0009094 L-phenylalanine biosynthetic process
biological_process GO:0009423 chorismate biosynthetic process
biological_process GO:0019521 D-gluconate metabolic process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0008643 carbohydrate transport
biological_process GO:0006950 response to stress
biological_process GO:0006694 steroid biosynthetic process
biological_process GO:0050790 regulation of catalytic activity
biological_process GO:0006857 oligopeptide transport
biological_process GO:0006396 RNA processing
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0006816 calcium ion transport
biological_process GO:0006007 glucose catabolic process
biological_process GO:0007030 Golgi organization
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0009651 response to salt stress
biological_process GO:0055085 transmembrane transport
biological_process GO:0007033 vacuole organization
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008615 pyridoxine biosynthetic process
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0009443 pyridoxal 5'-phosphate salvage
biological_process GO:0016114 terpenoid biosynthetic process
biological_process GO:0000278 mitotic cell cycle
biological_process GO:0009934 regulation of meristem structural organization
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0016310 phosphorylation
biological_process GO:0042742 defense response to bacterium
cellular_component GO:0005759 mitochondrial matrix
cellular_component GO:0000159 protein phosphatase type 2A complex
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0005768 endosome
cellular_component GO:0005737 cytoplasm
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0019773 proteasome core complex, alpha-subunit complex
cellular_component GO:0005634 nucleus
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0000325 plant-type vacuole
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0033179 proton-transporting V-type ATPase, V0 domain
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0008287 protein serine/threonine phosphatase complex
molecular_function GO:0051287 NAD binding
molecular_function GO:0019888 protein phosphatase regulator activity
molecular_function GO:0005488 binding
molecular_function GO:0003856 3-dehydroquinate synthase activity
molecular_function GO:0042802 identical protein binding
molecular_function GO:0005515 protein binding
molecular_function GO:0051996 squalene synthase activity
molecular_function GO:0035673 oligopeptide transmembrane transporter activity
molecular_function GO:0042626 ATPase activity, coupled to transmembrane movement of substances
molecular_function GO:0010181 FMN binding
molecular_function GO:0004733 pyridoxamine-phosphate oxidase activity
molecular_function GO:0004298 threonine-type endopeptidase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0019901 protein kinase binding
molecular_function GO:0004722 protein serine/threonine phosphatase activity
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0004310 farnesyl-diphosphate farnesyltransferase activity
molecular_function GO:0000989 transcription factor activity, transcription factor binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0016992 lipoate synthase activity
molecular_function GO:0050661 NADP binding
molecular_function GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity
molecular_function GO:0004721 phosphoprotein phosphatase activity
molecular_function GO:0015078 proton transmembrane transporter activity
RNA-Seq Expression