Spo12694 (gene)

Overview
NameSpo12694
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_02777 : 23506 .. 25576 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTCTCACTCCCTCACCACTCAATTTTAATTCTCAAATAATTTTCTCACCCCTCTTCATTTTGAACACAAAAAATGGTCGGCCGCCTGTCCGCCATGTATTCCTCCACAGTTGGTGTAATTGGCCCATCAAACCACCAGCATCAACAACTCGGTCACCAAAATGATAGCCCAGGGTTAGGTTTTGACCTTAACTTCCCCCCGACAATGGTTGTTCCGCCACCCAACCAATTCACTCACGCAAACACTTTGCATGTGGCCGATCAAGGGCCTCTTACATTCCCTCCACTATATCAAGGCGGTTCGACCACCTTGCCAACGCTTTCGGAGTCCTTGCTGCCACCCTTACCACAATCATACCTTCTAGACACCCTACTGCCACCACTGCCACCAGCTATGGCATCAACTCAGATCCCACCTTTGCCATCGTATATGCTATCGGCACCAAGGATGGTCAAACGTAAGAGTGAGGACGTCGGAGATATTGGACAATTATACATGCTCTTCCCCAATGATCGATTTGGGTTAGTTTATGCTGATTACAGTGCACGCTTGGGCTGTTCCCCTAACAACATCGAAATAATCAGAGCAAATGGGTTGGTGATTCCAGCTGAGTTGACGGCGGGGGAGCTCAACATCCAGGACGGCGAGACTTTGTGTGTTCGAGGTCTAGTAAGTATTTAATAATTTTAATTAGTGTCATTTTAAATAATTGAGATAGCTTAATCATTTCGTCCGCTTTTATTACTTAAGTTCGCTTTACAATTGTGTTAATCATGTTGTGTGATTTGTGTAGTTGGTTTTAGGATTTTATTAATCAGGAAATTCTAGATCTATTTATTTTACTTTAAGTTTAACCTTTTTGTGATTAATAATTTGTATAATTTTAATGTGCATTTTATGTTACTTTTTATTAATAATTGGTAATTGGTAATAGTGGAATTTGTAACATTATTTTTAGTAATGTAATGGTTTTTGTATGAGGGTAATTATTGGTTTGTTTTGATAATTGGTATATAATTAGTGATAATTGGATATTGGGAATTAATTAGTAATACGGGTTATTGGAATTAAATATTGTTTTTTGGCAAAAGTGGACTTACTGAAGGACGTGTGGTCCTTTGAAAAAACCAAAATTGATTGAAAGTGAAGTTGGTTTTTTGGATGTGTTAATTTAAATAACATTAGAGTTGACTTTAGTGATGACTTGTACCAAATTAATGTAAGATATTAAAAAATTCCTAACGTGTGGTTTGAATAATATGAGTTGTAATAATTTGAACCTAATGTGATCTTGGAGAAATTGGCCAATTATTTGGAATAGTAACAAAGTTCTTGTAATCTCAGTTGCAGGATTTGAACGTCAACACACACTACTGTACTTTTTTCATCCGGCCAATGGTGGACCGGCCAATCGGTTGGACGGCGAAGGCAGCCTATGATGTGCCACTTTGGAAAGTTATATATGATTGGGCTGCCCTCTTGAAGATCGATGCATGGAGGATCACGATGTACCGCAACTTCAAAGAGCTTCCAATAACTCGCACAATTAGAGAGTCGGAAATTTAGAACTGGAGCACCTTGTATGCGTGCATACAACTCAATTGAACTAGGAAGAAGCGATGTCTCAATGGGTACGTAAGTTATGGACTTATGCGCGATGTGATGTTTTGCGGACCCATTTTTTGCAAATATTTAGGGACTATTTGGATTATGGGTTAAATGGGAGTTAATGTAGCAAGTAACTGGACACGGGGTCCTTTTTGATAACGTTTGTTTACAACTCTAGGCTAGTAGTGCCACTTTTGGGGATTTACAAACTTGATTATGCCTTTTGAATATTTCCCACATCCATTTTGTAAAGAACGTTTATATTTATAAGCTAATAGTGCCACACTTTTGGGTTTGGAACATAATAACTTGATTATGCCATTGGAATATTGCCCAAATCTATGTTGTGCATCGTGTTTTATCCATCCTATAGGGATAAGGAGTTTTGAAAATCTAAAGTTATTGTTGACTATTAGTAGTGTTTATTCAACTTTATTATTATTATTATTGTTGACTATTA

