Spo12710 (gene)

Overview
NameSpo12710
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionDNA-repair protein XRCC4, putative
Locationchr3 : 312819 .. 315927 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACCCAAACGAAGTAGTTGAGATACGAAAAGGGCGGGAAACAGTCAAGCCTAGTTTAGCTTCCAATTTCCAAATCATCTTGCTAAATCTCTTATTTTCACATAAACCCTAAAAATTCTGGGAAAATGGAATCCGAAACAGAAGCAAGACATTCATGCTTGAAACTCGAATTAACACAAGATTCTTCCAATCAAACAATATTCGTAAAGGGGACTTGGTTCCCTTCTCGTTTTTCTCTCTCCATCACCGATGGCTACGACTCTTGGCTATGCACTGGTACTCTCTCAAACCCTCTTTTATCCCTCTTTCTTCTTTTCCACTTGTTGTTTTTGCATGTATTTGATTGGGTAATTAATTGATTAATTTACGGAAATTGAATAGCATCGGAGGAGGATGTGAGAGAGAGAGCAAGCCAGTGGGATCAATCTGTTTCGGAATACATTGAATTTGCAGAAAGGTATTTAGGGTTTCAACAGCCTGGTTCTGTTTATCGTTTTACTGATGCTGGAAATGGCCATAGAAGGGTTAGTTTTCTCCCTCCTCCCTTTTACTTTGAATTTATAATCAATCAGATTGCTGCGAATTTCTGGGTTTTTACTTTTTGTTTGTGCTCAATTTGGGGAAATTAAAAGCTTATTTTGAGTGAAAGGTTGGTGTTGTATAGCTGTCATGGACATTTGAGAAGGAAGGTATTAAGCTGGAATGGAGATGGAGATGTACGCCATCACCAAACAATAAGAATACAACAGCAGCTATATTGGACTTTCTCATGGATGCTAACATTAGATTAAGTGTGAGTCTCTTTTGATCTCTCATATGTCTTGTATTCTATTTCCTTATGTTTAACACTTGAAATTTTCAAGAGGTGATCAATCCAGAATGTGTTAGGTTACATTTCTTTACCCCAAAGCTTGTCAATTGCCTTACCTGGTCAAATTTGCAAAGTCCTGGACTGCTTTTATGGCATAGAAGTAAATAGCTTTTGGCTTTAGTCCAAGGCAAGCCCTGTGTTGAAGGGTGTTGCACTCAGTTATGGTCTTCTTCTTTCTTGCAATGCCGGGGAGGAAGGAGAGATAAAATCATCTTCATTGAGGATCCAATTGAGTCTTTGACTACTTTAAGGAAAGTACTTGTTTACCTTGCCTTAAAGAGAACAAGTTTGATAGGAAATACTCAGGGTGTTCTTGACTTAGAGCCTTGGAGGTGGAAGAGACACCAGATACTTGCCAAAGTTAGAAGAAGTAGGAGCAGAATATGACTCGAAACAGCATGAAGGAGCATTATGTTTTTTCTCAGGTCCACCACGACACTAATCCATATTCGTATAATTAAGCTTGGTATGACGGTCTAACATGTCTAGTGGGCATGATGCCTAGTTAGTATTATCCGCTGTTTTAGTTGCACCACCTTGGTGGTAGTTCAGGTAAAAAAAGGCGTGTAAAAATCTCTTTGGACTCGTGAAGTGAGTAGTGAATGACCCTAAGTTCCTGACCTCAATGTCCCTTGGTGACTGCAAGTTGGTGTACTGTTCTTGTTCTGGTAGGTATGGGGATTAGGACTTGTAGATTAAACCCCAACAAGCCTAACAATGGAATTAGATTTTGGTCCTTTTTCTCTGGGTACAGAACATCAAAGGGGGTTATCTCCAGGTGTAGAGAGTGTTCAATATTATGTGATGGTTTATCTCCAGACCATATTCAGAATTTTAAAAGTTTGTCTCATTACTCTATAACTTACACAGTTGTACCTATCAACCCCTATTCAGTGACATGTATTGTCAGTAGATACTTCGATGTAATCTTCACTAAATGCTTATCCATGCGAAATATGTCTTAGTTTGTTTAAATCAACAGGAAGAAGTTGTCAAAAAGACCGAGTCTTTTGAGCAGCTGAAAGAAGAAGCACATAAATGTTTGGTACAAAGCGAAAAGTTGAGCACCGAGAAAGATGAGTTTGAATCAGAAGTATATGCAAAGGTACTTTGTAGTTTATCCTTTTGTTATCAGAAGTATATCTCTTCAGCTTTTACCAGCATTTTGAATCAGATGAAATGAAATCTCTACTATTATATTGGCTAAGAGCCTGGGATGAGAAGAAAAAAAATATCCTATCTAACGCCGTATTAAAGAAGGATTATTCCCTTGAGAAAAGAGAGCTTAGAAAATCCATTACAGACTTGTCCAGGATCTGAAGCATATATCTTCTCTTTCTGAATCATTCAATGTTTTTGGTTCTAGCTTTGTGAAGTACTCTCATTAGTTAGGATCTAGTTAGAACTTAACTTGTTAGCAATTACAAGTGACTCTTACTGAACCTGGCAAGTTGCAACCATGATGGTAATGAATTTGGTAGGTTTCACTAGAAGGTTGGCATATACTCTTCTGCATTTTGCCTGTTCTTTAATATTAAGTTTAGTAGAGTGAAATACTGAAATTTTTCTAGCTTGCTGAAACTGCCGGTTGATAACTGGGTGTTATTATGTTTTAAGTATTCATGAATCATGAGTATGATAAACTGTTAAGTGGTTATTTACTTGTATTTAAATCTGGTGCTCTTTGCTTTCAGTTTGTGAACGTGCTGAACTCAAAGAAGGCAAAACTAAGGGAGCTTCGTGATCGTCTTTCAAAACAAGAAGCGAGAGGGAAGTTGCCAGAGGAAGAGGATGTTTCTGGTGACGAAACGGAACAATCTAAAAGTGAAACTGATGATGGTAGTGAAGAAACAACTGATTAAGAAACTTCGAAAGATGCTTCACCGAGTAAACCCCGTGCTAAAAAGAGGAATACACCACCTAGGAACTCTTGTTTGGCTGTCTGTTAATTCTAGAGCTTGTTTGACTGCAATGCTCTTTTAGGCTGGGTACTTAATCTCATTCTCATGTTTGGCCTTCTGCAAACTATGCTGCATTTCAACTCACCCTCCTAAAATTACGTGTCGGTTAAACTGTAATGTTTTAATTAAATATGGAGGGACTATCAGTTGTGGCAATGTAATCTACAGTGAAGATAAATTAGTGATGACGAATTCGATTGACTTGTATATGAGTGAACTTTTGATTTGGCAATCTTTGTATTTTATAAGTTAGAAATTACATGAGCTAGTTTGTTT

