Spo12688 (gene)

Overview
NameSpo12688
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00929 : 188974 .. 192812 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGGTTTCGTTTCCTGTCTGTTAGAAACAATATTTTTAGTGTTCCCATTTAAATTTTTGCTTAAATGCAGCTTTGTTCGTCCTTTGGATGAGCTGAGCTATATATGCTGCTTCTATTATCACTAGAGTTCTGAATATGTTGAATATTTTCGGTATGTTCCAGTCATTTTGTTTTTATTGCTTTTGAATCCAAGGAAATTTAGGAGTACTTTATGTTTCTCGATCTGTTTCAATGTTGATCCCTTATCTCTTACCGTAAAATTGTAAAGCTACTTCGTATTAAATAGTTGTTGTCAACACGAAGGCTAAAACTTGTGACCTTACAAGAGGGATTATTAATTATTATTCATCTTTATCAAACAATGAAGCAATAGTTTATCTTGCAATATAAGAAGAGAAAATGAACACAATCATTTCAATACAGTCTTATCATTTTTAAAGAAAACTTGGGCTATCTCCCACCTTCGGCTTCTTCGTTGTTAGGATTTTGTTCGGGTTTGAAAGGTGGCTATATCAGAAGAAAATAAAACTATCATTTGATTGTTAAACATGGGGTATGGCATTGTGCACTAACTAAGGTACCTTAGGCTTACATGCCGTGGTACCGTTTAAGTCATAATATAACCAATACCTAGTATTATGTATTATTCTACTAATTTGTCTATACCAAAATATATGTGCCAATTTTTTAAAATAATTATTAACGTTATAAAAATGGTTGATACTAGTCAATATCTCTCTATTTTTTCTTTGTGGGATCTAATATTCACATGTGAACGATACTCTTAATAGGGGAATAAGAGTCTATGCTCCATATTTTAGGATGGAAGGAGTATGAGCATATCACCCACAAAAGGAAAGTTGCACAAAATTGGAAGGAGTACTATCCTATCGTTAATTCGTTATGGATGCTCTTATGCCAGTTCTTATTCCTAGGTTGAACTAGTGCTACTGCTTGCTACTTAAACGGTTAAACCATTCGCAAGATGTTACGTAGGACTAGAGGAGCCAAAATAACGATCTTTATGTCACAAATTATGCTTTACAAGAGTTTTCAAATAGAGCTTGAGGACCAGCAATCATGACAATAAAATTAGCTAGCATGTAAACTGGTCAACTATACATGCAGGTCAGACTCTTGGAAATGATGAAATCGAGTGAAAGAATTCTCACTCATAAGAGTTGTAGCTGGTAGACACCAAACCAGAGAAATCTAAACACTTGTTAAGGGGCGAGGGTATAACATGTTTATTTTTTATTTAAAAACATAATTAGTCATAGTTTAGTCTTCTACTAACAGGTAAACAAATGAATGTATGAATCACATATGTTCATGAATAATGAAAATTTAGTGGAGGTAAGTAGCTTTTATATACGGAGTAGCACAAATCAAATTGGTATCTACCAAAACTAACGAACTGGAAGGTACAACAAAACAAGGGAAGGGAAAACAAATATGTTTTCTGTAAACTAGAAAAACAACAGGTTAAACAAAAGGGGGAAAAGGTGTTGATAGTTGTCACTTCTGACTGAAACATGTAAATTTTGTAATCTTTCCTCGAAAGATTTTTTTTAGATAAACACACGCCACACGGCCCTTACCAATAATTTACCATCGGTACATCGCCGACCCTACCAATGTGAGCTCGGTGAGGCGGCATATTGTGATGTGTGAGCAAACAATCACATCGCCATTTCGATAAAAATATGTACCATTTCTTTGAAAAAGAGTACCATTTCATTAAAGAAATGAAATAGTAACATTTCGTTAAACAGATTACCATTTCGATAAAATTTGTACCATTTTGCTAAAAGTATGTACCATTTCGTTAAAAACATGTACCATTTCTTTTAAAAAAAATGTACATTTTCATTGAATTTTTTTGCTGTTATGTTTTTACAAAAGCATAACAGACTATCGTTTTGACTTCCTCCTACCAATGTAGGTTGAGAAATGAACGAGTATGGCATATTTAATTTAAAATCATAACCACAAGTCACTAATTAGTTTTAACAAAAAAAAAAAAAAACCATCTGATAATTAGTAAATTGTTAGATAACATGTTAGTATGTCACCACCTTCAACCCAGCTGACAGACTATTGAACATGATTTGACAATTAAGTATGTGTTAAACGGTTGCTAGGAAACAGATCACTTTGTGTATTATTTAATTATGGGGGCCAATATGTGTTAAAAAGTTCAAGTTGGAGACACTGGAGAAAATGGCAACTAAACAAAAAACTCCACTGAAAAAGCAATCTAAAAAATCTAGGTAGTAGTGGTAGCAGAGAAACAGTGTAATTCAATCAGTTGCTTCTTAACTAACAGTTTGATCCACTGTTTGGTAGTTGAAGTTGAAGATGTCCAAATCTTTACTCATCCTTATTCTTCTCAATTCAATTATATGCCCAACACTTTGTAGTTCAATGGCCACTATAATATATATGGCACTATTTGTTAGTTGATAATGGCTTACTTTTTAAATACACTTTAGGAGAGAAGATGATTGAGCATTGGACCTTAACATATCAACCATAAATTAATAGATATGAGTTGTTTCTCCCCACAATAGTGGAGAGATTCCTTTGTTTTTTTATAGAGGTATTTGGAAGGAAAGGTAAGACCTCTTGGTGGACTTTGTTAAAGGATCTATCACATGCTACCTAGTATGTTAAACTAGAGTTGGCAAAAGTTGACCTGATACAACCCGTTCGAATCGGACATAAAGCTCGTAGATTTTCGGGATATGATTTTCAGACTGTTTGATTGATTGAACTGATACAATAAATGAGATATATCATATTCAGATATTTTACATAGGATATTAGAAACGTGATCTAGAATACTTAACTCTCAATACTTGCACTTTTTTTATGTTTTATTTGTCTATTCTATTATTGTTTTCATCCAAATGACGGATTTTAAACCAAATTGGGCTAAACAATCAAGCTTTAGATAACTTATGTGTTTGCTTAATGTTCTCTTTTTTTAGGGTTAGTTTTTAAAACAATAAGTAGTTCACTATTTAAGACAAATAGAAAAAGCTTTCACCATCAAAAAACGTTTGAAGAGATTCAGATATCAGCGACTGTGTGGAATTGTCTATTGCTAAGTTATAATACTCAGAGGGCTAATTCTCAGGGTACTGCAGCCTGCAATGCTACCTTTACTCAATGTGCTCAAAACGCTTGCACTTTCTTTATGGTTTTTCCAGGTTACTGACTGTGCCTCCCTTGAGAGGGTAACAGCCACAGGGCGTAGTACAGAAAGTCAGATATAAATCTGCTGTTACATTACATAATGAAAAGACAAAATCAAGTGGATTGAAAAGAGAGGGGGTGGGGTGCAAGCTTATTAGGGTAACATGTTCCATGAATCATGAATCTAAATTCAAAAGGATACAAAATAAATAACCACCCCTTTAACCATTCTGAAAGAGCCATTCCCTTTAGAATTGGTAAGAGGGAACAGGGTGTTATTGCAACAATAAGCCCTACCAGTTGGTTCAAATATGGTTGAAAAATATCACAAACAACAATAATCTCAGTGGATCCTACCATTGGTAGAGCCCCAACAGATATCGACGAACGCTGCCCTACCGACAAGTCGGTAACAACTCTGTTCTAAGCCGATTCTGTTTGAAACTGCATTCTGTAAAATAGTTAAGCAGACTTCATTTCTGATCAATATCAGAATCAACAAATTATGAACAAAAAATTATGGTACGAAAAAACAGGGGAGAAAAAAAAACCATTAAGAAAAACACAACTGAACTTCAACGCGTTTCTTTTATATGAGATACAGTTAGTAATCAATGCTGGGATAGTTCCATAG

mRNA sequence

ATGTTTGGTTTCGTTTCCTGTCTGTTAGAAACAATATTTTTAGTGTTCCCATTTAAATTTTTGCTTAAATGCAGCTTTAGGGCTAATTCTCAGGGTACTGCAGCCTGCAATGCTACCTTTACTCAATGTGCTCAAAACGCTTGCACTTTCTTTATGGTTTTTCCAGGGGAGAAAAAAAAACCATTAAGAAAAACACAACTGAACTTCAACGCGTTTCTTTTATATGAGATACAGTTAGTAATCAATGCTGGGATAGTTCCATAG

Coding sequence (CDS)

ATGTTTGGTTTCGTTTCCTGTCTGTTAGAAACAATATTTTTAGTGTTCCCATTTAAATTTTTGCTTAAATGCAGCTTTAGGGCTAATTCTCAGGGTACTGCAGCCTGCAATGCTACCTTTACTCAATGTGCTCAAAACGCTTGCACTTTCTTTATGGTTTTTCCAGGGGAGAAAAAAAAACCATTAAGAAAAACACAACTGAACTTCAACGCGTTTCTTTTATATGAGATACAGTTAGTAATCAATGCTGGGATAGTTCCATAG

Protein sequence

MFGFVSCLLETIFLVFPFKFLLKCSFRANSQGTAACNATFTQCAQNACTFFMVFPGEKKKPLRKTQLNFNAFLLYEIQLVINAGIVP
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo12688.1Spo12688.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo12688.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12688.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12688.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12688.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009817 defense response to fungus, incompatible interaction
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0035335 peptidyl-tyrosine dephosphorylation
biological_process GO:0043407 negative regulation of MAP kinase activity
biological_process GO:0009755 hormone-mediated signaling pathway
biological_process GO:0015979 photosynthesis
biological_process GO:0009902 chloroplast relocation
biological_process GO:0006694 steroid biosynthetic process
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0016114 terpenoid biosynthetic process
biological_process GO:0009231 riboflavin biosynthetic process
biological_process GO:0009733 response to auxin
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0006487 protein N-linked glycosylation
biological_process GO:0009926 auxin polar transport
biological_process GO:0042432 indole biosynthetic process
biological_process GO:0042545 cell wall modification
biological_process GO:0007020 microtubule nucleation
biological_process GO:0007389 pattern specification process
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0009737 response to abscisic acid
