Spo12609 (gene) | SpinachBase

Overview


Name	Spo12609
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_02836 : 6286 .. 8869 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGGATGATTAAATGAGTGTGTTCAAGATTTATTAATTATGTTGTAACGTTAGGGAGAGGAATACTTAAGTCAAATCTATTCTAATATTTAATAGCAGGGAAGTTGAAGTGCCACGTGGCCCCTTCCTGGAATTTCAATATTTTATTTTATTTTTAAAAAAAAAAAACAAAAACAACAACTAAAACATACGGAGTAAACATTAGAAGATCTAAAGTCATTGTCTTCTCCAACTTCAACTCCCTCCTTCAACCTTCGCATCTGAGAAATCACTAAAACCAAATTGCATGAATTCACCCATTCAAGTATCAAAGTATATTTTCGATCTCCAAGCTTTTAATTTCAAAACAAACAAAAACCCAACATCATATCTTTTCGGCTACCGTCTCCAAAAAGACACCTTCCTTCGGATTTCGATTTCCTGTCTTTTATCCTCCATTCCTTTCAAAAACTGCTCCCATCTTCTTAAATTCCTGCTCTCATCAAATTCCTCTCCCATTCATTTATTTCTCTTTATAGGATCTCCCATCTTCTTAAATTCCTCAAATTTTCAAATTTCGTCCTCGCTCATACGCGAGTTTGTTACCATTGAAGAACAAGGACTAAATGGTATTGCATGTTCAATTAATTTTTTCCCTTATGTTGTTATGGAATTTGGCCTACTTATTTTGGGCGGATTTTAGTGGGAAAAGATTGTGGTATTGTTTTGATTGTTTAAGATTTTAGATGATTTTACATTAATTTAGGGTATAATTTCGAGAAGAATTTCTTATCCTTTGTAATTCTTGAACTTCTTCACGGTACATGTAATTTTTCAGGATCAATTTACAAAATTAGGTAATTCTTTGTTCTATTGATTGCTTTGGTGTTTGTTAGAAATTTAGGAAAATTAGTTTGTTTTGGGCAGATTTTAATCAGAAAGATTGAGGTTTAATTGCAATCAATTATGAAAATTACCTCTTTGATTGAATTTTATCTTATATTCTACTTTGAAGTATTTGATTTATTGAATGAGTATGAAATTGTTTAAGAGAAAAGATGTATACATTTTGCTGCGTAATGGAGTTTTTAGTAGCATTGTCAGGTGTAGAATGAAGGCACAGATCGTTACAAGGTGACTCCTTTGTTTATGACGACGACACCATTTGATGGTCTGATTGAAATTGAATAAAACGAAATTGAACTTTTTTTTTTTTTGTTTGAGTTAAATTTTAGAAATCATGAAGTTTTTCGGGAAAAAAAGTTACTCCCTTATATTGGAAGTATAAGCTTTTACCTTAGTTTAAGTCAGATCCTTGCTAATTTCTTAGTTTAAGACCTAGGCAACAACAACACCAACCACTCCTTGGTCTAATATTTTGCCGCAAAAAAGACTTAAGTAGTGAAAGTTATGGATTAAGGAAGGGGGGAAGGGAGATGTAACTGATGATGGGAGAGAACCTTGTGGTTCCACTATATAAGTCTGTTCTATATACTCTGTATTTTCTTATGCTATGATTGCTGACAGTAGCAGTAGTTTATATCATGAATATAGAATGTAATTCATGTTTGATTTTTCATTTTGTACTCTTTATTCAGTATGAACCATATCATTCAAATGGGTATTTTCCTCTTTTATATTACGGGGTAATATTAAAGCCCAACTTAATTTAATTATTTAACCTTTTTTTGGTTTGATTTGTGGATGATCTTGAATGGTGGTAACAAATGAATCCAAAAAAGTAACCTATGAATTTTATGAGTGATATTTGTTCCCTTTTTCTAATATTATCTTGTGGAGAAACTAACATCGTTGAAGTTACCATAATATTGTGGGAAAACAATTGTTTAGAGTTTTATAGACGGATAAATACATCTAACATTACTGGGGTATGTTTCTTCTTTACAAGAAATTTATCCTCCGTAGTTCAAACGCCAATTGAGCAAAGTAAGTTTGCTATAATTTCAAGTTTTTTCATAGTACTATGGGCTCGGAAGGGATGTCATTTTCCGGAATATACCAAAAGATAAAAGTGTGCACAAGTCACTTAAAAAGACAATGCTTTTTAATTGATCTTATACAAAACGTAGCACATAATGTTCGTGCATCGCATGGAACATAATTTGAATGAGGTTTTCATGCCTTCTGCATCTCCCTTTTGATAAACTTCAAATGTCTTCAACTTTGTTTAATTATTGTTGTATTGTGCTTACTGTCTAATATAGGATATGGATAAATGTATATACAAGCTCCCTATCATTCTCTAATCAAACTTGATCATTCATATACATATACGTAGTATAATTATTTGTGTAGTTTTAGTGTTCCTCATATTGCCTTTTGATAGGGAAGTACTGCTTCAGAAGAACACCAATCAAGTAAAGAGAAGGCCAATTCATCCCCGAAGCAATAATTCACAAAATCTGTTAAAGTGAAGATTCACTTTACACTAAAAAATTAAGAGTTGCCTAGAAATGTATATTACACCTATTTTACGCCGAACCACTATGTACAACATATGCAAATTTTTAATTCTTGCGTAATTTTGTAAAGCATTTGTTATGAGTATTTTTTTTTTCTTCATACTATTGTTTGAAATTGTTAC