mRNA sequence

AAAACCCAAACGAAGTAGTTGAGATACGAAAAGGGCGGGAAACAGTCAAGCCTAGTTTAGCTTCCAATTTCCAAATCATCTTGCTAAATCTCTTATTTTCACATAAACCCTAAAAATTCTGGGAAAATGGAATCCGAAACAGAAGCAAGACATTCATGCTTGAAACTCGAATTAACACAAGATTCTTCCAATCAAACAATATTCGTAAAGGGGACTTGGTTCCCTTCTCGTTTTTCTCTCTCCATCACCGATGGCTACGACTCTTGGCTATGCACTGCATCGGAGGAGGATGTGAGAGAGAGAGCAAGCCAGTGGGATCAATCTGTTTCGGAATACATTGAATTTGCAGAAAGGTATTTAGGGTTTCAACAGCCTGGTTCTGTTTATCGTTTTACTGATGCTGGAAATGGCCATAGAAGGCTGTCATGGACATTTGAGAAGGAAGGTATTAAGCTGGAATGGAGATGGAGATGTACGCCATCACCAAACAATAAGAATACAACAGCAGCTATATTGGACTTTCTCATGGATGCTAACATTAGATTAAGTGAAGAAGTTGTCAAAAAGACCGAGTCTTTTGAGCAGCTGAAAGAAGAAGCACATAAATGTTTGGTACAAAGCGAAAAGTTGAGCACCGAGAAAGATGAGTTTGAATCAGAAGTATATGCAAAGTTTGTGAACGTGCTGAACTCAAAGAAGGCAAAACTAAGGGAGCTTCGTGATCGTCTTTCAAAACAAGAAGCGAGAGGGAAGTTGCCAGAGGAAGAGGATGTTTCTGGTGACGAAACGGAACAATCTAAAAGTGAAACTGATGATGGTAGTGAAGAAACAACTGATTAAGAAACTTCGAAAGATGCTTCACCGAGTAAACCCCGTGCTAAAAAGAGGAATACACCACCTAGGAACTCTTGTTTGGCTGTCTGTTAATTCTAGAGCTTGTTTGACTGCAATGCTCTTTTAGGCTGGGTACTTAATCTCATTCTCATGTTTGGCCTTCTGCAAACTATGCTGCATTTCAACTCACCCTCCTAAAATTACGTGTCGGTTAAACTGTAATGTTTTAATTAAATATGGAGGGACTATCAGTTGTGGCAATGTAATCTACAGTGAAGATAAATTAGTGATGACGAATTCGATTGACTTGTATATGAGTGAACTTTTGATTTGGCAATCTTTGTATTTTATAAGTTAGAAATTACATGAGCTAGTTTGTTT

Coding sequence (CDS)

ATGGAATCCGAAACAGAAGCAAGACATTCATGCTTGAAACTCGAATTAACACAAGATTCTTCCAATCAAACAATATTCGTAAAGGGGACTTGGTTCCCTTCTCGTTTTTCTCTCTCCATCACCGATGGCTACGACTCTTGGCTATGCACTGCATCGGAGGAGGATGTGAGAGAGAGAGCAAGCCAGTGGGATCAATCTGTTTCGGAATACATTGAATTTGCAGAAAGGTATTTAGGGTTTCAACAGCCTGGTTCTGTTTATCGTTTTACTGATGCTGGAAATGGCCATAGAAGGCTGTCATGGACATTTGAGAAGGAAGGTATTAAGCTGGAATGGAGATGGAGATGTACGCCATCACCAAACAATAAGAATACAACAGCAGCTATATTGGACTTTCTCATGGATGCTAACATTAGATTAAGTGAAGAAGTTGTCAAAAAGACCGAGTCTTTTGAGCAGCTGAAAGAAGAAGCACATAAATGTTTGGTACAAAGCGAAAAGTTGAGCACCGAGAAAGATGAGTTTGAATCAGAAGTATATGCAAAGTTTGTGAACGTGCTGAACTCAAAGAAGGCAAAACTAAGGGAGCTTCGTGATCGTCTTTCAAAACAAGAAGCGAGAGGGAAGTTGCCAGAGGAAGAGGATGTTTCTGGTGACGAAACGGAACAATCTAAAAGTGAAACTGATGATGGTAGTGAAGAAACAACTGATTAA

