Spo12743 (gene)

Overview
NameSpo12743
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionDNA-directed RNA polymerase III protein
Locationchr3 : 822982 .. 828174 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAAAATCTAACCTCTCCCAAAACCCTGTTCTCCATTATCTTTCTCTTTCCTCCACACAGAAAAGGATGTTCTACTTAAGCTTAATAGAGCACAGATTAAGATTACCACCCAAATTACTCGATCTCCGTTTAGAAGATGCAATAAAGGGTCAGCTTGAATCCATCTTCTTAGACAAGGTTTGATATATCTCTTCTTCCTTTTTTTGTTTAATGGGGTTTTGATTTTAAGCTCAAATAATTTGAAATTATAATGATTGGTGAAGGTAATTGCGAAAGCGGGTCTTTGTATATCAGTTTACGATATCAAATCAATTGATGGCGGTTTTGTCTTGCCTGTTGAAGGCGCTCCAACTTATACGGTTCGTCTAATTTCTCTCTTTTAATTTGTATTTAATTGTTGATTTATTTTCAACATTTGGTGATTTCTAGCTGAATTGGAAGGAAGATTTATCTGGGTGCTGGGAAATTAGGTGAACTGAATCTTTTTTGTTGAGTAATTCTCAAAATTTGGTGATTTCTAGCTGAATTTGAAGGAGAATTTATATGGGTACTGGGAAATTTAGCTGAATTGAATTGTCCAGAAATATTTAGCTCAACATTATGATTATTACTTGTCTAATGAATTTAGTGATTTTTCATTTTTGGTTGAATAATTGGCAAAGTTTCTTCTAGCTGAATTAGAAGGGAAATTTATCTGGTTACTGGTAAATTAGCTGAATTGGATTTCCCAGAAATGTCATTTAGTTCAACATTGTGATTATTACTTGTCTAATTATGTGACTGTCTTATTGGGAATTAAATGAGATAATTTGAGGCTTTGTTTATGTCAAAATTGATGTGGGGAAGTGACTAAGGAAGTGCTTGGCAGTGTGATGCAAATGCACCTTAATGATTCTTGTGTCCGATGGTTGTACAAAAGGGTTCGAGGTTATGCTTAAGAAGGTATTGGAGACTTGTATTCTTTCACGGGTTAGCGTAAATTGGTTATTTCGCGAACTGCAAAAGAGTCTATGATTTGGTGTACGAGAGATGTGTAGTTTCTTGAATTTGGATATGACAGGGTGCTTTGAAGATGACAATGGATATTGTGTCCAAGAGGTTTTGGAAGATGGTGATGGTGTGAATTGTGAGGTTTTATTCTCTGAAATTGAAGAGGGTGTGTCGCCTTGTAGTAATCCGATAGACAATTTGGAGGTAGCTTGATAAATTCGGGTGCTGCATAATTGTAGCATATTTGGTTAATATTTGGCTTAAAATGACGAATCTTGAAAGAGTTAGTAGATTTTTATAGTAGTATCAGCTACTAAGGGTGCAAAATGAGAAATCGTACCTTCACATAGTCATATGGCATGTAATTGGGTGGATGATGTGATAGCAATAAAACCGTGAATGAGAACGTTGCGTGAAAAAAAAACAGGGTAATTTTCAAATAATTTGAGATGCCAATGGTCTTCCATGTCCTTGTGAAAAGTTGTTCTATCCTATCCTCATTAATATGCTTATGCATTATCTGTTTTTTCTTCATCTTATTCTTTATGAATGAGCCCTTCTCTTAAAGTTTTAGTTTAAGTGCACTTTTTTTCGAGGGTGGTGGTGGTGGTGGTTAGGGCCAGAGAAGAAGATATCTGTTCCTCTTTCTTCTTTTTTGGTTGCTTTTTCCCTCTTATAGAACTCAACTAGGTCTTCAGTCCATGTATAGAAGCTTGCTGGATGCATTCTTGTAAATAAGATAAAACATTATCCGAAGGACGAATTATGGTTCTGTACAGGATAAATCGGGAGTTAATTCTTAACAATACTACTCATAATATTCTATTATTTTCACTACCTTGAATCATGCATCTTCTGATATGCAGGTGGTTTTCCGTATGGTTATGTTCCGGCCGTATATTGGAGAAATTATTACCACAAAACTTAAGAATTCAAACTTAAAAGGATTACAGTGTATGTCTTTTCTTCTTCTTTTTCTCATGTAGATGAGAGTGTGTTTTTACATCATTCATTTGGTAGTTTCATTATTTTATATAAAATATTTGCCGAGTCTTTATATTTTAATTTCTTTGGCATTAAAATTGCTTCTTAATTTTGTACCTATGATATGCAGTGACACTTGGGTTTTTTGACGACATATACGTACCTTCTTATGCTCTGCCAGAACCATCACATATGGAGCCCGAGCCCAATGATGTTGATCCGTAAGATCAATTTATCTATACTTGTCCCTTTCCACACCTACTTACTCTGTTCCATTATGTTCCTCATGTTTAATATTGGTCAAAGGTCAAAGTTTTAAAAATTTGACCATGAATAGTAGTATACATAACGGAAAAAATATGAACTTGTGAGATCTCATTGAATTTCTTGCAACGTGATTTTCTAAATATCAATTTTTTATAACTTTTACTAATCCGAAATTAACATTATTAATGGTCAAAGTAGTGCATTAGAGACCGTACATAAGGGAAAAGTGAGGAACATTATGAAACGGACGGAGTATAGTTTAAAGAAACTAATTCAAATGAATATTTCTCCCTTTAGTTACGTAACTCTTTCTGTGAAACTGCAGCAAGCATGGGAGATGGGTGTGGAGATACAATGAAATGGATTTACCCATTGATGATGATAGTGAGGTCAGTAACTCAGTATGCCCTCTTGAGTTTGATTTTGTGCAAAGATGGCTGTGGGCTGGGTCTGGCTTCGGGCTGAGCCCACGGGCCATGCCCTAAACGGGCCAGCCCACACCAAGCCCACTCTACCTCGTGCGGTCGTGCCAGGCCAAAAAGTTCAAATTTGACCACCCTTCCTTGTGCTGGGCCTCGGGCCGGCCCACAACCAGCTTTAATTTTGTGGTTCTTGTCACTTTTATTATTCTTCTTTGTCACAGGCTAGTTTGTTTCATTACCTGCAGATACGGTTTCAAGTTATTAGTGTTGACTACCCTCCAATCCCGTTAGAACAAGAGGAAGGTTCAAAGCCATTTGCTCCAATGGTTATTACCGTGAGTTCTCTCCTCCGTTTTAATTTTATTAGTGTAACAGATAGTGAGTTTTTCCCAATAAGAGAACGGAACAACACATTATCATCACTGACATATTATTATTGGCTGTTGGCTACTAGTTTTACCCCAATAAAGTTGGCTGTTGGCTTACTAGTTATTTCATAAAAATGTAATTACCAAAATGAAAAGCCAATTGCCAATGTAAAAAGCTACTCTTATTAGCTTTTGAGTTTTGGCGGAAAAGCCGGCTTTTTAGCCAAGGAAAACACCATTTAACAAACATGTATAATTGGTTGTTTGACTACGTATAAAATGCCAAAAGCCAATGAAAAAGCCAGCAAAAAGCCAGTTACCAATCAGGCCCATTATCATAGGTGACATATTATCATACTCTATACTCCATAATAGTCGACATATCATCCGTAAAAATCAGCAAATGCAAATGACAAAAACCATAGTTAATCAGCAAAAAATGATTTAAAACAATAAACTCAATTTTGGTCAGATTGAAATTTTTGTTTTAATCAACAAAACTATTCGCAAATAGTTTGGTTCACTAACGTGAATAGAACAAGGTCTTTCTTTTATTTGTTTGCTTTATGCTGCTGTTATTTATGTTCCCGTTTTCTTCACTGCATATTATTATACTCCGTACTCCATAGTACTCGTCTACTCGACATATTATCAGTAAAATTCACCAAAGCAAATGACAAAAACCACCATTAATCAGCAAAATTTGATTCAAACAATAAAATTCAGTTTTTATCAGATCGAATTGTTTGTTTTAATCAACAAAACTAATCGTAATTAGTTAGGTTCTCTAAGGTGAATATAACAAGATTGCTGTTATTTATGTTCCCGTTTTCTTGTTGGACAAACTGCTGTATAATTTGTTGATTCATTCCTCTGTTAGGGATCTGTTAACTCTGATGGCTTAGGTCCCCTTGCATGGTGGTGAGCTCATGAAGCGTCTCAAAGCAATAATCACGACGAAGCTGCTCAACTTAAGGTTTCTTTCGTGCAACGCTCGAACTTGGTTTTACTAACTAGCTTTTTTTCTTGACATATATGATCATAACTAGCCTTTACTAACGTCTAGTGCAATACAAGAGAAATGAATGACAACTTTGTACTATAATATTTTGTCACAGACCATGATTCTTAACCCAATTTTGCCCATCAAACCATCATGACTGTCCCCCCCCCCCCCCNCCCCCCCCCCTTTTTATTCTATATAGTGTATCAGTATAGTCTTCCCATTGTCGTCTCGTTTTCGCTTTTGCGTACACCCGACCCCCCTTACCGGCTTACCCCGCTTCTTGCGGGAGCTTCTTTGAGGCAATGGGTAATGATAATGATAATGATATAGTGTATCAGTATAATTATTTTTTGGTGTAGAGAGAGCCATAAAGGGTGGAGAGCAGACGGGATTCGATCCTTGATCTTGGATACCACTCCTATGAGACCTTACCAACTAAGCTAGCTGACATCTACGAGTGCCTCTGTGTTATATGACTTGGCATGTTTATGGATGGAATTTTGCGTAGGGTTTCAAGTACGGAGTACTCGGAATATTGCATACGAATCTTATTCCGGACTTTGGAACGGTTAAGATAGCATAAATTGATATCGGAAGGAATCAACTAAGCTAGCTGACATTTACGAGTGCCTCTGCGTTATATGACTTGGCATGTTTATGGATGGAATTTTGACTAGGGTTTCAAGTACAGAGTACTCCGAATATTGCATACGAAGTGTTTTTCTGGTAAAATCACGTCTTATTCCGGACTTTTGAACGGTTAAGATAACGTAAGTTGATATCGGAAGGAGGTACGTACTACTTAGTACTATATTGTAAACATTGAAACGTTTAGAAACGGATGGAGTATTTGATAACTAGAGATGGTTTTCGTCTTTCGACACTCGTATGTATGAATGAAACGACTCATCTATGTTATTATAATTACTTGGCTTAGATTTCGATTAAGAATTTGATTAACAATTCAATTAAATAATAGGGAGTTTATACTATAAGAGCTGGAGGTTGAAGGAAACCAGCATTGGTGAAATGAATGAGAATGGACATGGCACATGATTCAAGCTGTTTGTCTTGGATTCCTTCTTAAACATTAATTGCATTCTTACTCTACAAATTATGCATGTAAACTTGGCTAAATTTTAGCTGAAACACCCTT

