Spo12681 (gene)

Overview
NameSpo12681
Typegene
OrganismSpinacia oleracea (Spinach)
Description60S ribosomal protein L13
LocationSpoScf_17356 : 330 .. 1192 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTGCTGGTATCCCAAAGAAGCTTGCTCCCACTATTGGAATTGCAGTTGACCATCGACGCAGGAATCGCTCCCTAGAAGGTCTGCAAACTAATGTGCAGAGGCTTAAGACCTACAAGGCTAAACTTGTTGTCTTCCCAAGGCACGCCAGGAAGTTCAAGGTAAATTTAAAAATTTCTACCTATCTTATACCATCTAGTCTCCATTTAGTAGGGTGTGAAACATTTTTATTGAAATCGATTTTTCCCTCTTCAACCATTTTTCCTTTTTTGGTTTTGACAAGCTATGAAAAATAATTTTCCATAACTCCCTCAAAGGTTGAAAAACTTTCCATTTGAAAGGGGGTGAAACCATTGTTCCTCCTTACCTTCTCTCCCTTCTTCCCCTCACCATCTTCTCCCATTTTCTTTTAAAGAACCGAAAAAGGTAAACTAGTCTTGAAATTCTCTTTCCCTTGGAAAATCTACCTTTCTTTCTTACCTCCCTCTCCTTTCTTCCCTCCAATTGTCACCATCTTCTGCCATTTTCTTTTAAAGAACCAAACATTTTGCACTGAAAACATTCACGCCAAGCCAAACAGAGCCCTAATGTTTTTCAGTTCGGTAAATCCGCATCTCATTTGTGGAACTTGATTGTTACACAGGCTGGTGATTCAACCCCAGAGGAACTCGCAAATGCTACACAGGTCCAAGGTGAGTTCTTGCCAATTGAGAATGTCAAGGTACCGATGGATATTGTGAGCGTTACAGCCGACATGAAGGCTGTCAATGCCTATGCCAAGCTTCGTCTTGAGAGGACAAACAAACGCCACCAAGGTATTAGACTGAAGAGGGCTGCCGAGGCCGAGAAGGAAGAGAAGAAGTAA

mRNA sequence

GGTGCTGGTATCCCAAAGAAGCTTGCTCCCACTATTGGAATTGCAGTTGACCATCGACGCAGGAATCGCTCCCTAGAAGGTCTGCAAACTAATGTGCAGAGGCTTAAGACCTACAAGGCTAAACTTGTTGTCTTCCCAAGGCACGCCAGGAAGTTCAAGGCTGGTGATTCAACCCCAGAGGAACTCGCAAATGCTACACAGGTCCAAGGTGAGTTCTTGCCAATTGAGAATGTCAAGGTACCGATGGATATTGTGAGCGTTACAGCCGACATGAAGGCTGTCAATGCCTATGCCAAGCTTCGTCTTGAGAGGACAAACAAACGCCACCAAGGTATTAGACTGAAGAGGGCTGCCGAGGCCGAGAAGGAAGAGAAGAAGTAA

Coding sequence (CDS)

GGTGCTGGTATCCCAAAGAAGCTTGCTCCCACTATTGGAATTGCAGTTGACCATCGACGCAGGAATCGCTCCCTAGAAGGTCTGCAAACTAATGTGCAGAGGCTTAAGACCTACAAGGCTAAACTTGTTGTCTTCCCAAGGCACGCCAGGAAGTTCAAGGCTGGTGATTCAACCCCAGAGGAACTCGCAAATGCTACACAGGTCCAAGGTGAGTTCTTGCCAATTGAGAATGTCAAGGTACCGATGGATATTGTGAGCGTTACAGCCGACATGAAGGCTGTCAATGCCTATGCCAAGCTTCGTCTTGAGAGGACAAACAAACGCCACCAAGGTATTAGACTGAAGAGGGCTGCCGAGGCCGAGAAGGAAGAGAAGAAGTAA