mRNA sequence

CTTTTCTCACTCCCTCACCACTCAATTTTAATTCTCAAATAATTTTCTCACCCCTCTTCATTTTGAACACAAAAAATGGTCGGCCGCCTGTCCGCCATGTATTCCTCCACAGTTGGTGTAATTGGCCCATCAAACCACCAGCATCAACAACTCGGTCACCAAAATGATAGCCCAGGGTTAGGTTTTGACCTTAACTTCCCCCCGACAATGGTTGTTCCGCCACCCAACCAATTCACTCACGCAAACACTTTGCATGTGGCCGATCAAGGGCCTCTTACATTCCCTCCACTATATCAAGGCGGTTCGACCACCTTGCCAACGCTTTCGGAGTCCTTGCTGCCACCCTTACCACAATCATACCTTCTAGACACCCTACTGCCACCACTGCCACCAGCTATGGCATCAACTCAGATCCCACCTTTGCCATCGTATATGCTATCGGCACCAAGGATGGTCAAACGTAAGAGTGAGGACGTCGGAGATATTGGACAATTATACATGCTCTTCCCCAATGATCGATTTGGGTTAGTTTATGCTGATTACAGTGCACGCTTGGGCTGTTCCCCTAACAACATCGAAATAATCAGAGCAAATGGGTTGGTGATTCCAGCTGAGTTGACGGCGGGGGAGCTCAACATCCAGGACGGCGAGACTTTGTGTGTTCGAGGTCTATTGCAGGATTTGAACGTCAACACACACTACTGTACTTTTTTCATCCGGCCAATGGTGGACCGGCCAATCGGTTGGACGGCGAAGGCAGCCTATGATGTGCCACTTTGGAAAGTTATATATGATTGGGCTGCCCTCTTGAAGATCGATGCATGGAGGATCACGATGTACCGCAACTTCAAAGAGCTTCCAATAACTCGCACAATTAGAGAGTCGGAAATTTAGAACTGGAGCACCTTGTATGCGTGCATACAACTCAATTGAACTAGGAAGAAGCGATGTCTCAATGGGTACGTAAGTTATGGACTTATGCGCGATGTGATGTTTTGCGGACCCATTTTTTGCAAATATTTAGGGACTATTTGGATTATGGGTTAAATGGGAGTTAATGTAGCAAGTAACTGGACACGGGGTCCTTTTTGATAACGTTTGTTTACAACTCTAGGCTAGTAGTGCCACTTTTGGGGATTTACAAACTTGATTATGCCTTTTGAATATTTCCCACATCCATTTTGTAAAGAACGTTTATATTTATAAGCTAATAGTGCCACACTTTTGGGTTTGGAACATAATAACTTGATTATGCCATTGGAATATTGCCCAAATCTATGTTGTGCATCGTGTTTTATCCATCCTATAGGGATAAGGAGTTTTGAAAATCTAAAGTTATTGTTGACTATTAGTAGTGTTTATTCAACTTTATTATTATTATTATTGTTGACTATTA

Coding sequence (CDS)

ATGGTCGGCCGCCTGTCCGCCATGTATTCCTCCACAGTTGGTGTAATTGGCCCATCAAACCACCAGCATCAACAACTCGGTCACCAAAATGATAGCCCAGGGTTAGGTTTTGACCTTAACTTCCCCCCGACAATGGTTGTTCCGCCACCCAACCAATTCACTCACGCAAACACTTTGCATGTGGCCGATCAAGGGCCTCTTACATTCCCTCCACTATATCAAGGCGGTTCGACCACCTTGCCAACGCTTTCGGAGTCCTTGCTGCCACCCTTACCACAATCATACCTTCTAGACACCCTACTGCCACCACTGCCACCAGCTATGGCATCAACTCAGATCCCACCTTTGCCATCGTATATGCTATCGGCACCAAGGATGGTCAAACGTAAGAGTGAGGACGTCGGAGATATTGGACAATTATACATGCTCTTCCCCAATGATCGATTTGGGTTAGTTTATGCTGATTACAGTGCACGCTTGGGCTGTTCCCCTAACAACATCGAAATAATCAGAGCAAATGGGTTGGTGATTCCAGCTGAGTTGACGGCGGGGGAGCTCAACATCCAGGACGGCGAGACTTTGTGTGTTCGAGGTCTATTGCAGGATTTGAACGTCAACACACACTACTGTACTTTTTTCATCCGGCCAATGGTGGACCGGCCAATCGGTTGGACGGCGAAGGCAGCCTATGATGTGCCACTTTGGAAAGTTATATATGATTGGGCTGCCCTCTTGAAGATCGATGCATGGAGGATCACGATGTACCGCAACTTCAAAGAGCTTCCAATAACTCGCACAATTAGAGAGTCGGAAATTTAG

Protein sequence

MVGRLSAMYSSTVGVIGPSNHQHQQLGHQNDSPGLGFDLNFPPTMVVPPPNQFTHANTLHVADQGPLTFPPLYQGGSTTLPTLSESLLPPLPQSYLLDTLLPPLPPAMASTQIPPLPSYMLSAPRMVKRKSEDVGDIGQLYMLFPNDRFGLVYADYSARLGCSPNNIEIIRANGLVIPAELTAGELNIQDGETLCVRGLLQDLNVNTHYCTFFIRPMVDRPIGWTAKAAYDVPLWKVIYDWAALLKIDAWRITMYRNFKELPITRTIRESEI
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo12694.1Spo12694.1mRNA


Homology
[Close]
BLAST of Spo12694.1 vs. NCBI nr
Match: gi|902202806|gb|KNA14377.1| (hypothetical protein SOVF_107860 [Spinacia oleracea])

HSP 1 Score: 557.8 bits (1436), Expect = 1.100e-155
Identity = 270/272 (99.26%), Postives = 270/272 (99.26%), Query Frame = 1 

		  

Query: 1   MVGRLSAMYSSTVGVIGPSNHQHQQLGHQNDSPGLGFDLNFPPTMVVPPPNQFTHANTLH 60
           MVGRLSAMYSSTVGVIGPSNHQHQQLGHQNDSPGLGFDLNFPPTMVVPPPNQFTHANTLH
Sbjct: 1   MVGRLSAMYSSTVGVIGPSNHQHQQLGHQNDSPGLGFDLNFPPTMVVPPPNQFTHANTLH 60

Query: 61  VADQGPLTFPPLYQGGSTTLPTLSESLLPPLPQSYLLDTLLPPLPPAMASTQIPPLPSYM 120
           VADQGPLTFPPLYQGGSTTLPTLSESLLPPLPQSYLLDTLLPPLPPAMASTQIPP PSYM
Sbjct: 61  VADQGPLTFPPLYQGGSTTLPTLSESLLPPLPQSYLLDTLLPPLPPAMASTQIPPFPSYM 120

Query: 121 LSAPRMVKRKSEDVGDIGQLYMLFPNDRFGLVYADYSARLGCSPNNIEIIRANGLVIPAE 180
           LSAPRMVKRKSEDVGDIGQLYMLFPNDRFGLVYADYSARLGCSPNNIEIIR NGLVIPAE
Sbjct: 121 LSAPRMVKRKSEDVGDIGQLYMLFPNDRFGLVYADYSARLGCSPNNIEIIRVNGLVIPAE 180

Query: 181 LTAGELNIQDGETLCVRGLLQDLNVNTHYCTFFIRPMVDRPIGWTAKAAYDVPLWKVIYD 240
           LTAGELNIQDGETLCVRGLLQDLNVNTHYCTFFIRPMVDRPIGWTAKAAYDVPLWKVIYD
Sbjct: 181 LTAGELNIQDGETLCVRGLLQDLNVNTHYCTFFIRPMVDRPIGWTAKAAYDVPLWKVIYD 240