mRNA sequence

TCAAAATCTAACCTCTCCCAAAACCCTGTTCTCCATTATCTTTCTCTTTCCTCCACACAGAAAAGGATGTTCTACTTAAGCTTAATAGAGCACAGATTAAGATTACCACCCAAATTACTCGATCTCCGTTTAGAAGATGCAATAAAGGGTCAGCTTGAATCCATCTTCTTAGACAAGGTAATTGCGAAAGCGGGTCTTTGTATATCAGTTTACGATATCAAATCAATTGATGGCGGTTTTGTCTTGCCTGTTGAAGGCGCTCCAACTTATACGGTGGTTTTCCGTATGGTTATGTTCCGGCCGTATATTGGAGAAATTATTACCACAAAACTTAAGAATTCAAACTTAAAAGGATTACAGTTGACACTTGGGTTTTTTGACGACATATACGTACCTTCTTATGCTCTGCCAGAACCATCACATATGGAGCCCGAGCCCAATGATGTTGATCCCAAGCATGGGAGATGGGTGTGGAGATACAATGAAATGGATTTACCCATTGATGATGATAGTGAGATACGGTTTCAAGTTATTAGTGTTGACTACCCTCCAATCCCGTTAGAACAAGAGGAAGGTTCAAAGCCATTTGCTCCAATGGTTATTACCGGATCTGTTAACTCTGATGGCTTAGGTCCCCTTGCATGGTGGTGAGCTCATGAAGCGTCTCAAAGCAATAATCACGACGAAGCTGCTCAACTTAAGGGAGTTTATACTATAAGAGCTGGAGGTTGAAGGAAACCAGCATTGGTGAAATGAATGAGAATGGACATGGCACATGATTCAAGCTGTTTGTCTTGGATTCCTTCTTAAACATTAATTGCATTCTTACTCTACAAATTATGCATGTAAACTTGGCTAAATTTTAGCTGAAACACCCTT

Coding sequence (CDS)

ATGTTCTACTTAAGCTTAATAGAGCACAGATTAAGATTACCACCCAAATTACTCGATCTCCGTTTAGAAGATGCAATAAAGGGTCAGCTTGAATCCATCTTCTTAGACAAGGTAATTGCGAAAGCGGGTCTTTGTATATCAGTTTACGATATCAAATCAATTGATGGCGGTTTTGTCTTGCCTGTTGAAGGCGCTCCAACTTATACGGTGGTTTTCCGTATGGTTATGTTCCGGCCGTATATTGGAGAAATTATTACCACAAAACTTAAGAATTCAAACTTAAAAGGATTACAGTTGACACTTGGGTTTTTTGACGACATATACGTACCTTCTTATGCTCTGCCAGAACCATCACATATGGAGCCCGAGCCCAATGATGTTGATCCCAAGCATGGGAGATGGGTGTGGAGATACAATGAAATGGATTTACCCATTGATGATGATAGTGAGATACGGTTTCAAGTTATTAGTGTTGACTACCCTCCAATCCCGTTAGAACAAGAGGAAGGTTCAAAGCCATTTGCTCCAATGGTTATTACCGGATCTGTTAACTCTGATGGCTTAGGTCCCCTTGCATGGTGGTGA

Protein sequence

MFYLSLIEHRLRLPPKLLDLRLEDAIKGQLESIFLDKVIAKAGLCISVYDIKSIDGGFVLPVEGAPTYTVVFRMVMFRPYIGEIITTKLKNSNLKGLQLTLGFFDDIYVPSYALPEPSHMEPEPNDVDPKHGRWVWRYNEMDLPIDDDSEIRFQVISVDYPPIPLEQEEGSKPFAPMVITGSVNSDGLGPLAWW
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo12743.1Spo12743.1mRNA


Homology
[Close]
BLAST of Spo12743.1 vs. NCBI nr
Match: gi|902186606|gb|KNA10726.1| (hypothetical protein SOVF_141600 [Spinacia oleracea])

HSP 1 Score: 399.8 bits (1026), Expect = 2.700e-108
Identity = 192/194 (98.97%), Postives = 194/194 (100.00%), Query Frame = 1 

		  

Query: 1   MFYLSLIEHRLRLPPKLLDLRLEDAIKGQLESIFLDKVIAKAGLCISVYDIKSIDGGFVL 60
           MFYLSLIEHRLRLPPKLLDLRLEDAIKGQLESIFLDKVIAKAGLCISVYDIKSIDGGFVL
Sbjct: 1   MFYLSLIEHRLRLPPKLLDLRLEDAIKGQLESIFLDKVIAKAGLCISVYDIKSIDGGFVL 60