biological_process GO:0006570 tyrosine metabolic process
biological_process GO:0006629 lipid metabolic process
biological_process GO:0006950 response to stress
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0010207 photosystem II assembly
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0006886 intracellular protein transport
biological_process GO:0042793 plastid transcription
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009415 response to water
biological_process GO:0006364 rRNA processing
biological_process GO:0008299 isoprenoid biosynthetic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0009987 cellular process
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0008615 pyridoxine biosynthetic process
biological_process GO:0009443 pyridoxal 5'-phosphate salvage
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006508 proteolysis
biological_process GO:0042742 defense response to bacterium
biological_process GO:0008361 regulation of cell size
biological_process GO:0006865 amino acid transport
biological_process GO:0010264 myo-inositol hexakisphosphate biosynthetic process
biological_process GO:0008152 metabolic process
biological_process GO:0009646 response to absence of light
biological_process GO:0006013 mannose metabolic process
biological_process GO:0019853 L-ascorbic acid biosynthetic process
biological_process GO:0009298 GDP-mannose biosynthetic process
biological_process GO:0006000 fructose metabolic process
biological_process GO:0006816 calcium ion transport
biological_process GO:0007030 Golgi organization
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0042908 xenobiotic transport
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0000023 maltose metabolic process
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0009651 response to salt stress
biological_process GO:0009627 systemic acquired resistance
biological_process GO:0009723 response to ethylene
biological_process GO:0034976 response to endoplasmic reticulum stress
biological_process GO:0046686 response to cadmium ion
biological_process GO:0046680 response to DDT
biological_process GO:0033591 response to L-ascorbic acid
biological_process GO:0009744 response to sucrose
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0010015 root morphogenesis
biological_process GO:0016126 sterol biosynthetic process
biological_process GO:0015031 protein transport
biological_process GO:0006621 protein retention in ER lumen
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0010204 defense response signaling pathway, resistance gene-independent
biological_process GO:0030244 cellulose biosynthetic process
biological_process GO:0016132 brassinosteroid biosynthetic process
biological_process GO:0006084 acetyl-CoA metabolic process
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0055085 transmembrane transport
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0006810 transport
biological_process GO:0010043 response to zinc ion
biological_process GO:0006098 pentose-phosphate shunt
