Spo12618 (gene)

Overview
NameSpo12618
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr3 : 95741482 .. 95744071 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAGGGATCGTTCTCCATCTACATCGCAATGCTTCAATTGTAATGAAATTGGTCATTATAAACGAAATTGCCCTAAACTAAAGGAAGAGAAGAAGGACGGAAACGTTGCTTCTCCTTTAGGTATGTATGTTATACATTGTAATCTTGCTAATTCTACTTCTTGGGTATTAGGTACTGGTTGTGGCTCACACTTATGTTCCAATTCGCAGGGACTAAGGAGAAGTAGAAAGCTTGATAAAGGCGAGATGGATCTACGTGTGGAAATGGAGCACAGATTGCTGCATTAGCCGTAGGATGTTATTTTATTTCTTTGCCTAGTGGTTTTGTTTTGGAACTAGAAAACTGTTACTATGTTCCTAGTATCACCAGAAACATCATTTCCGTTTCAAGTTTGGATTCTAAAGGTTTTAGTTTTCGATTTAAAGACAATAGTTGTTCTTTTGCTTTGAATGGAATGTTTTATGGTTCAGCACAACAAGAAAATGGTCTATATGTCACTACTACAAAATATGGTATTTCTAGATGCCAACAGCTCAACGCTGCCAATGAAGCGCTGGGGCAAATTGGGAATCCCGTGTTTTGTCGACGCCTAAACTCATCCTTCTTATTTCTCGTCCGAATAACGCGCCGAGAGGTGTAGAAATCAGTCACTTGCCAGTCATGTGTTGCATCATTAGCCAACAAGTTCAATGTTTTGGGAGAAAATAATACCCCACTCCTTCCGTAACAACCAACCCTAGCCGCCCCATTCCCATTTTCTCTCACATCTCTCCTCTCTAGAAACTGAAAAGATCTTATCTTTCTCATCTCAAATTGCCTCTACTTGTAATTCATTAAAGCGAAATGTCACCGACTCAAATTGCAACATAAAATGTTATCTGATTTAGAGAAAAGTCTTCAATGTTGATCTAAACGGCACTGTTATATCTCAAACACAAGGTAACAGTCAATTCACATATCTCTTAATTATGTTACTTCGTTCTGTCTCTTTTCAATTTCGGAATTTTGATGGATTTTCTGGGTTATTATTGCTTATTGTGCTTTTTGGGTTGTATAGGAATTGATTTGAGTGTTTCTGAATAATTTTGAGGATTTGACGGCACTTCCTTTGGTTTAATTGATATTGGGATTGAATGCAGGGATCTACTTTTTATAATAAGTTTATTTGTTGGGTGAATTTGCTGGTATTGACTTTTCTACTAAGAATTTACTTAGCTTGGATGCAGTTCATGACCTTAATTGTTTATATTTTATTTGCAATGAAGTTTCTTTAATTTTATATTTCAACTTTGAGCTTCAACTTTCTTGCACATAATATGACTTTCGTCTGCAAATTACACATACAAGTTCTTTTACAATCTTTTATCATCTGCAAATTTAATTAAAAATAGTTTGTTTCCTTCTGACTGTTGCCGATCAGCTAAAAGGAAATATAAAAGTGGATTGTTCAATTTAAAGAGAACTCCAAGCAATAAAATAAAATATGTTTACAGGGATTTTTTTTAATAAGACGCCCATTTTTATTACTTTTGTTTCTTGCCTTAAGCATGTTAATTGTAGTGAGGTAGTTTTTAGGATTTATGCAGCCAGCTTCTATTTTTTAGGGGTTTATGCAGCTAGCTTCTATTCAAAATGGACATTGATACATGCTTCCAATGGCTATGGAGTACGGACGGAGGTAGAATATCGAGTTCTGTTCTGTTCCAGATTGATGTCAATTCAGCTCTAATCTATGGCTTGAGGAAATTCAAGGTTGTATGTGCTCATTCATAAACCTTTTGTTAATTTGTTTCCTTTTTTTGTTATATAATAGTAACTCATGAGCTGGTGTTATTGACCTTCCTCCTGGTGGACTCTCAATAGAGATTCATTGCTCCTTTAATCAGTCTAGATCGATTAGATAATTAGGTTTGATAGTTTTTTGTTTTTACATTTTCACAGTTCTGTTTAAAATTTATCTCTTTCTAGTGTTATTATTTCTCGTATTTTGTTCTACTTTTCTCTTGAAATTAAATTCCGACAGCTAGTGTATCAAGGCCTAACACTAGGGATCTTGTCACTCGTACCATCAGAATAGCAAATTCTGCTCCAATGATAACCCTCAAGATTCTTATCAATATTGCTTTCCTTGGACAATTTGTTCAACTTGTAGGCCAATTTCCTATGACTAATGATTTTGATTTCTGACTCATACTTATTTCATTTTTTTTTTCTTTGAAGATCGTCCAACGTGATAAGGAGCAACACGAGAATGAAGGCCATGACACTTGAGCTTATAAGCTTCTACCACCACTAGATCCTAGTTTTTTCTAGGCTTTAGTTCTTCGGTTTAGTAGATACAATTTGTACTTTTGATTATATTTTGGACTATTTAGTTAGTAACATTTATGTACTATATGAATATGGTTAGTAACATTATCATGTACTATCGATATATTATGGTTAATTAGTACCATTACCTTGTACAATTGATATATTATGGTTAATTAGTACCATTACCATGTACTATAGGTTTTAACGTACTACATACTTCTACATTTTTACATGTTAATTTTAATGTTACATTGATCGAAGAGCTATTATTCA