Query: 61  PVEGAPTYTVVFRMVMFRPYIGEIITTKLKNSNLKGLQLTLGFFDDIYVPSYALPEPSHM 120
           PVEGAPTYTVVFRMVMFRPYIGEIITTKLKNSNLKGLQLTLGFFDDIYVPSYALPEPSHM
Sbjct: 61  PVEGAPTYTVVFRMVMFRPYIGEIITTKLKNSNLKGLQLTLGFFDDIYVPSYALPEPSHM 120

Query: 121 EPEPNDVDPKHGRWVWRYNEMDLPIDDDSEIRFQVISVDYPPIPLEQEEGSKPFAPMVIT 180
           EPEPND+DPKHGRWVWRYNEMDLPIDDDSEIRFQVISVDYPPIPLEQEEG+KPFAPMVIT
Sbjct: 121 EPEPNDIDPKHGRWVWRYNEMDLPIDDDSEIRFQVISVDYPPIPLEQEEGAKPFAPMVIT 180

Query: 181 GSVNSDGLGPLAWW 195
           GSVNSDGLGPLAWW
Sbjct: 181 GSVNSDGLGPLAWW 194
[Close]
BLAST of Spo12743.1 vs. NCBI nr
Match: gi|731322659|ref|XP_010672015.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 318.2 bits (814), Expect = 1.000e-83
Identity = 148/194 (76.29%), Postives = 173/194 (89.18%), Query Frame = 1 

		  

Query: 1   MFYLSLIEHRLRLPPKLLDLRLEDAIKGQLESIFLDKVIAKAGLCISVYDIKSIDGGFVL 60
           MF+LS +EHRLRLPP LL+L LED+IKGQL+SIFLDKVIAK GLC+S+YDIKSI+GGFVL
Sbjct: 1   MFFLSQLEHRLRLPPHLLNLPLEDSIKGQLQSIFLDKVIAKLGLCVSIYDIKSINGGFVL 60

Query: 61  PVEGAPTYTVVFRMVMFRPYIGEIITTKLKNSNLKGLQLTLGFFDDIYVPSYALPEPSHM 120
           PVEGAPTYTVVFRM+MFRPY+GE+I  KLK+SN KGLQL+LGFFDD+YVP YALP PSH 
Sbjct: 61  PVEGAPTYTVVFRMIMFRPYVGEVIAAKLKDSNSKGLQLSLGFFDDVYVPFYALPVPSHS 120

Query: 121 EPEPNDVDPKHGRWVWRYNEMDLPIDDDSEIRFQVISVDYPPIPLEQEEGSKPFAPMVIT 180
           EP  N   PK  +WVWR+N+ D PID++SEIRF+V  VDYPPIPLEQEEGSKPFAPM++T
Sbjct: 121 EPGDN---PKQVKWVWRFNDEDYPIDEESEIRFRVTRVDYPPIPLEQEEGSKPFAPMLVT 180

Query: 181 GSVNSDGLGPLAWW 195
           GS++SDGLGP+AWW
Sbjct: 181 GSLDSDGLGPIAWW 191
[Close]
BLAST of Spo12743.1 vs. NCBI nr
Match: gi|225437229|ref|XP_002281971.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Vitis vinifera])

HSP 1 Score: 271.9 bits (694), Expect = 8.400e-70
Identity = 132/196 (67.35%), Postives = 154/196 (78.57%), Query Frame = 1 

		  

Query: 1   MFYLSLIEHRLRLPPKLLDLRLEDAIKGQLESIFLDKVIAKAGLCISVYDIKSIDGGFVL 60
           MFYLSLIEH LRLPP LLDL L +AIKG+LES+FLDKVIA  GLCISVYDI+SIDGGFV 
Sbjct: 1   MFYLSLIEHTLRLPPHLLDLPLNEAIKGELESLFLDKVIANLGLCISVYDIRSIDGGFVF 60

Query: 61  PVEGAPTYTVVFRMVMFRPYIGEIITTKLKNSNLKGLQLTLGFFDDIYVPSYALPEPSHM 120
           P +GA TYTV FR+VMFRP++GEIIT KLK S+  GL+L+LGFFDDIY+P + +P P H 
Sbjct: 61  PGDGASTYTVEFRLVMFRPFVGEIITAKLKESDANGLRLSLGFFDDIYIPVHLMPNPCHC 120