Protein sequence

GAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEELANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAEKEEKK
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo12681.1Spo12681.1mRNA


Homology
[Close]
BLAST of Spo12681.1 vs. NCBI nr
Match: gi|902231534|gb|KNA22308.1| (hypothetical protein SOVF_035480 [Spinacia oleracea])

HSP 1 Score: 240.4 bits (612), Expect = 1.800e-60
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 

		  

Query: 1   GAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPE 60
           GAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPE
Sbjct: 82  GAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPE 141

Query: 61  ELANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEA 120
           ELANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEA
Sbjct: 142 ELANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEA 201

Query: 121 EKEEKK 127
           EKEEKK
Sbjct: 202 EKEEKK 207
[Close]
BLAST of Spo12681.1 vs. NCBI nr
Match: gi|731332983|ref|XP_010677493.1| (PREDICTED: 60S ribosomal protein L13-1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 216.1 bits (549), Expect = 3.600e-53
Identity = 110/125 (88.00%), Postives = 119/125 (95.20%), Query Frame = 1 

		  

Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGIAVDHRRRN SLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE
Sbjct: 83  AGIPKKLAPTIGIAVDHRRRNSSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 142

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQGEFLPI++ K P++++ VT DMK+ NAY+KLRLERTNKRHQGIRLKRAAEAE
Sbjct: 143 LANATQVQGEFLPIKSEKAPVEVIKVTEDMKSFNAYSKLRLERTNKRHQGIRLKRAAEAE 202

Query: 122 KEEKK 127
           KE+KK
Sbjct: 203 KEDKK 207
[Close]
BLAST of Spo12681.1 vs. NCBI nr
Match: gi|567138975|ref|XP_006394649.1| (hypothetical protein EUTSA_v10004920mg [Eutrema salsugineum])

HSP 1 Score: 195.7 bits (496), Expect = 5.000e-47
Identity = 100/125 (80.00%), Postives = 112/125 (89.60%), Query Frame = 1 

		  

Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           A IPKKLAPTIGI+VDHRR+NRSLEGLQ+NVQRLKTYKAKLVVFPR +RK KAGDSTPEE
Sbjct: 82  ACIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRKVKAGDSTPEE 141

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQG+++PI   K PMD+V VTADMKA  AY K+RLERTN+RH G+R KRAA+AE
Sbjct: 142 LANATQVQGDYMPIAREKAPMDLVKVTADMKAFKAYDKIRLERTNQRHAGVRAKRAADAE 201

Query: 122 KEEKK 127
           KEEKK
Sbjct: 202 KEEKK 206
[Close]
BLAST of Spo12681.1 vs. NCBI nr
Match: gi|727444088|ref|XP_010503548.1| (PREDICTED: 60S ribosomal protein L13-1 [Camelina sativa])

HSP 1 Score: 194.1 bits (492), Expect = 1.400e-46
Identity = 100/125 (80.00%), Postives = 111/125 (88.80%), Query Frame = 1 

		  

Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGI+VDHRR+NRSLEGLQTNVQRLKTYKAKLV+FPR ARK KAGDSTPEE
Sbjct: 82  AGIPKKLAPTIGISVDHRRKNRSLEGLQTNVQRLKTYKAKLVIFPRRARKVKAGDSTPEE 141

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQG+++PI   K  M++V +T+DMK+  AY KLRLERTNKRH G RLKRA EAE
Sbjct: 142 LANATQVQGDYMPIVREKPTMELVKLTSDMKSFKAYDKLRLERTNKRHAGARLKRAQEAE 201

Query: 122 KEEKK 127
           KEEKK
Sbjct: 202 KEEKK 206
[Close]
BLAST of Spo12681.1 vs. NCBI nr
Match: gi|593790206|ref|XP_007158142.1| (hypothetical protein PHAVU_002G127900g [Phaseolus vulgaris])

HSP 1 Score: 193.4 bits (490), Expect = 2.500e-46
Identity = 100/125 (80.00%), Postives = 110/125 (88.00%), Query Frame = 1 