cellular_component GO:0009505 plant-type cell wall
cellular_component GO:0009506 plasmodesma
cellular_component GO:0033179 proton-transporting V-type ATPase, V0 domain
cellular_component GO:0009349 riboflavin synthase complex
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005622 intracellular
cellular_component GO:0005829 cytosol
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016471 vacuolar proton-transporting V-type ATPase complex
cellular_component GO:0005773 vacuole
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0048046 apoplast
cellular_component GO:0005618 cell wall
cellular_component GO:0005576 extracellular region
cellular_component GO:0016020 membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0005634 nucleus
cellular_component GO:0009570 chloroplast stroma
molecular_function GO:0051996 squalene synthase activity
molecular_function GO:0004310 farnesyl-diphosphate farnesyltransferase activity
molecular_function GO:0042626 ATPase activity, coupled to transmembrane movement of substances
molecular_function GO:0003723 RNA binding
molecular_function GO:0008422 beta-glucosidase activity
molecular_function GO:0050529 polyneuridine-aldehyde esterase activity
molecular_function GO:0004185 serine-type carboxypeptidase activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0004746 riboflavin synthase activity
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0008559 xenobiotic transmembrane transporting ATPase activity
molecular_function GO:0004476 mannose-6-phosphate isomerase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0010181 FMN binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0046923 ER retention sequence binding
molecular_function GO:0016788 hydrolase activity, acting on ester bonds
molecular_function GO:0051087 chaperone binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity
molecular_function GO:0052727 capsanthin synthase activity
molecular_function GO:0015078 proton transmembrane transporter activity
molecular_function GO:0052728 capsorubin synthase activity
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function GO:0004725 protein tyrosine phosphatase activity
molecular_function GO:0008138 protein tyrosine/serine/threonine phosphatase activity
molecular_function GO:0004733 pyridoxamine-phosphate oxidase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0008233 peptidase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0050321 tau-protein kinase activity
molecular_function GO:0016887 ATPase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo038960.81Barchart | Table
Spo236260.79Barchart | Table
Spo029790.78Barchart | Table
Spo026490.77Barchart | Table
Spo014480.77Barchart | Table
Spo148300.77Barchart | Table
Spo102990.77Barchart | Table
Spo057770.75Barchart | Table
Spo230440.75Barchart | Table
Spo194310.74Barchart | Table
Spo036380.74Barchart | Table
Spo019250.74Barchart | Table
Spo011350.73Barchart | Table
Spo154470.73Barchart | Table
Spo103730.73Barchart | Table
Spo251700.73Barchart | Table
Spo076030.73Barchart | Table
Spo008950.73Barchart | Table