Protein sequence

MESETEARHSCLKLELTQDSSNQTIFVKGTWFPSRFSLSITDGYDSWLCTASEEDVRERASQWDQSVSEYIEFAERYLGFQQPGSVYRFTDAGNGHRRLSWTFEKEGIKLEWRWRCTPSPNNKNTTAAILDFLMDANIRLSEEVVKKTESFEQLKEEAHKCLVQSEKLSTEKDEFESEVYAKFVNVLNSKKAKLRELRDRLSKQEARGKLPEEEDVSGDETEQSKSETDDGSEETTD
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo12710.1Spo12710.1mRNA


Homology
[Close]
BLAST of Spo12710.1 vs. NCBI nr
Match: gi|902217670|gb|KNA17856.1| (hypothetical protein SOVF_076750 [Spinacia oleracea])

HSP 1 Score: 461.8 bits (1187), Expect = 7.000e-127
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 1 

		  

Query: 1   MESETEARHSCLKLELTQDSSNQTIFVKGTWFPSRFSLSITDGYDSWLCTASEEDVRERA 60
           MESETEARHSCLKLELTQDSSNQTIFVKGTWFPSRFSLSITDGYDSWLCTASEEDVRERA
Sbjct: 1   MESETEARHSCLKLELTQDSSNQTIFVKGTWFPSRFSLSITDGYDSWLCTASEEDVRERA 60

Query: 61  SQWDQSVSEYIEFAERYLGFQQPGSVYRFTDAGNGHRRLSWTFEKEGIKLEWRWRCTPSP 120
           SQWDQSVSEYIEFAERYLGFQQPGSVYRFTDAGNGHRRLSWTFEKEGIKLEWRWRCTPSP
Sbjct: 61  SQWDQSVSEYIEFAERYLGFQQPGSVYRFTDAGNGHRRLSWTFEKEGIKLEWRWRCTPSP 120

Query: 121 NNKNTTAAILDFLMDANIRLSEEVVKKTESFEQLKEEAHKCLVQSEKLSTEKDEFESEVY 180
           NNKNTTAAILDFLMDANIRLSEEVVKKTESFEQLKEEAHKCLVQSEKLSTEKDEFESEVY
Sbjct: 121 NNKNTTAAILDFLMDANIRLSEEVVKKTESFEQLKEEAHKCLVQSEKLSTEKDEFESEVY 180

Query: 181 AKFVNVLNSKKAKLRELRDRLSKQEARGKLPEEEDVSGDETEQSKSETDDGSEETTD 238
           AKFVNVLNSKKAKLRELRDRLSKQEARGKLPEEEDVSGDETEQSKSETDDGSEETTD
Sbjct: 181 AKFVNVLNSKKAKLRELRDRLSKQEARGKLPEEEDVSGDETEQSKSETDDGSEETTD 237
[Close]
BLAST of Spo12710.1 vs. NCBI nr
Match: gi|731322839|ref|XP_010672115.1| (PREDICTED: DNA repair protein XRCC4-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 346.7 bits (888), Expect = 3.300e-92
Identity = 184/241 (76.35%), Postives = 212/241 (87.97%), Query Frame = 1 

		  

Query: 1   MESETEARHSCLKLELTQDS--SNQTIFVKGTWFPSRFSLSITDGYDSWLCTASEEDVRE 60
           MESE E+RH+CLKL++++DS  S Q IFVKG WFP +FSLSITDGYD+WLC ASEEDV+E
Sbjct: 1   MESE-ESRHTCLKLDVSEDSQSSKQIIFVKGNWFPCQFSLSITDGYDAWLCNASEEDVKE 60

Query: 61  RASQWDQSVSEYIEFAERYLGFQQPGSVYRFTDAGNGHRRLSWTFEKEGIKLEWRWRCTP 120
           RASQWDQSVSEYI FAE +LGFQ P SVYR TDAGNG++RLS+TFEKEGI+LEWRWRC P
Sbjct: 61  RASQWDQSVSEYIHFAETFLGFQHPTSVYRITDAGNGYKRLSFTFEKEGIQLEWRWRCKP 120

Query: 121 SPNNKNTTAAILDFLMDANIRLSEEVVKKTESFEQLKEEAHKCLVQSEKLSTEKDEFESE 180
           S ++K+ TA+ILDFLM+ANIRLSEEVVK T+SFEQLKEEA KCLVQSEKLST+++EFESE
Sbjct: 121 SSDSKSCTASILDFLMEANIRLSEEVVKTTQSFEQLKEEAQKCLVQSEKLSTQREEFESE 180