		  

Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGI+VDHRRRNRSLE +Q+NVQRLKTYKAKLVVFPR ARK KAGDSTPEE
Sbjct: 83  AGIPKKLAPTIGISVDHRRRNRSLESMQSNVQRLKTYKAKLVVFPRRARKVKAGDSTPEE 142

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQG +LPI   K P+++V +T DMKA  AY KLRLERTNKRH G RLK+AAEAE
Sbjct: 143 LANATQVQGSYLPIAREKAPVELVKITDDMKAFKAYYKLRLERTNKRHFGARLKKAAEAE 202

Query: 122 KEEKK 127
           KE+KK
Sbjct: 203 KEDKK 207
[Close]
BLAST of Spo12681.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RS61_SPIOL (60S ribosomal protein L13 OS=Spinacia oleracea GN=SOVF_035480 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.200e-60
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 

		  

Query: 1   GAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPE 60
           GAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPE
Sbjct: 82  GAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPE 141

Query: 61  ELANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEA 120
           ELANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEA
Sbjct: 142 ELANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEA 201

Query: 121 EKEEKK 127
           EKEEKK
Sbjct: 202 EKEEKK 207
[Close]
BLAST of Spo12681.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F6B0_BETVU (60S ribosomal protein L13 OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g108050 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.500e-53
Identity = 110/125 (88.00%), Postives = 119/125 (95.20%), Query Frame = 1 

		  

Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGIAVDHRRRN SLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE
Sbjct: 83  AGIPKKLAPTIGIAVDHRRRNSSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 142

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQGEFLPI++ K P++++ VT DMK+ NAY+KLRLERTNKRHQGIRLKRAAEAE
Sbjct: 143 LANATQVQGEFLPIKSEKAPVEVIKVTEDMKSFNAYSKLRLERTNKRHQGIRLKRAAEAE 202

Query: 122 KEEKK 127
           KE+KK
Sbjct: 203 KEDKK 207
[Close]
BLAST of Spo12681.1 vs. UniProtKB/TrEMBL
Match: V4MKI2_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10004920mg PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 3.500e-47
Identity = 100/125 (80.00%), Postives = 112/125 (89.60%), Query Frame = 1 

		  

Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           A IPKKLAPTIGI+VDHRR+NRSLEGLQ+NVQRLKTYKAKLVVFPR +RK KAGDSTPEE
Sbjct: 82  ACIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRKVKAGDSTPEE 141

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQG+++PI   K PMD+V VTADMKA  AY K+RLERTN+RH G+R KRAA+AE
Sbjct: 142 LANATQVQGDYMPIAREKAPMDLVKVTADMKAFKAYDKIRLERTNQRHAGVRAKRAADAE 201

Query: 122 KEEKK 127
           KEEKK
Sbjct: 202 KEEKK 206
[Close]
BLAST of Spo12681.1 vs. UniProtKB/TrEMBL
Match: V7CMM3_PHAVU (60S ribosomal protein L13 OS=Phaseolus vulgaris GN=PHAVU_002G127900g PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.700e-46
Identity = 100/125 (80.00%), Postives = 110/125 (88.00%), Query Frame = 1 

		  

Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGI+VDHRRRNRSLE +Q+NVQRLKTYKAKLVVFPR ARK KAGDSTPEE
Sbjct: 83  AGIPKKLAPTIGISVDHRRRNRSLESMQSNVQRLKTYKAKLVVFPRRARKVKAGDSTPEE 142

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQG +LPI   K P+++V +T DMKA  AY KLRLERTNKRH G RLK+AAEAE
Sbjct: 143 LANATQVQGSYLPIAREKAPVELVKITDDMKAFKAYYKLRLERTNKRHFGARLKKAAEAE 202