mRNA sequence

ATGAAGAGGGATCGTTCTCCATCTACATCGCAATGCTTCAATTGTAATGAAATTGGTCATTATAAACGAAATTGCCCTAAACTAAAGGAAGAGAAGAAGGACGGAAACGTTGCTTCTCCTTTAGCTCTAATCTATGGCTTGAGGAAATTCAAGATCGTCCAACGTGATAAGGAGCAACACGAGAATGAAGGCCATGACACTTGAGCTTATAAGCTTCTACCACCACTAGATCCTAGTTTTTTCTAGGCTTTAGTTCTTCGGTTTAGTAGATACAATTTGTACTTTTGATTATATTTTGGACTATTTAGTTAGTAACATTTATGTACTATATGAATATGGTTAGTAACATTATCATGTACTATCGATATATTATGGTTAATTAGTACCATTACCTTGTACAATTGATATATTATGGTTAATTAGTACCATTACCATGTACTATAGGTTTTAACGTACTACATACTTCTACATTTTTACATGTTAATTTTAATGTTACATTGATCGAAGAGCTATTATTCA

Coding sequence (CDS)

ATGAAGAGGGATCGTTCTCCATCTACATCGCAATGCTTCAATTGTAATGAAATTGGTCATTATAAACGAAATTGCCCTAAACTAAAGGAAGAGAAGAAGGACGGAAACGTTGCTTCTCCTTTAGCTCTAATCTATGGCTTGAGGAAATTCAAGATCGTCCAACGTGATAAGGAGCAACACGAGAATGAAGGCCATGACACTTGA

Protein sequence

MKRDRSPSTSQCFNCNEIGHYKRNCPKLKEEKKDGNVASPLALIYGLRKFKIVQRDKEQHENEGHDT
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo12618.1Spo12618.1mRNA


Homology
[Close]
BLAST of Spo12618.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QM23_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_163770 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.800e-6
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 1 

		  

Query: 42 ALIYGLRKFKIVQRDKEQHENEGHDT 68
          ALIYGLRKFKI+QRDKEQHENEGHDT
Sbjct: 31 ALIYGLRKFKIIQRDKEQHENEGHDT 56
The following BLAST results are available for this feature:
BLAST of Spo12618.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12618.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9QM23_SPIOL7.8e-696.1Uncharacterized protein OS=Spi... [more]
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BLAST of Spo12618.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12618.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 11..33
score: 2.
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 11..27
score: 1.
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 11..27
score: 1.
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 12..27
score: 10
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 3..33
score: 1.43

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0006865 amino acid transport
biological_process GO:0016998 cell wall macromolecule catabolic process
biological_process GO:0007020 microtubule nucleation
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006437 tyrosyl-tRNA aminoacylation
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0006571 tyrosine biosynthetic process
biological_process GO:0000162 tryptophan biosynthetic process
biological_process GO:0009846 pollen germination
biological_process GO:0009860 pollen tube growth
biological_process GO:0006486 protein glycosylation
biological_process GO:0097503 sialylation
biological_process GO:0009094 L-phenylalanine biosynthetic process
biological_process GO:0006487 protein N-linked glycosylation
biological_process GO:0055085 transmembrane transport
biological_process GO:0006783 heme biosynthetic process
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0044237 cellular metabolic process
biological_process GO:0006281 DNA repair
biological_process GO:0006432 phenylalanyl-tRNA aminoacylation
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0006855 drug transmembrane transport
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005622 intracellular
cellular_component GO:0009328 phenylalanine-tRNA ligase complex
cellular_component GO:0016020 membrane
cellular_component GO:0005768 endosome
cellular_component GO:0005802 trans-Golgi network
molecular_function GO:0004831 tyrosine-tRNA ligase activity
molecular_function GO:0004826 phenylalanine-tRNA ligase activity
molecular_function GO:0000049 tRNA binding
molecular_function GO:0015293 symporter activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008373 sialyltransferase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0015238 drug transmembrane transporter activity
molecular_function GO:0015297 antiporter activity
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0020037 heme binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008422 beta-glucosidase activity
RNA-Seq Expression