Query: 181 VYAKFVNVLNSKKAKLRELRDRLSKQEARGKLPEEEDVSGDETEQSKSETDD--GSEETT 238
           VYAKFV+VLNSKKAKLRELRDRLSKQEA GKLP+EE+VS D TE   S TDD   SE+ +
Sbjct: 181 VYAKFVSVLNSKKAKLRELRDRLSKQEANGKLPQEEEVSTDGTEPYHSRTDDDMNSEDKS 240
[Close]
BLAST of Spo12710.1 vs. NCBI nr
Match: gi|255551927|ref|XP_002517008.1| (PREDICTED: DNA repair protein XRCC4 isoform X1 [Ricinus communis])

HSP 1 Score: 312.0 bits (798), Expect = 9.000e-82
Identity = 162/233 (69.53%), Postives = 191/233 (81.97%), Query Frame = 1 

		  

Query: 2   ESETEARHSCLKLELTQDSSNQTIFVKGTWFPSRFSLSITDGYDSWLCTASEEDVRERAS 61
           E+ET ARH+CLKLE+T+      IFVKGTWF S F LSITDG ++W+C A+E  V+ERA+
Sbjct: 9   EAET-ARHTCLKLEITEP-----IFVKGTWFDSHFHLSITDGLNAWVCNATEGQVKERAA 68

Query: 62  QWDQSVSEYIEFAERYLGFQQPGSVYRFTDAGNGHRRLSWTFEKEGIKLEWRWRCTPSPN 121
           QWDQ VSEYI  AE YLGFQQPGS+YRF DAG+ H+RLSWTFEKEG KLEWRW+C PSP+
Sbjct: 69  QWDQPVSEYINLAEHYLGFQQPGSIYRFADAGDSHKRLSWTFEKEGTKLEWRWKCQPSPD 128

Query: 122 NKNTTAAILDFLMDANIRLSEEVVKKTESFEQLKEEAHKCLVQSEKLSTEKDEFESEVYA 181
           NK TTA ILDFLMDANIRLSEEVVKKT SFE+LKEEA KCL QSE+ + EK EFES +YA
Sbjct: 129 NKMTTAGILDFLMDANIRLSEEVVKKTHSFERLKEEADKCLTQSERFAGEKTEFESSIYA 188

Query: 182 KFVNVLNSKKAKLRELRDRLSKQEARGKLP-EEEDVSGDETEQSKSETDDGSE 234
           KF+ VLNSKK KLR+LRD+LSK+EA GKLP EEE+ S D+TE  + ++ DG +
Sbjct: 189 KFLAVLNSKKRKLRQLRDQLSKKEASGKLPQEEEEESTDKTESFEEDSSDGDK 235
[Close]
BLAST of Spo12710.1 vs. NCBI nr
Match: gi|657997560|ref|XP_008391163.1| (PREDICTED: DNA repair protein XRCC4 isoform X1 [Malus domestica])

HSP 1 Score: 311.6 bits (797), Expect = 1.200e-81
Identity = 159/234 (67.95%), Postives = 191/234 (81.62%), Query Frame = 1 

		  

Query: 1   MESETEARHSCLKLELTQDSSNQTIFVKGTWFPSRFSLSITDGYDSWLCTASEEDVRERA 60
           ME+ T  +H+CLKL+L +  S Q IFVKGTWFPSRF LSITDG ++W+C+ASE+ V +RA
Sbjct: 1   MEAPTP-KHTCLKLDLQE--SQQPIFVKGTWFPSRFELSITDGRNAWICSASEDQVSDRA 60

Query: 61  SQWDQSVSEYIEFAERYLGFQQPGSVYRFTDAGNGHRRLSWTFEKEGIKLEWRWRCTPSP 120
           +QWDQ VSEY+  AERYLGFQ P SVY F DAG+G++RLSWTFEKEG KLEWRW+C PSP
Sbjct: 61  AQWDQPVSEYVALAERYLGFQHPDSVYGFADAGDGYKRLSWTFEKEGTKLEWRWKCQPSP 120

Query: 121 NNKNTTAAILDFLMDANIRLSEEVVKKTESFEQLKEEAHKCLVQSEKLSTEKDEFESEVY 180
           N+K TTAA+LDFLMDAN+ LSEEVV+KT+SFE+LK EA KCL QSEK++ EK EFES +Y
Sbjct: 121 NSKQTTAAVLDFLMDANVGLSEEVVRKTQSFERLKVEAEKCLAQSEKITNEKIEFESAIY 180

Query: 181 AKFVNVLNSKKAKLRELRDRLSKQEARGKLPEEEDVSGDETEQSKSETDDGSEE 235
           AKF+ VLNSKKAKLRELRD+LS +E  GKLPEEE+ S ++TE   S  D   EE
Sbjct: 181 AKFLGVLNSKKAKLRELRDKLSNKEVAGKLPEEEEASSEQTEPYVSGDDKSEEE 231
[Close]
BLAST of Spo12710.1 vs. NCBI nr
Match: gi|645235752|ref|XP_008224414.1| (PREDICTED: DNA repair protein XRCC4-like isoform X1 [Prunus mume])

HSP 1 Score: 308.5 bits (789), Expect = 9.900e-81
Identity = 154/228 (67.54%), Postives = 187/228 (82.02%), Query Frame = 1 

		  