Query: 122 KEEKK 127
           KE+KK
Sbjct: 203 KEDKK 207
[Close]
BLAST of Spo12681.1 vs. UniProtKB/TrEMBL
Match: D7M2E3_ARALL (60S ribosomal protein L13 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_489251 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.900e-46
Identity = 99/125 (79.20%), Postives = 111/125 (88.80%), Query Frame = 1 

		  

Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGI+VDHRR+NRSLEGLQ+NVQRLKTYKAKLVVFPR +RK KAGDSTPEE
Sbjct: 82  AGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRKVKAGDSTPEE 141

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQG+++PI + K  M++V +TADMKA  AY K+RLERTN RH G R KRAAEAE
Sbjct: 142 LANATQVQGDYMPIASEKAAMELVKLTADMKAFKAYDKIRLERTNARHAGARAKRAAEAE 201

Query: 122 KEEKK 127
           KEEKK
Sbjct: 202 KEEKK 206
[Close]
BLAST of Spo12681.1 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.400e-48
Identity = 98/125 (78.40%), Postives = 112/125 (89.60%), Query Frame = 1 

		  

Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGI+VDHRR+NRSLEGLQ+NVQRLKTYKAKLVVFPR +R+ KAGDSTPEE
Sbjct: 82  AGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEE 141

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQG+++PI +VK  M++V +TAD+KA  AY K+RLERTN RH G R KRAAEAE
Sbjct: 142 LANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTNARHAGARAKRAAEAE 201

Query: 122 KEEKK 127
           KEEKK
Sbjct: 202 KEEKK 206
[Close]
BLAST of Spo12681.1 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.000e-47
Identity = 98/125 (78.40%), Postives = 110/125 (88.00%), Query Frame = 1 

		  

Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGIAVDHRR+NRSLEGLQTNVQRLKTYK KLV+FPR ARK KAGDSTPEE
Sbjct: 82  AGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEE 141

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQG++LPI   K  M++V +T++MK+  A+ K+RLERTNKRH G R KRAAEAE
Sbjct: 142 LANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGARAKRAAEAE 201

Query: 122 KEEKK 127
           KEEKK
Sbjct: 202 KEEKK 206
[Close]
BLAST of Spo12681.1 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 2.900e-47
Identity = 96/125 (76.80%), Postives = 112/125 (89.60%), Query Frame = 1 

		  

Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGI++DHRR+NRSLEGLQ+NVQRLKTYKAKLV+FPR ARK KAGDST EE
Sbjct: 82  AGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEE 141

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQG+++PI   K  M++V +T++MK+VNAY K+RLERTNKRH G R KRAA+AE
Sbjct: 142 LANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKIRLERTNKRHAGARAKRAADAE 201

Query: 122 KEEKK 127
           KEEKK
Sbjct: 202 KEEKK 206
[Close]
BLAST of Spo12681.1 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 7.200e-46
Identity = 95/125 (76.00%), Postives = 109/125 (87.20%), Query Frame = 1 

		  

Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGIAVDHRR+NRSLEGLQ+NVQRLKTYKAKLV+FPR ARK KAGDST EE
Sbjct: 82  AGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEE 141

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQG+++PI   K   ++V +T +MK+V A+ K+RLERTNKRH G R KRAA+AE
Sbjct: 142 LANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKIRLERTNKRHAGARAKRAADAE 201

Query: 122 KEEKK 127
           KEEKK
Sbjct: 202 KEEKK 206
[Close]
BLAST of Spo12681.1 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.400e-41
Identity = 89/125 (71.20%), Postives = 101/125 (80.80%), Query Frame = 1 

		  

Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGI+VDH R+NRSLEG QTNVQRLKTYKAKLV+FPR AR  K GDS  +E
Sbjct: 82  AGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQE 141

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQ + +PI      M++V +T+DMK  NAY K+RLE  NKRH G+R KRAAEAE
Sbjct: 142 LANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVRAKRAAEAE 201

Query: 122 KEEKK 127
           KEEKK
Sbjct: 202 KEEKK 206
[Close]
BLAST of Spo12681.1 vs. TAIR (Arabidopsis)
Match: AT5G23900.1 (Ribosomal protein L13e family protein)