Query: 121 EPEPNDVDPKHGR--WVWRYNEMDLPIDDDSEIRFQVISVDYPPIPLEQEEGSKPFAPMV 180
           EP P     K G+  W+W Y E   PID   EIRFQV SV YPPIP+EQ + SKPFAPMV
Sbjct: 121 EPNPE----KKGQVIWIWDYQEQKFPIDGIDEIRFQVQSVSYPPIPVEQPKESKPFAPMV 180

Query: 181 ITGSVNSDGLGPLAWW 195
           I GS++ DGLGP++WW
Sbjct: 181 IMGSLDYDGLGPVSWW 192
[Close]
BLAST of Spo12743.1 vs. NCBI nr
Match: gi|359479790|ref|XP_002271507.2| (PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Vitis vinifera])

HSP 1 Score: 269.6 bits (688), Expect = 4.200e-69
Identity = 128/194 (65.98%), Postives = 153/194 (78.87%), Query Frame = 1 

		  

Query: 1   MFYLSLIEHRLRLPPKLLDLRLEDAIKGQLESIFLDKVIAKAGLCISVYDIKSIDGGFVL 60
           MF+LSLIEH LRLPP LLDL L +AIKG+LES+FLDKV+A  GLCISVYDI+SIDGGFV 
Sbjct: 1   MFFLSLIEHTLRLPPHLLDLPLNEAIKGELESLFLDKVLANLGLCISVYDIRSIDGGFVF 60

Query: 61  PVEGAPTYTVVFRMVMFRPYIGEIITTKLKNSNLKGLQLTLGFFDDIYVPSYALPEPSHM 120
           P +GA TYTV FR+VMFRP++GEIIT KLK S+  GLQL+LGFFDDIY+P + +P P H 
Sbjct: 61  PGDGASTYTVEFRLVMFRPFVGEIITAKLKESDANGLQLSLGFFDDIYIPVHLMPNPCHC 120

Query: 121 EPEPNDVDPKHGRWVWRYNEMDLPIDDDSEIRFQVISVDYPPIPLEQEEGSKPFAPMVIT 180
           EP+P   +     W+W Y E   PID   EIRFQV SV YPPIP+EQ + SKPFAPM+I 
Sbjct: 121 EPDPE--NKSQVIWIWDYQEQKFPIDGLDEIRFQVQSVSYPPIPVEQPKESKPFAPMMIM 180

Query: 181 GSVNSDGLGPLAWW 195
           GS++ DGLGP++WW
Sbjct: 181 GSLDYDGLGPVSWW 192
[Close]
BLAST of Spo12743.1 vs. NCBI nr
Match: gi|661892537|emb|CDP03695.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 269.2 bits (687), Expect = 5.500e-69
Identity = 125/194 (64.43%), Postives = 157/194 (80.93%), Query Frame = 1 

		  

Query: 1   MFYLSLIEHRLRLPPKLLDLRLEDAIKGQLESIFLDKVIAKAGLCISVYDIKSIDGGFVL 60
           MF LS IEH LRLPP LL+L L +AIKG+LE +FLDKVIAK GLCISVYDI+SIDGGF+ 
Sbjct: 1   MFCLSEIEHTLRLPPHLLNLPLAEAIKGELEGLFLDKVIAKLGLCISVYDIRSIDGGFIF 60

Query: 61  PVEGAPTYTVVFRMVMFRPYIGEIITTKLKNSNLKGLQLTLGFFDDIYVPSYALPEPSHM 120
           P +GA TYTV FR++MFRP++GE+I+ +LK S+  GL+L+LGFFDDIY+P   LP PSH 
Sbjct: 61  PGDGASTYTVRFRLLMFRPFLGEVISARLKESSSTGLRLSLGFFDDIYIPRALLPSPSHD 120

Query: 121 EPEPNDVDPKHGRWVWRYNEMDLPIDDDSEIRFQVISVDYPPIPLEQEEGSKPFAPMVIT 180
           EP+P   D    RW+W +NE + PID   EIRF+V S+ YP +PLEQ++GSKPFAPM+IT
Sbjct: 121 EPDPE--DKNQVRWIWEFNEQNYPIDGMDEIRFRVHSIQYPSLPLEQDDGSKPFAPMLIT 180