Query: 8   RHSCLKLELTQDSSNQTIFVKGTWFPSRFSLSITDGYDSWLCTASEEDVRERASQWDQSV 67
           +H+CLKL+L +  + Q I+VKGTWF SRF LSITDG ++W+C ASEE VR+RA+QWDQ V
Sbjct: 7   KHTCLKLQLKE--AQQPIYVKGTWFESRFDLSITDGLNAWICHASEEQVRDRAAQWDQPV 66

Query: 68  SEYIEFAERYLGFQQPGSVYRFTDAGNGHRRLSWTFEKEGIKLEWRWRCTPSPNNKNTTA 127
           SEY+  AERYLGFQ P S Y F DAG+GH+RLSWTFEKEG KLEWRW+C PSPN+K TTA
Sbjct: 67  SEYVALAERYLGFQHPDSAYGFADAGDGHKRLSWTFEKEGTKLEWRWKCQPSPNSKQTTA 126

Query: 128 AILDFLMDANIRLSEEVVKKTESFEQLKEEAHKCLVQSEKLSTEKDEFESEVYAKFVNVL 187
           A+LDFLMDAN+ LSEEVV+KT+SFE+LK EA KCL QSEKL+ EK EFES +YAKF+ VL
Sbjct: 127 AVLDFLMDANVGLSEEVVRKTQSFERLKVEAEKCLAQSEKLTNEKIEFESAIYAKFLGVL 186

Query: 188 NSKKAKLRELRDRLSKQEARGKLPEEEDVSGDETEQSKSETDDGSEET 236
           NSKKAKLRELRD++SKQ+  GK+PEEE+ S D+TE   S  +   +E+
Sbjct: 187 NSKKAKLRELRDKISKQDIAGKMPEEEEASSDQTEPFVSGDEKIEDES 232
[Close]
BLAST of Spo12710.1 vs. UniProtKB/TrEMBL
Match: A0A0K9REB9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_076750 PE=4 SV=1)

HSP 1 Score: 461.8 bits (1187), Expect = 4.900e-127
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 1 

		  

Query: 1   MESETEARHSCLKLELTQDSSNQTIFVKGTWFPSRFSLSITDGYDSWLCTASEEDVRERA 60
           MESETEARHSCLKLELTQDSSNQTIFVKGTWFPSRFSLSITDGYDSWLCTASEEDVRERA
Sbjct: 1   MESETEARHSCLKLELTQDSSNQTIFVKGTWFPSRFSLSITDGYDSWLCTASEEDVRERA 60

Query: 61  SQWDQSVSEYIEFAERYLGFQQPGSVYRFTDAGNGHRRLSWTFEKEGIKLEWRWRCTPSP 120
           SQWDQSVSEYIEFAERYLGFQQPGSVYRFTDAGNGHRRLSWTFEKEGIKLEWRWRCTPSP
Sbjct: 61  SQWDQSVSEYIEFAERYLGFQQPGSVYRFTDAGNGHRRLSWTFEKEGIKLEWRWRCTPSP 120

Query: 121 NNKNTTAAILDFLMDANIRLSEEVVKKTESFEQLKEEAHKCLVQSEKLSTEKDEFESEVY 180
           NNKNTTAAILDFLMDANIRLSEEVVKKTESFEQLKEEAHKCLVQSEKLSTEKDEFESEVY
Sbjct: 121 NNKNTTAAILDFLMDANIRLSEEVVKKTESFEQLKEEAHKCLVQSEKLSTEKDEFESEVY 180

Query: 181 AKFVNVLNSKKAKLRELRDRLSKQEARGKLPEEEDVSGDETEQSKSETDDGSEETTD 238
           AKFVNVLNSKKAKLRELRDRLSKQEARGKLPEEEDVSGDETEQSKSETDDGSEETTD
Sbjct: 181 AKFVNVLNSKKAKLRELRDRLSKQEARGKLPEEEDVSGDETEQSKSETDDGSEETTD 237
[Close]
BLAST of Spo12710.1 vs. UniProtKB/TrEMBL
Match: B9RTD9_RICCO (DNA-repair protein XRCC4, putative OS=Ricinus communis GN=RCOM_0908820 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 6.200e-82
Identity = 162/233 (69.53%), Postives = 191/233 (81.97%), Query Frame = 1 

		  

Query: 2   ESETEARHSCLKLELTQDSSNQTIFVKGTWFPSRFSLSITDGYDSWLCTASEEDVRERAS 61
           E+ET ARH+CLKLE+T+      IFVKGTWF S F LSITDG ++W+C A+E  V+ERA+
Sbjct: 9   EAET-ARHTCLKLEITEP-----IFVKGTWFDSHFHLSITDGLNAWVCNATEGQVKERAA 68

Query: 62  QWDQSVSEYIEFAERYLGFQQPGSVYRFTDAGNGHRRLSWTFEKEGIKLEWRWRCTPSPN 121
           QWDQ VSEYI  AE YLGFQQPGS+YRF DAG+ H+RLSWTFEKEG KLEWRW+C PSP+
Sbjct: 69  QWDQPVSEYINLAEHYLGFQQPGSIYRFADAGDSHKRLSWTFEKEGTKLEWRWKCQPSPD 128