HSP 1 Score: 192.2 bits (487), Expect = 1.900e-49
Identity = 98/125 (78.40%), Postives = 112/125 (89.60%), Query Frame = 1 

		  

Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGI+VDHRR+NRSLEGLQ+NVQRLKTYKAKLVVFPR +R+ KAGDSTPEE
Sbjct: 82  AGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEE 141

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQG+++PI +VK  M++V +TAD+KA  AY K+RLERTN RH G R KRAAEAE
Sbjct: 142 LANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTNARHAGARAKRAAEAE 201

Query: 122 KEEKK 127
           KEEKK
Sbjct: 202 KEEKK 206
[Close]
BLAST of Spo12681.1 vs. TAIR (Arabidopsis)
Match: AT3G49010.1 (breast basic conserved 1)

HSP 1 Score: 190.7 bits (483), Expect = 5.600e-49
Identity = 98/125 (78.40%), Postives = 110/125 (88.00%), Query Frame = 1 

		  

Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGIAVDHRR+NRSLEGLQTNVQRLKTYK KLV+FPR ARK KAGDSTPEE
Sbjct: 82  AGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEE 141

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQG++LPI   K  M++V +T++MK+  A+ K+RLERTNKRH G R KRAAEAE
Sbjct: 142 LANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGARAKRAAEAE 201

Query: 122 KEEKK 127
           KEEKK
Sbjct: 202 KEEKK 206
[Close]
BLAST of Spo12681.1 vs. TAIR (Arabidopsis)
Match: AT3G48960.1 (Ribosomal protein L13e family protein)

HSP 1 Score: 169.5 bits (428), Expect = 1.300e-42
Identity = 89/125 (71.20%), Postives = 101/125 (80.80%), Query Frame = 1 

		  

Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGI+VDH R+NRSLEG QTNVQRLKTYKAKLV+FPR AR  K GDS  +E
Sbjct: 82  AGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQE 141

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQ + +PI      M++V +T+DMK  NAY K+RLE  NKRH G+R KRAAEAE
Sbjct: 142 LANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVRAKRAAEAE 201

Query: 122 KEEKK 127
           KEEKK
Sbjct: 202 KEEKK 206
The following BLAST results are available for this feature:
BLAST of Spo12681.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902231534|gb|KNA22308.1|1.8e-60100.hypothetical protein SOVF_0354... [more]
gi|731332983|ref|XP_010677493.1|3.6e-5388.0PREDICTED: 60S ribosomal prote... [more]
gi|567138975|ref|XP_006394649.1|5.0e-4780.0hypothetical protein EUTSA_v10... [more]
gi|727444088|ref|XP_010503548.1|1.4e-4680.0PREDICTED: 60S ribosomal prote... [more]
gi|593790206|ref|XP_007158142.1|2.5e-4680.0hypothetical protein PHAVU_002... [more]
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BLAST of Spo12681.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RS61_SPIOL1.2e-60100.60S ribosomal protein L13 OS=S... [more]
A0A0J8F6B0_BETVU2.5e-5388.060S ribosomal protein L13 OS=B... [more]
V4MKI2_EUTSA3.5e-4780.0Uncharacterized protein OS=Eut... [more]
V7CMM3_PHAVU1.7e-4680.060S ribosomal protein L13 OS=P... [more]
D7M2E3_ARALL2.9e-4679.260S ribosomal protein L13 OS=A... [more]
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BLAST of Spo12681.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL133_ARATH3.4e-4878.460S ribosomal protein L13-3 OS... [more]
RL131_ARATH1.0e-4778.460S ribosomal protein L13-1 OS... [more]
RL132_BRANA2.9e-4776.860S ribosomal protein L13-2 OS... [more]
RL131_BRANA7.2e-4676.060S ribosomal protein L13-1 OS... [more]
RL132_ARATH2.4e-4171.2Putative 60S ribosomal protein... [more]
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BLAST of Spo12681.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT5G23900.11.9e-4978.4Ribosomal protein L13e family ... [more]
AT3G49010.15.6e-4978.4breast basic conserved 1[more]
AT3G48960.11.3e-4271.2Ribosomal protein L13e family ... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001380Ribosomal protein L13ePANTHERPTHR1172260S RIBOSOMAL PROTEIN L13coord: 2..126
score: 8.6
IPR001380Ribosomal protein L13ePFAMPF01294Ribosomal_L13ecoord: 2..104
score: 2.2
NoneNo IPR availablePANTHERPTHR11722:SF1SUBFAMILY NOT NAMEDcoord: 2..126
score: 8.6