Query: 181 GSVNSDGLGPLAWW 195
           GS+++DGLGP+AWW
Sbjct: 181 GSLDADGLGPIAWW 192
[Close]
BLAST of Spo12743.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QW46_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_141600 PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 1.900e-108
Identity = 192/194 (98.97%), Postives = 194/194 (100.00%), Query Frame = 1 

		  

Query: 1   MFYLSLIEHRLRLPPKLLDLRLEDAIKGQLESIFLDKVIAKAGLCISVYDIKSIDGGFVL 60
           MFYLSLIEHRLRLPPKLLDLRLEDAIKGQLESIFLDKVIAKAGLCISVYDIKSIDGGFVL
Sbjct: 1   MFYLSLIEHRLRLPPKLLDLRLEDAIKGQLESIFLDKVIAKAGLCISVYDIKSIDGGFVL 60

Query: 61  PVEGAPTYTVVFRMVMFRPYIGEIITTKLKNSNLKGLQLTLGFFDDIYVPSYALPEPSHM 120
           PVEGAPTYTVVFRMVMFRPYIGEIITTKLKNSNLKGLQLTLGFFDDIYVPSYALPEPSHM
Sbjct: 61  PVEGAPTYTVVFRMVMFRPYIGEIITTKLKNSNLKGLQLTLGFFDDIYVPSYALPEPSHM 120

Query: 121 EPEPNDVDPKHGRWVWRYNEMDLPIDDDSEIRFQVISVDYPPIPLEQEEGSKPFAPMVIT 180
           EPEPND+DPKHGRWVWRYNEMDLPIDDDSEIRFQVISVDYPPIPLEQEEG+KPFAPMVIT
Sbjct: 121 EPEPNDIDPKHGRWVWRYNEMDLPIDDDSEIRFQVISVDYPPIPLEQEEGAKPFAPMVIT 180

Query: 181 GSVNSDGLGPLAWW 195
           GSVNSDGLGPLAWW
Sbjct: 181 GSVNSDGLGPLAWW 194
[Close]
BLAST of Spo12743.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CV29_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g055960 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 7.100e-84
Identity = 148/194 (76.29%), Postives = 173/194 (89.18%), Query Frame = 1 

		  

Query: 1   MFYLSLIEHRLRLPPKLLDLRLEDAIKGQLESIFLDKVIAKAGLCISVYDIKSIDGGFVL 60
           MF+LS +EHRLRLPP LL+L LED+IKGQL+SIFLDKVIAK GLC+S+YDIKSI+GGFVL
Sbjct: 1   MFFLSQLEHRLRLPPHLLNLPLEDSIKGQLQSIFLDKVIAKLGLCVSIYDIKSINGGFVL 60

Query: 61  PVEGAPTYTVVFRMVMFRPYIGEIITTKLKNSNLKGLQLTLGFFDDIYVPSYALPEPSHM 120
           PVEGAPTYTVVFRM+MFRPY+GE+I  KLK+SN KGLQL+LGFFDD+YVP YALP PSH 
Sbjct: 61  PVEGAPTYTVVFRMIMFRPYVGEVIAAKLKDSNSKGLQLSLGFFDDVYVPFYALPVPSHS 120

Query: 121 EPEPNDVDPKHGRWVWRYNEMDLPIDDDSEIRFQVISVDYPPIPLEQEEGSKPFAPMVIT 180
           EP  N   PK  +WVWR+N+ D PID++SEIRF+V  VDYPPIPLEQEEGSKPFAPM++T
Sbjct: 121 EPGDN---PKQVKWVWRFNDEDYPIDEESEIRFRVTRVDYPPIPLEQEEGSKPFAPMLVT 180