Query: 241 WAALLKIDAWRITMYRNFKELPITRTIRESEI 273
           WAALLKIDAWRITMYRNFKELPITRTIRESEI
Sbjct: 241 WAALLKIDAWRITMYRNFKELPITRTIRESEI 272
[Close]
BLAST of Spo12694.1 vs. NCBI nr
Match: gi|902203552|gb|KNA14591.1| (hypothetical protein SOVF_106080, partial [Spinacia oleracea])

HSP 1 Score: 179.5 bits (454), Expect = 8.000e-42
Identity = 116/270 (42.96%), Postives = 148/270 (54.81%), Query Frame = 1 

		  

Query: 8   MYSSTVGVIGPSNHQHQQLGHQNDSPGLGF-DLNFPPTM--VVPPPNQ-FTHA-----NT 67
           M+SSTVG   P+  +   L  +   P LGF D  +PP +   VPP +Q   HA     + 
Sbjct: 1   MHSSTVGHTEPALIEPYPLFME---PDLGFLDEEYPPPIHTAVPPSHQEHMHATQEAFSD 60

Query: 68  LHVADQGPLTFPPLYQGGSTTLPTLSESLLPPLPQSYLLDTLLPPLPPAMASTQIPPLPS 127
           L + +QGP   PPL                P  P        L P PP    TQ+PPLP 
Sbjct: 61  LRLTNQGP---PPL---------------TPWSP--------LTPHPP----TQVPPLPP 120

Query: 128 YMLSAPRMVKRKSEDVGDIGQLYMLFPNDRFGLVYADYSARLGCSPNNIEIIRANGLVIP 187
           +    P  +K  SE+ GD G +YM FP D F LVY +Y+ RLG + N I + R NG V+P
Sbjct: 121 W----PIQIKLMSEEEGDTGVIYMFFPTDPFNLVYGEYARRLGANANQIAVFRLNGSVVP 180

Query: 188 AELTAGELNIQDGETLCVRGLLQDLNVNTHYCTFFIRPMVDRPIGWTAKAAYDVPLWKVI 247
           + L   +LN+ DG+TL VRGL+Q LNVNTH CTFF+R MVD   GW  KAA++ PLW V 
Sbjct: 181 SGLLTCQLNLHDGQTLVVRGLVQGLNVNTHMCTFFVRAMVDWYPGWFVKAAFNAPLWTVF 233

Query: 248 YDWAALLKIDAWRITMYRNFKELPITRTIR 269
           YDWA LL +    + M+RNF +L    TIR
Sbjct: 241 YDWAILLGVQPAMVKMFRNFDQLDKNLTIR 233
[Close]
BLAST of Spo12694.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R6D9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_107860 PE=4 SV=1)

HSP 1 Score: 557.8 bits (1436), Expect = 7.500e-156
Identity = 270/272 (99.26%), Postives = 270/272 (99.26%), Query Frame = 1 

		  

Query: 1   MVGRLSAMYSSTVGVIGPSNHQHQQLGHQNDSPGLGFDLNFPPTMVVPPPNQFTHANTLH 60
           MVGRLSAMYSSTVGVIGPSNHQHQQLGHQNDSPGLGFDLNFPPTMVVPPPNQFTHANTLH
Sbjct: 1   MVGRLSAMYSSTVGVIGPSNHQHQQLGHQNDSPGLGFDLNFPPTMVVPPPNQFTHANTLH 60

Query: 61  VADQGPLTFPPLYQGGSTTLPTLSESLLPPLPQSYLLDTLLPPLPPAMASTQIPPLPSYM 120
           VADQGPLTFPPLYQGGSTTLPTLSESLLPPLPQSYLLDTLLPPLPPAMASTQIPP PSYM
Sbjct: 61  VADQGPLTFPPLYQGGSTTLPTLSESLLPPLPQSYLLDTLLPPLPPAMASTQIPPFPSYM 120