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0007017 microtubule-based process
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0006421 asparaginyl-tRNA aminoacylation
biological_process GO:0006522 alanine metabolic process
biological_process GO:0009416 response to light stimulus
biological_process GO:0006782 protoporphyrinogen IX biosynthetic process
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0030154 cell differentiation
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0051258 protein polymerization
biological_process GO:0006096 glycolytic process
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0006007 glucose catabolic process
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006414 translational elongation
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0042742 defense response to bacterium
biological_process GO:0016070 RNA metabolic process
biological_process GO:0006412 translation
biological_process GO:0030001 metal ion transport
biological_process GO:0006457 protein folding
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0008152 metabolic process
biological_process GO:0009790 embryo development
biological_process GO:0051301 cell division
biological_process GO:0042545 cell wall modification
biological_process GO:0034968 histone lysine methylation
biological_process GO:0006164 purine nucleotide biosynthetic process
biological_process GO:0010498 proteasomal protein catabolic process
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0006364 rRNA processing
biological_process GO:0006261 DNA-dependent DNA replication
biological_process GO:0009263 deoxyribonucleotide biosynthetic process
biological_process GO:0009202 deoxyribonucleoside triphosphate biosynthetic process
biological_process GO:0009186 deoxyribonucleoside diphosphate metabolic process
biological_process GO:0006833 water transport
biological_process GO:0016126 sterol biosynthetic process
biological_process GO:0010162 seed dormancy process
biological_process GO:0048767 root hair elongation
biological_process GO:0009266 response to temperature stimulus
biological_process GO:0046686 response to cadmium ion
biological_process GO:0000271 polysaccharide biosynthetic process
biological_process GO:0009909 regulation of flower development
biological_process GO:0009825 multidimensional cell growth
biological_process GO:0007018 microtubule-based movement
biological_process GO:0006972 hyperosmotic response
biological_process GO:0007030 Golgi organization
biological_process GO:0009740 gibberellic acid mediated signaling pathway
biological_process GO:0007010 cytoskeleton organization
biological_process GO:0071555 cell wall organization
biological_process GO:0009932 cell tip growth
biological_process GO:0016132 brassinosteroid biosynthetic process
biological_process GO:0043481 anthocyanin accumulation in tissues in response to UV light
biological_process GO:0006084 acetyl-CoA metabolic process
biological_process GO:0042176 regulation of protein catabolic process
biological_process GO:0050790 regulation of catalytic activity
biological_process GO:0009088 threonine biosynthetic process
biological_process GO:0009409 response to cold
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008356 asymmetric cell division
biological_process GO:0006165 nucleoside diphosphate phosphorylation
biological_process GO:0006612 protein targeting to membrane
biological_process GO:0006241 CTP biosynthetic process
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0043090 amino acid import
biological_process GO:0015696 ammonium transport
biological_process GO:0010015 root morphogenesis
biological_process GO:0015802 basic amino acid transport
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0008361 regulation of cell size
biological_process GO:0007389 pattern specification process
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0009926 auxin polar transport