mRNA sequence

ATTGGATGATTAAATGAGTGTGTTCAAGATTTATTAATTATGTTGTAACGTTAGGGAGAGGAATACTTAAGTCAAATCTATTCTAATATTTAATAGCAGGGAAGTTGAAGTGCCACGTGGCCCCTTCCTGGAATTTCAATATTTTATTTTATTTTTAAAAAAAAAAAACAAAAACAACAACTAAAACATACGGAGTAAACATTAGAAGATCTAAAGTCATTGTCTTCTCCAACTTCAACTCCCTCCTTCAACCTTCGCATCTGAGAAATCACTAAAACCAAATTGCATGAATTCACCCATTCAAGTATCAAAGTATATTTTCGATCTCCAAGCTTTTAATTTCAAAACAAACAAAAACCCAACATCATATCTTTTCGGCTACCGTCTCCAAAAAGACACCTTCCTTCGGATTTCGATTTCCTGTCTTTTATCCTCCATTCCTTTCAAAAACTGCTCCCATCTTCTTAAATTCCTGCTCTCATCAAATTCCTCTCCCATTCATTTATTTCTCTTTATAGGATCTCCCATCTTCTTAAATTCCTCAAATTTTCAAATTTCGTCCTCGCTCATACGCGAGTTTGTTACCATTGAAGAACAAGGACTAAATGGGAAGTACTGCTTCAGAAGAACACCAATCAAGTAAAGAGAAGGCCAATTCATCCCCGAAGCAATAATTCACAAAATCTGTTAAAGTGAAGATTCACTTTACACTAAAAAATTAAGAGTTGCCTAGAAATGTATATTACACCTATTTTACGCCGAACCACTATGTACAACATATGCAAATTTTTAATTCTTGCGTAATTTTGTAAAGCATTTGTTATGAGTATTTTTTTTTTCTTCATACTATTGTTTGAAATTGTTAC

Coding sequence (CDS)

ATGAATTCACCCATTCAAGTATCAAAGTATATTTTCGATCTCCAAGCTTTTAATTTCAAAACAAACAAAAACCCAACATCATATCTTTTCGGCTACCGTCTCCAAAAAGACACCTTCCTTCGGATTTCGATTTCCTGTCTTTTATCCTCCATTCCTTTCAAAAACTGCTCCCATCTTCTTAAATTCCTGCTCTCATCAAATTCCTCTCCCATTCATTTATTTCTCTTTATAGGATCTCCCATCTTCTTAAATTCCTCAAATTTTCAAATTTCGTCCTCGCTCATACGCGAGTTTGTTACCATTGAAGAACAAGGACTAAATGGGAAGTACTGCTTCAGAAGAACACCAATCAAGTAA