Query: 121 LSAPRMVKRKSEDVGDIGQLYMLFPNDRFGLVYADYSARLGCSPNNIEIIRANGLVIPAE 180
           LSAPRMVKRKSEDVGDIGQLYMLFPNDRFGLVYADYSARLGCSPNNIEIIR NGLVIPAE
Sbjct: 121 LSAPRMVKRKSEDVGDIGQLYMLFPNDRFGLVYADYSARLGCSPNNIEIIRVNGLVIPAE 180

Query: 181 LTAGELNIQDGETLCVRGLLQDLNVNTHYCTFFIRPMVDRPIGWTAKAAYDVPLWKVIYD 240
           LTAGELNIQDGETLCVRGLLQDLNVNTHYCTFFIRPMVDRPIGWTAKAAYDVPLWKVIYD
Sbjct: 181 LTAGELNIQDGETLCVRGLLQDLNVNTHYCTFFIRPMVDRPIGWTAKAAYDVPLWKVIYD 240

Query: 241 WAALLKIDAWRITMYRNFKELPITRTIRESEI 273
           WAALLKIDAWRITMYRNFKELPITRTIRESEI
Sbjct: 241 WAALLKIDAWRITMYRNFKELPITRTIRESEI 272
[Close]
BLAST of Spo12694.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R514_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_106080 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 5.600e-42
Identity = 116/270 (42.96%), Postives = 148/270 (54.81%), Query Frame = 1 

		  

Query: 8   MYSSTVGVIGPSNHQHQQLGHQNDSPGLGF-DLNFPPTM--VVPPPNQ-FTHA-----NT 67
           M+SSTVG   P+  +   L  +   P LGF D  +PP +   VPP +Q   HA     + 
Sbjct: 1   MHSSTVGHTEPALIEPYPLFME---PDLGFLDEEYPPPIHTAVPPSHQEHMHATQEAFSD 60

Query: 68  LHVADQGPLTFPPLYQGGSTTLPTLSESLLPPLPQSYLLDTLLPPLPPAMASTQIPPLPS 127
           L + +QGP   PPL                P  P        L P PP    TQ+PPLP 
Sbjct: 61  LRLTNQGP---PPL---------------TPWSP--------LTPHPP----TQVPPLPP 120

Query: 128 YMLSAPRMVKRKSEDVGDIGQLYMLFPNDRFGLVYADYSARLGCSPNNIEIIRANGLVIP 187
           +    P  +K  SE+ GD G +YM FP D F LVY +Y+ RLG + N I + R NG V+P
Sbjct: 121 W----PIQIKLMSEEEGDTGVIYMFFPTDPFNLVYGEYARRLGANANQIAVFRLNGSVVP 180

Query: 188 AELTAGELNIQDGETLCVRGLLQDLNVNTHYCTFFIRPMVDRPIGWTAKAAYDVPLWKVI 247
           + L   +LN+ DG+TL VRGL+Q LNVNTH CTFF+R MVD   GW  KAA++ PLW V 
Sbjct: 181 SGLLTCQLNLHDGQTLVVRGLVQGLNVNTHMCTFFVRAMVDWYPGWFVKAAFNAPLWTVF 233

Query: 248 YDWAALLKIDAWRITMYRNFKELPITRTIR 269
           YDWA LL +    + M+RNF +L    TIR
Sbjct: 241 YDWAILLGVQPAMVKMFRNFDQLDKNLTIR 233
The following BLAST results are available for this feature:
BLAST of Spo12694.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902202806|gb|KNA14377.1|1.1e-15599.2hypothetical protein SOVF_1078... [more]
gi|902203552|gb|KNA14591.1|8.0e-4242.9hypothetical protein SOVF_1060... [more]
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BLAST of Spo12694.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9R6D9_SPIOL7.5e-15699.2Uncharacterized protein OS=Spi... [more]
A0A0K9R514_SPIOL5.6e-4242.9Uncharacterized protein (Fragm... [more]
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BLAST of Spo12694.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12694.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
RNA-Seq Expression
   



Co-expression
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