Spo229210.72Barchart | Table
Spo180750.72Barchart | Table
Spo003140.72Barchart | Table
Spo055080.72Barchart | Table
Spo179080.72Barchart | Table
Spo161880.72Barchart | Table
Spo046150.71Barchart | Table
Spo179860.71Barchart | Table
Spo001990.71Barchart | Table
Spo059150.71Barchart | Table
Spo178600.71Barchart | Table
Spo182310.71Barchart | Table
Spo244250.70Barchart | Table
Spo136400.70Barchart | Table
Spo100860.70Barchart | Table
Spo206510.70Barchart | Table
Spo016860.70Barchart | Table
Spo040930.70Barchart | Table
Spo185780.70Barchart | Table
Spo077730.70Barchart | Table
Spo053780.70Barchart | Table
Spo248470.70Barchart | Table
Spo056570.70Barchart | Table
Spo241450.70Barchart | Table
Spo001650.69Barchart | Table
Spo024640.69Barchart | Table
Spo052350.69Barchart | Table
Spo058170.69Barchart | Table
Spo083390.69Barchart | Table
Spo086510.69Barchart | Table
Spo100300.69Barchart | Table
Spo123760.69Barchart | Table
Spo133170.69Barchart | Table
Spo159520.69Barchart | Table
Spo160790.69Barchart | Table
Spo163450.69Barchart | Table
Spo173450.69Barchart | Table
Spo180800.69Barchart | Table
Spo186180.69Barchart | Table
Spo205240.69Barchart | Table
Spo207560.69Barchart | Table
Spo222720.69Barchart | Table
Spo232320.69Barchart | Table
Spo261350.69Barchart | Table
Spo266100.69Barchart | Table
Spo266880.69Barchart | Table
Spo240460.68Barchart | Table
Spo246300.68Barchart | Table
Spo123540.68Barchart | Table
Spo193930.68Barchart | Table
Spo092320.68Barchart | Table
Spo188440.68Barchart | Table
Spo016320.68Barchart | Table
Spo109740.68Barchart | Table
Spo202680.68Barchart | Table
Spo198120.68Barchart | Table
Spo194420.68Barchart | Table
Spo159490.68Barchart | Table
Spo049540.68Barchart | Table
Spo128230.67Barchart | Table
Spo078960.67Barchart | Table
Spo061640.67Barchart | Table
Spo044250.67Barchart | Table
Spo042980.67Barchart | Table
Spo185890.67Barchart | Table
Spo192590.67Barchart | Table
Spo006770.67Barchart | Table
Spo258530.67Barchart | Table
Spo208370.67Barchart | Table
Spo212150.67Barchart | Table
Spo217480.67Barchart | Table
Spo282670.67Barchart | Table
Spo028900.67Barchart | Table
Spo109900.67Barchart | Table
Spo116350.67Barchart | Table
Spo018760.67Barchart | Table
Spo135920.67Barchart | Table
Spo115730.66Barchart | Table
Spo100310.66Barchart | Table
Spo028130.66Barchart | Table
Spo042120.66Barchart | Table
Spo237120.66Barchart | Table
Spo281460.66Barchart | Table
Spo195950.66Barchart | Table
Spo177260.66Barchart | Table
Spo012140.66Barchart | Table
Spo118600.66Barchart | Table
Spo232570.66Barchart | Table
Spo241330.66Barchart | Table
Spo096380.66Barchart | Table
Spo220520.66Barchart | Table
Spo211440.66Barchart | Table
Spo225830.66Barchart | Table
Spo170440.65Barchart | Table
Spo152730.65Barchart | Table
Spo214940.65Barchart | Table
Spo149110.65Barchart | Table
Spo232280.65Barchart | Table
Spo233180.65Barchart | Table
Spo209070.65Barchart | Table
Spo143380.65Barchart | Table
Spo009660.65Barchart | Table
Spo146380.65Barchart | Table
Spo031490.65Barchart | Table
Spo078920.65Barchart | Table
Spo029180.65Barchart | Table