Protein sequence

MNSPIQVSKYIFDLQAFNFKTNKNPTSYLFGYRLQKDTFLRISISCLLSSIPFKNCSHLLKFLLSSNSSPIHLFLFIGSPIFLNSSNFQISSSLIREFVTIEEQGLNGKYCFRRTPIK

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo12609.1	Spo12609.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo12609.1 vs. NCBI nr
BLAST of Spo12609.1 vs. UniProtKB/TrEMBL
BLAST of Spo12609.1 vs. ExPASy Swiss-Prot
BLAST of Spo12609.1 vs. TAIR (Arabidopsis)

BLAST of Spo12609.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo12609.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo12609.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo12609.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0006464	cellular protein modification process
biological_process	GO:0006768	biotin metabolic process
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0006771	riboflavin metabolic process
biological_process	GO:0010114	response to red light
biological_process	GO:0010218	response to far red light
biological_process	GO:0009637	response to blue light
biological_process	GO:0009657	plastid organization
biological_process	GO:0019760	glucosinolate metabolic process
biological_process	GO:0010206	photosystem II repair
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0006364	rRNA processing
biological_process	GO:0051090	regulation of DNA-binding transcription factor activity
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0045017	glycerolipid biosynthetic process
biological_process	GO:0044262	cellular carbohydrate metabolic process
biological_process	GO:0009627	systemic acquired resistance
biological_process	GO:0006090	pyruvate metabolic process
biological_process	GO:0048573	photoperiodism, flowering
biological_process	GO:0008654	phospholipid biosynthetic process
biological_process	GO:0042318	penicillin biosynthetic process
biological_process	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process	GO:0006650	glycerophospholipid metabolic process
biological_process	GO:0046168	glycerol-3-phosphate catabolic process
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0006750	glutathione biosynthetic process
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0017001	antibiotic catabolic process
biological_process	GO:0048653	anther development
biological_process	GO:0010089	xylem development
biological_process	GO:0048367	shoot system development
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0043067	regulation of programmed cell death
biological_process	GO:0051604	protein maturation
biological_process	GO:0019497	hexachlorocyclohexane metabolic process
biological_process	GO:0009987	cellular process
biological_process	GO:0009553	embryo sac development
biological_process	GO:0030007	cellular potassium ion homeostasis
biological_process	GO:0019761	glucosinolate biosynthetic process
biological_process	GO:0000911	cytokinesis by cell plate formation
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0006457	protein folding
biological_process	GO:0000226	microtubule cytoskeleton organization
biological_process	GO:0009651	response to salt stress
biological_process	GO:0007165	signal transduction
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0043090	amino acid import
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0050983	obsolete deoxyhypusine biosynthetic process from spermidine
biological_process	GO:0008612	peptidyl-lysine modification to peptidyl-hypusine
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0042908	xenobiotic transport
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0006855	drug transmembrane transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0016020	membrane
cellular_component	GO:0009331	glycerol-3-phosphate dehydrogenase complex
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031977	thylakoid lumen
cellular_component	GO:0000325	plant-type vacuole