Query: 122 NKNTTAAILDFLMDANIRLSEEVVKKTESFEQLKEEAHKCLVQSEKLSTEKDEFESEVYA 181
           NK TTA ILDFLMDANIRLSEEVVKKT SFE+LKEEA KCL QSE+ + EK EFES +YA
Sbjct: 129 NKMTTAGILDFLMDANIRLSEEVVKKTHSFERLKEEADKCLTQSERFAGEKTEFESSIYA 188

Query: 182 KFVNVLNSKKAKLRELRDRLSKQEARGKLP-EEEDVSGDETEQSKSETDDGSE 234
           KF+ VLNSKK KLR+LRD+LSK+EA GKLP EEE+ S D+TE  + ++ DG +
Sbjct: 189 KFLAVLNSKKRKLRQLRDQLSKKEASGKLPQEEEEESTDKTESFEEDSSDGDK 235
[Close]
BLAST of Spo12710.1 vs. UniProtKB/TrEMBL
Match: A0A067KSL8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11186 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 1.500e-80
Identity = 155/227 (68.28%), Postives = 190/227 (83.70%), Query Frame = 1 

		  

Query: 7   ARHSCLKLELTQDSSNQTIFVKGTWFPSRFSLSITDGYDSWLCTASEEDVRERASQWDQS 66
           ARH+CLKLE + D + + IFVKGTWF + F+LSITDG ++W+C A+EEDV+ERA+QWDQ 
Sbjct: 9   ARHTCLKLEHSADMA-EPIFVKGTWFDTHFNLSITDGLNAWVCHATEEDVKERAAQWDQP 68

Query: 67  VSEYIEFAERYLGFQQPGSVYRFTDAGNGHRRLSWTFEKEGIKLEWRWRCTPSPNNKNTT 126
           V+EY+  AE+YLGFQQPGSVYRF DAG+GH+RLSWTFEKEG +LEWRW+C PSP+ K TT
Sbjct: 69  VTEYVHLAEQYLGFQQPGSVYRFADAGDGHKRLSWTFEKEGTRLEWRWKCKPSPDCKRTT 128

Query: 127 AAILDFLMDANIRLSEEVVKKTESFEQLKEEAHKCLVQSEKLSTEKDEFESEVYAKFVNV 186
           A ILDFL+DANIRLSEEVV KT SFE++KEEA KCL QSEK ++EK EFES +YAKFV V
Sbjct: 129 AGILDFLIDANIRLSEEVVSKTRSFERMKEEAEKCLAQSEKFNSEKMEFESAIYAKFVGV 188

Query: 187 LNSKKAKLRELRDRLSKQEARGKLPEEEDVSGDETEQSKSETDDGSE 234
           LNSKK KLR LRD+LSK+E+ GKLP+EE+ S D+T+      D+GS+
Sbjct: 189 LNSKKQKLRGLRDQLSKKESSGKLPKEEEESTDKTD----SFDEGSD 230
[Close]
BLAST of Spo12710.1 vs. UniProtKB/TrEMBL
Match: D7T7A5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g04910 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 5.800e-80
Identity = 156/231 (67.53%), Postives = 188/231 (81.39%), Query Frame = 1 

		  

Query: 4   ETEARHSCLKLELTQDSSNQTIFVKGTWFPSRFSLSITDGYDSWLCTASEEDVRERASQW 63
           E   RHSCLKL++   S  + IF+K TWFPS F LSITDG  +WLC ASE++VRERA+QW
Sbjct: 2   EPTPRHSCLKLQIPNQS--EPIFIKATWFPSHFHLSITDGLHAWLCNASEDEVRERAAQW 61

Query: 64  DQSVSEYIEFAERYLGFQQPGSVYRFTDAGNGHRRLSWTFEKEGIKLEWRWRCTPSPNNK 123
           DQ VS+YI  AER+LGFQQPGSVY F+DAG+GHRRLSWTFEKEG KLEWRW+C  SP+++
Sbjct: 62  DQPVSDYIALAERFLGFQQPGSVYGFSDAGDGHRRLSWTFEKEGTKLEWRWKCGLSPDSR 121

Query: 124 NTTAAILDFLMDANIRLSEEVVKKTESFEQLKEEAHKCLVQSEKLSTEKDEFESEVYAKF 183
           +TTA +LDFLM+ANIRLSEEVV KT+SFE+LK EA KCL QSEK + EK EFES +YAKF
Sbjct: 122 STTAGVLDFLMNANIRLSEEVVIKTQSFERLKVEAEKCLAQSEKFNNEKAEFESAIYAKF 181

Query: 184 VNVLNSKKAKLRELRDRLSKQEARGKLPEEEDVSGDETEQSKSETDDGSEE 235
           + VLNSKKAKLRELRD++SK+E  GKLP+EED S D+T     E+D+ + E
Sbjct: 182 LGVLNSKKAKLRELRDQISKEETTGKLPQEEDESTDKTLSFDDESDNEAIE 230
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BLAST of Spo12710.1 vs. UniProtKB/TrEMBL
Match: A0A059B477_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H03153 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.300e-79
Identity = 158/236 (66.95%), Postives = 187/236 (79.24%), Query Frame = 1 

		  