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0006891 intra-Golgi vesicle-mediated transport
biological_process GO:0006869 lipid transport
biological_process GO:0001510 RNA methylation
biological_process GO:0016567 protein ubiquitination
biological_process GO:0010351 lithium ion transport
biological_process GO:0061025 membrane fusion
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0043069 negative regulation of programmed cell death
biological_process GO:0006862 nucleotide transport
biological_process GO:0006606 protein import into nucleus
biological_process GO:0016558 protein import into peroxisome matrix
biological_process GO:0010363 regulation of plant-type hypersensitive response
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006183 GTP biosynthetic process
biological_process GO:0043269 regulation of ion transport
biological_process GO:0006544 glycine metabolic process
biological_process GO:0009097 isoleucine biosynthetic process
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0009089 lysine biosynthetic process via diaminopimelate
biological_process GO:0006228 UTP biosynthetic process
biological_process GO:0009585 red, far-red light phototransduction
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005635 nuclear envelope
cellular_component GO:0005829 cytosol
cellular_component GO:0000502 proteasome complex
cellular_component GO:0005622 intracellular
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005773 vacuole
cellular_component GO:0005874 microtubule
cellular_component GO:0044424 intracellular part
cellular_component GO:0009507 chloroplast
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005853 eukaryotic translation elongation factor 1 complex
cellular_component GO:0048046 apoplast
cellular_component GO:0005730 nucleolus
cellular_component GO:0016020 membrane
cellular_component GO:0005618 cell wall
cellular_component GO:0005971 ribonucleoside-diphosphate reductase complex
cellular_component GO:0005737 cytoplasm
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005525 GTP binding
molecular_function GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0008234 cysteine-type peptidase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0030234 enzyme regulator activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004073 aspartate-semialdehyde dehydrogenase activity
molecular_function GO:0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity
molecular_function GO:0051287 NAD binding
molecular_function GO:0050661 NADP binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0004550 nucleoside diphosphate kinase activity
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0005488 binding
molecular_function GO:0030145 manganese ion binding
molecular_function GO:0004619 phosphoglycerate mutase activity
molecular_function GO:0008097 5S rRNA binding
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function GO:0005200 structural constituent of cytoskeleton
molecular_function GO:0042286 glutamate-1-semialdehyde 2,1-aminomutase activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0008483 transaminase activity
molecular_function GO:0004816 asparagine-tRNA ligase activity
molecular_function GO:0008422 beta-glucosidase activity
molecular_function GO:0008536 Ran GTPase binding
molecular_function GO:0008565 protein transporter activity
molecular_function GO:0016817 hydrolase activity, acting on acid anhydrides
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo174950.87Barchart | Table
Spo121910.86Barchart | Table
Spo069040.84Barchart | Table
Spo148750.83Barchart | Table
Spo132790.82Barchart | Table
Spo230010.82Barchart | Table
Spo192360.81Barchart | Table
Spo253060.81Barchart | Table
Spo019990.81Barchart | Table
Spo234980.81Barchart | Table
Spo232200.81Barchart | Table
Spo070160.80Barchart | Table
Spo230380.80Barchart | Table