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005622	intracellular
molecular_function	GO:0008800	beta-lactamase activity
molecular_function	GO:0004416	hydroxyacylglutathione hydrolase activity
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0004367	glycerol-3-phosphate dehydrogenase [NAD+] activity
molecular_function	GO:0005484	SNAP receptor activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008559	xenobiotic transmembrane transporting ATPase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0043621	protein self-association
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0004077	biotin-[acetyl-CoA-carboxylase] ligase activity
molecular_function	GO:0003993	acid phosphatase activity
molecular_function	GO:0008281	sulfonylurea receptor activity
molecular_function	GO:0034038	deoxyhypusine synthase activity
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0004721	phosphoprotein phosphatase activity
molecular_function	GO:0003756	protein disulfide isomerase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo08407	0.78	Barchart \| Table
Spo23745	0.76	Barchart \| Table
Spo24430	0.75	Barchart \| Table
Spo25987	0.75	Barchart \| Table
Spo02665	0.74	Barchart \| Table
Spo15317	0.74	Barchart \| Table
Spo14630	0.74	Barchart \| Table
Spo01628	0.73	Barchart \| Table
Spo10965	0.73	Barchart \| Table
Spo25008	0.73	Barchart \| Table
Spo23332	0.72	Barchart \| Table
Spo02106	0.72	Barchart \| Table
Spo15995	0.72	Barchart \| Table
Spo17726	0.72	Barchart \| Table
Spo00205	0.72	Barchart \| Table
Spo20106	0.72	Barchart \| Table
Spo25985	0.71	Barchart \| Table
Spo25717	0.71	Barchart \| Table
Spo15273	0.71	Barchart \| Table
Spo09232	0.71	Barchart \| Table
Spo19123	0.70	Barchart \| Table
Spo05307	0.70	Barchart \| Table
Spo13981	0.70	Barchart \| Table
Spo04123	0.70	Barchart \| Table
Spo25981	0.70	Barchart \| Table
Spo23382	0.70	Barchart \| Table
Spo01925	0.69	Barchart \| Table
Spo16801	0.69	Barchart \| Table
Spo26610	0.69	Barchart \| Table
Spo24324	0.69	Barchart \| Table
Spo10835	0.69	Barchart \| Table
Spo11688	0.69	Barchart \| Table
Spo21155	0.69	Barchart \| Table
Spo14354	0.69	Barchart \| Table
Spo04486	0.68	Barchart \| Table
Spo15524	0.68	Barchart \| Table
Spo00943	0.68	Barchart \| Table
Spo20930	0.68	Barchart \| Table
Spo12332	0.68	Barchart \| Table
Spo19431	0.68	Barchart \| Table
Spo14723	0.68	Barchart \| Table
Spo20912	0.68	Barchart \| Table
Spo09434	0.68	Barchart \| Table
Spo08591	0.68	Barchart \| Table
Spo24046	0.68	Barchart \| Table
Spo08351	0.68	Barchart \| Table
Spo24736	0.67	Barchart \| Table
Spo00498	0.67	Barchart \| Table
Spo00526	0.67	Barchart \| Table
Spo00677	0.67	Barchart \| Table
Spo01515	0.67	Barchart \| Table
Spo02696	0.67	Barchart \| Table
Spo02979	0.67	Barchart \| Table
Spo03199	0.67	Barchart \| Table
Spo06953	0.67	Barchart \| Table
Spo09554	0.67	Barchart \| Table
Spo15222	0.67	Barchart \| Table
Spo21600	0.67	Barchart \| Table
Spo22004	0.67	Barchart \| Table
Spo22694	0.67	Barchart \| Table
Spo24331	0.67	Barchart \| Table
Spo13783	0.66	Barchart \| Table
Spo01252	0.66	Barchart \| Table
Spo01132	0.66	Barchart \| Table
Spo00743	0.66	Barchart \| Table
Spo13430	0.66	Barchart \| Table
Spo10491	0.66	Barchart \| Table
Spo23415	0.66	Barchart \| Table
Spo23708	0.66	Barchart \| Table
Spo10031	0.66	Barchart \| Table
Spo09798	0.66	Barchart \| Table
Spo27364	0.66	Barchart \| Table
Spo05125	0.66	Barchart \| Table
Spo25196	0.66	Barchart \| Table
Spo19217	0.66	Barchart \| Table
Spo18578	0.66	Barchart \| Table
Spo17578	0.66	Barchart \| Table
Spo21591	0.65	Barchart \| Table
Spo25573	0.65	Barchart \| Table
Spo23853	0.65	Barchart \| Table
Spo04200	0.65	Barchart \| Table
Spo09008	0.65	Barchart \| Table
Spo02749	0.65	Barchart \| Table
Spo08713	0.65	Barchart \| Table
Spo08478	0.65	Barchart \| Table
Spo25983	0.65	Barchart \| Table