Query: 8   RHSCLKLEL---TQDSSNQTIFVKGTWFPSRFSLSITDGYDSWLCTASEEDVRERASQWD 67
           RHSCLKL L    +    + IFVK TWF +RF LSITDG D+W+C ASEE+V ERA+QWD
Sbjct: 5   RHSCLKLVLPNPNEPKKTEPIFVKATWFDTRFDLSITDGLDAWVCQASEEEVIERAAQWD 64

Query: 68  QSVSEYIEFAERYLGFQQPGSVYRFTDAGNGHRRLSWTFEKEGIKLEWRWRCTPSPNNKN 127
           Q VSEYIE AERYLGFQQPGSVY+FTDAG+G+RRLSWTFEKEG KLEWRW+C PSP+ K+
Sbjct: 65  QPVSEYIELAERYLGFQQPGSVYKFTDAGDGNRRLSWTFEKEGTKLEWRWKCRPSPDRKS 124

Query: 128 TTAAILDFLMDANIRLSEEVVKKTESFEQLKEEAHKCLVQSEKLSTEKDEFESEVYAKFV 187
            T+ ILDFLMDANIRLSEEVV KT+SF++LK EA KCL QSEK + EK EFES +YAKF+
Sbjct: 125 ATSGILDFLMDANIRLSEEVVSKTKSFDRLKVEAEKCLAQSEKFNNEKMEFESAIYAKFL 184

Query: 188 NVLNSKKAKLRELRDRLSKQEARGKLPEEEDVSGDETEQSKSETDD---GSEETTD 238
            VLN+KKAKLRELRD+L+KQ+A GK  +E++ S ++TE    E  D     EET D
Sbjct: 185 GVLNTKKAKLRELRDQLAKQDAAGKFAQEDEESAEKTETFDDEMSDDAESKEETAD 240
[Close]
BLAST of Spo12710.1 vs. ExPASy Swiss-Prot
Match: XRCC4_ARATH (DNA repair protein XRCC4 OS=Arabidopsis thaliana GN=XRCC4 PE=1 SV=2)

HSP 1 Score: 259.6 bits (662), Expect = 3.300e-68
Identity = 139/234 (59.40%), Postives = 174/234 (74.36%), Query Frame = 1 

		  

Query: 1   MESETEARHSCLKLELTQDSSNQTIFVKGTWFPSRFSLSITDGYDSWLCTASEEDVRERA 60
           +ESE + +H+CL+LE+   S    IFVKGTW  SRF +S+TDG  SW+C A+EE+V ERA
Sbjct: 18  VESE-KTKHTCLRLEI---SGADPIFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERA 77

Query: 61  SQWDQSVSEYIEFAERYLGFQQPGSVYRFTDAGNGHRRLSWTFEKEGIKLEWRWRCTPSP 120
           +QWDQ VSEY++ AE+YLGFQQP SVY F+DA  G +RLSWTFEKEG KLEWRW+C PS 
Sbjct: 78  AQWDQPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSD 137

Query: 121 NNKNTTAAILDFLMDANIRLSEEVVKKTESFEQLKEEAHKCLVQSEKLSTEKDEFESEVY 180
           ++K  T  ILDFLM+ANIRLSEEVV KT SFE+++ EA +CL Q EKL  EK EFES  Y
Sbjct: 138 DSKKITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATY 197

Query: 181 AKFVNVLNSKKAKLRELRDRLSKQEARGKLPEEEDVSGDETEQSKSETDDGSEE 235
           AKF++VLN+KKAKLR LRD   K+++   + EEE     E+ +S    D+ SEE
Sbjct: 198 AKFLSVLNAKKAKLRALRD---KEDSVRVVEEEESTDKAESFESGRSDDEKSEE 244
[Close]
BLAST of Spo12710.1 vs. TAIR (Arabidopsis)
Match: AT3G23100.1 (homolog of human DNA ligase iv-binding protein XRCC4)

HSP 1 Score: 259.6 bits (662), Expect = 1.900e-69
Identity = 139/234 (59.40%), Postives = 174/234 (74.36%), Query Frame = 1 

		  

Query: 1   MESETEARHSCLKLELTQDSSNQTIFVKGTWFPSRFSLSITDGYDSWLCTASEEDVRERA 60
           +ESE + +H+CL+LE+   S    IFVKGTW  SRF +S+TDG  SW+C A+EE+V ERA
Sbjct: 18  VESE-KTKHTCLRLEI---SGADPIFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERA 77

Query: 61  SQWDQSVSEYIEFAERYLGFQQPGSVYRFTDAGNGHRRLSWTFEKEGIKLEWRWRCTPSP 120
           +QWDQ VSEY++ AE+YLGFQQP SVY F+DA  G +RLSWTFEKEG KLEWRW+C PS 
Sbjct: 78  AQWDQPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSD 137

Query: 121 NNKNTTAAILDFLMDANIRLSEEVVKKTESFEQLKEEAHKCLVQSEKLSTEKDEFESEVY 180
           ++K  T  ILDFLM+ANIRLSEEVV KT SFE+++ EA +CL Q EKL  EK EFES  Y
Sbjct: 138 DSKKITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATY 197