Spo223940.80Barchart | Table
Spo078210.79Barchart | Table
Spo052440.79Barchart | Table
Spo037010.79Barchart | Table
Spo219220.79Barchart | Table
Spo029280.79Barchart | Table
Spo172710.79Barchart | Table
Spo056320.79Barchart | Table
Spo186470.78Barchart | Table
Spo043810.78Barchart | Table
Spo070170.78Barchart | Table
Spo180940.78Barchart | Table
Spo076680.77Barchart | Table
Spo223100.77Barchart | Table
Spo023970.77Barchart | Table
Spo236220.76Barchart | Table
Spo204600.76Barchart | Table
Spo088160.76Barchart | Table
Spo068370.76Barchart | Table
Spo039790.75Barchart | Table
Spo176620.75Barchart | Table
Spo271540.75Barchart | Table
Spo046670.75Barchart | Table
Spo123040.75Barchart | Table
Spo123110.75Barchart | Table
Spo032000.75Barchart | Table
Spo086910.74Barchart | Table
Spo160990.74Barchart | Table
Spo157510.74Barchart | Table
Spo132880.74Barchart | Table
Spo256350.74Barchart | Table
Spo211860.74Barchart | Table
Spo209970.74Barchart | Table
Spo231930.74Barchart | Table
Spo207890.74Barchart | Table
Spo020110.74Barchart | Table
Spo089610.73Barchart | Table
Spo194400.73Barchart | Table
Spo194130.73Barchart | Table
Spo151320.73Barchart | Table
Spo119430.73Barchart | Table
Spo134810.72Barchart | Table
Spo136210.72Barchart | Table
Spo143800.72Barchart | Table
Spo074020.72Barchart | Table
Spo059090.72Barchart | Table
Spo120480.72Barchart | Table
Spo189010.72Barchart | Table
Spo022180.72Barchart | Table
Spo121930.72Barchart | Table
Spo272230.71Barchart | Table
Spo050640.71Barchart | Table
Spo101470.71Barchart | Table
Spo127590.71Barchart | Table
Spo192540.71Barchart | Table
Spo205190.71Barchart | Table
Spo206470.71Barchart | Table
Spo225050.70Barchart | Table
Spo185050.70Barchart | Table
Spo159610.70Barchart | Table
Spo160330.70Barchart | Table
Spo125160.70Barchart | Table
Spo028380.70Barchart | Table
Spo135610.70Barchart | Table
Spo080820.70Barchart | Table
Spo063180.70Barchart | Table
Spo109800.70Barchart | Table
Spo201610.70Barchart | Table
Spo192070.70Barchart | Table
Spo043900.69Barchart | Table
Spo001700.69Barchart | Table
Spo203760.69Barchart | Table
Spo155830.69Barchart | Table
Spo118500.69Barchart | Table
Spo249020.69Barchart | Table
Spo081600.69Barchart | Table
Spo247030.69Barchart | Table
Spo023800.69Barchart | Table
Spo068630.69Barchart | Table
Spo055890.69Barchart | Table
Spo031310.69Barchart | Table
Spo159390.69Barchart | Table
Spo043110.69Barchart | Table
Spo065010.69Barchart | Table
Spo029420.68Barchart | Table
Spo146920.68Barchart | Table
Spo183700.68Barchart | Table
Spo056940.68Barchart | Table
Spo242270.68Barchart | Table
Spo052750.67Barchart | Table
Spo047550.67Barchart | Table
Spo163670.67Barchart | Table
Spo079620.67Barchart | Table
Spo187190.67Barchart | Table
Spo035730.67Barchart | Table
Spo054170.67Barchart | Table
Spo103900.67Barchart | Table
Spo057830.67Barchart | Table
Spo025950.67Barchart | Table
Spo157430.67Barchart | Table
Spo057480.67Barchart | Table
Spo141650.67Barchart | Table
Spo243950.67Barchart | Table
Spo010610.67Barchart | Table
Spo110260.66Barchart | Table
Spo192000.66Barchart | Table
Spo259540.66Barchart | Table
Spo051140.66Barchart | Table
Spo194410.66Barchart | Table
Spo202840.66Barchart | Table
Spo171090.66Barchart | Table
Spo213750.66Barchart | Table
Spo035270.66Barchart | Table
Spo034730.66Barchart | Table
Spo067060.66Barchart | Table
Spo105180.66Barchart | Table
Spo234960.66Barchart | Table
Spo240010.66Barchart | Table
Spo256690.66Barchart | Table
Spo103220.66Barchart | Table
Spo249180.66Barchart | Table
Spo007800.66Barchart | Table
Spo005250.66Barchart | Table
Spo112880.66Barchart | Table
Spo182120.66Barchart | Table
Spo071450.65Barchart | Table
Spo227400.65Barchart | Table
Spo232410.65Barchart | Table
Spo060940.65Barchart | Table
Spo160970.65Barchart | Table
Spo003630.65Barchart | Table
Spo201410.65Barchart | Table
Spo179290.65Barchart | Table
Spo048930.65Barchart | Table