Query: 181 AKFVNVLNSKKAKLRELRDRLSKQEARGKLPEEEDVSGDETEQSKSETDDGSEE 235
           AKF++VLN+KKAKLR LRD   K+++   + EEE     E+ +S    D+ SEE
Sbjct: 198 AKFLSVLNAKKAKLRALRD---KEDSVRVVEEEESTDKAESFESGRSDDEKSEE 244
[Close]
BLAST of Spo12710.1 vs. TAIR (Arabidopsis)
Match: AT1G61410.1 (DNA double-strand break repair and VJ recombination XRCC4)

HSP 1 Score: 83.6 bits (205), Expect = 1.800e-16
Identity = 52/104 (50.00%), Postives = 69/104 (66.35%), Query Frame = 1 

		  

Query: 134 MDANIRLSEEVVKKTESFEQLKEEAHKCLVQSEKLSTEKDEFESEVYAKFVNVLNSKKAK 193
           M+ANIRLSEEVV KT SFE++K EA +CL Q EKL  EK EFE+  YAKF++VLN+KKAK
Sbjct: 1   MEANIRLSEEVVNKTRSFEKMKSEAERCLAQGEKLCDEKTEFENATYAKFLSVLNAKKAK 60

Query: 194 LRELRDRLSKQEARGKLPEEEDVSGDETEQSKSETDDGSEETTD 238
           LR +RD+  +   R    EE     +  E  +S+ +   EE ++
Sbjct: 61  LRAVRDK--EDSVRAVEEEESTYKAESFESGRSDDEQSGEEASE 102
The following BLAST results are available for this feature:
BLAST of Spo12710.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902217670|gb|KNA17856.1|7.0e-127100.hypothetical protein SOVF_0767... [more]
gi|731322839|ref|XP_010672115.1|3.3e-9276.3PREDICTED: DNA repair protein ... [more]
gi|255551927|ref|XP_002517008.1|9.0e-8269.5PREDICTED: DNA repair protein ... [more]
gi|657997560|ref|XP_008391163.1|1.2e-8167.9PREDICTED: DNA repair protein ... [more]
gi|645235752|ref|XP_008224414.1|9.9e-8167.5PREDICTED: DNA repair protein ... [more]
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BLAST of Spo12710.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9REB9_SPIOL4.9e-127100.Uncharacterized protein OS=Spi... [more]
B9RTD9_RICCO6.2e-8269.5DNA-repair protein XRCC4, puta... [more]
A0A067KSL8_JATCU1.5e-8068.2Uncharacterized protein OS=Jat... [more]
D7T7A5_VITVI5.8e-8067.5Putative uncharacterized prote... [more]
A0A059B477_EUCGR1.3e-7966.9Uncharacterized protein OS=Euc... [more]
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BLAST of Spo12710.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
XRCC4_ARATH3.3e-6859.4DNA repair protein XRCC4 OS=Ar... [more]
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BLAST of Spo12710.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT3G23100.11.9e-6959.4homolog of human DNA ligase iv... [more]
AT1G61410.11.8e-1650.0DNA double-strand break repair... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009089DNA double-strand break repair and VJ recombination XRCC4, N-terminalGENE3D2.170.210.10coord: 13..91
score: 4.
IPR010585DNA repair protein XRCC4PFAMPF06632XRCC4coord: 34..236
score: 1.1
IPR014751DNA repair protein XRCC4, C-terminalGENE3D1.20.5.370coord: 125..212
score: 9.8
NoneNo IPR availableunknownCoilCoilcoord: 184..207
score: -coord: 137..157
scor
NoneNo IPR availablePANTHERPTHR28559FAMILY NOT NAMEDcoord: 1..237
score: 3.9
NoneNo IPR availableunknownSSF58022XRCC4, C-terminal oligomerization domaincoord: 122..209
score: 7.19

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0006370 7-methylguanosine mRNA capping
biological_process GO:0044238 primary metabolic process
biological_process GO:0050794 regulation of cellular process
biological_process GO:0050793 regulation of developmental process
biological_process GO:0006302 double-strand break repair
biological_process GO:0048731 system development
biological_process GO:0006810 transport
biological_process GO:0006266 DNA ligation
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0006281 DNA repair
biological_process GO:0006260 DNA replication
biological_process GO:0035335 peptidyl-tyrosine dephosphorylation
biological_process GO:0098507 polynucleotide 5' dephosphorylation
biological_process GO:0006570 tyrosine metabolic process
biological_process GO:0008152 metabolic process
biological_process GO:0071702 organic substance transport
biological_process GO:0050896 response to stimulus
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0009987 cellular process
biological_process GO:0010467 gene expression
biological_process GO:0044237 cellular metabolic process
biological_process GO:0051301 cell division
biological_process GO:0007094 mitotic spindle assembly checkpoint
biological_process GO:0009630 gravitropism
biological_process GO:0033036 macromolecule localization
cellular_component GO:0005634 nucleus
cellular_component GO:0000785 chromatin
cellular_component GO:0005635 nuclear envelope
cellular_component GO:0005643 nuclear pore
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0044444 cytoplasmic part
molecular_function GO:0008138 protein tyrosine/serine/threonine phosphatase activity
molecular_function GO:0005488 binding
molecular_function GO:0004651 polynucleotide 5'-phosphatase activity
molecular_function GO:0004725 protein tyrosine phosphatase activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0004484 mRNA guanylyltransferase activity
molecular_function GO:0003910 DNA ligase (ATP) activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003682 chromatin binding
molecular_function GO:0008270 zinc ion binding
RNA-Seq Expression