Query: 181 GSVNSDGLGPLAWW 195
           GS++SDGLGP+AWW
Sbjct: 181 GSLDSDGLGPIAWW 191
[Close]
BLAST of Spo12743.1 vs. UniProtKB/TrEMBL
Match: D7TPA5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g00580 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.900e-69
Identity = 128/194 (65.98%), Postives = 153/194 (78.87%), Query Frame = 1 

		  

Query: 1   MFYLSLIEHRLRLPPKLLDLRLEDAIKGQLESIFLDKVIAKAGLCISVYDIKSIDGGFVL 60
           MF+LSLIEH LRLPP LLDL L +AIKG+LES+FLDKV+A  GLCISVYDI+SIDGGFV 
Sbjct: 1   MFFLSLIEHTLRLPPHLLDLPLNEAIKGELESLFLDKVLANLGLCISVYDIRSIDGGFVF 60

Query: 61  PVEGAPTYTVVFRMVMFRPYIGEIITTKLKNSNLKGLQLTLGFFDDIYVPSYALPEPSHM 120
           P +GA TYTV FR+VMFRP++GEIIT KLK S+  GLQL+LGFFDDIY+P + +P P H 
Sbjct: 61  PGDGASTYTVEFRLVMFRPFVGEIITAKLKESDANGLQLSLGFFDDIYIPVHLMPNPCHC 120

Query: 121 EPEPNDVDPKHGRWVWRYNEMDLPIDDDSEIRFQVISVDYPPIPLEQEEGSKPFAPMVIT 180
           EP+P   +     W+W Y E   PID   EIRFQV SV YPPIP+EQ + SKPFAPM+I 
Sbjct: 121 EPDPE--NKSQVIWIWDYQEQKFPIDGLDEIRFQVQSVSYPPIPVEQPKESKPFAPMMIM 180

Query: 181 GSVNSDGLGPLAWW 195
           GS++ DGLGP++WW
Sbjct: 181 GSLDYDGLGPVSWW 192
[Close]
BLAST of Spo12743.1 vs. UniProtKB/TrEMBL
Match: A0A068U594_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016151001 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 3.800e-69
Identity = 125/194 (64.43%), Postives = 157/194 (80.93%), Query Frame = 1 

		  

Query: 1   MFYLSLIEHRLRLPPKLLDLRLEDAIKGQLESIFLDKVIAKAGLCISVYDIKSIDGGFVL 60
           MF LS IEH LRLPP LL+L L +AIKG+LE +FLDKVIAK GLCISVYDI+SIDGGF+ 
Sbjct: 1   MFCLSEIEHTLRLPPHLLNLPLAEAIKGELEGLFLDKVIAKLGLCISVYDIRSIDGGFIF 60

Query: 61  PVEGAPTYTVVFRMVMFRPYIGEIITTKLKNSNLKGLQLTLGFFDDIYVPSYALPEPSHM 120
           P +GA TYTV FR++MFRP++GE+I+ +LK S+  GL+L+LGFFDDIY+P   LP PSH 
Sbjct: 61  PGDGASTYTVRFRLLMFRPFLGEVISARLKESSSTGLRLSLGFFDDIYIPRALLPSPSHD 120

Query: 121 EPEPNDVDPKHGRWVWRYNEMDLPIDDDSEIRFQVISVDYPPIPLEQEEGSKPFAPMVIT 180
           EP+P   D    RW+W +NE + PID   EIRF+V S+ YP +PLEQ++GSKPFAPM+IT
Sbjct: 121 EPDPE--DKNQVRWIWEFNEQNYPIDGMDEIRFRVHSIQYPSLPLEQDDGSKPFAPMLIT 180

Query: 181 GSVNSDGLGPLAWW 195
           GS+++DGLGP+AWW
Sbjct: 181 GSLDADGLGPIAWW 192
[Close]
BLAST of Spo12743.1 vs. UniProtKB/TrEMBL
Match: A0A0V0HGH9_SOLCH (Putative DNA-directed RNA polymerase III subunit RPC8-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.600e-67
Identity = 122/194 (62.89%), Postives = 158/194 (81.44%), Query Frame = 1 

		  

Query: 1   MFYLSLIEHRLRLPPKLLDLRLEDAIKGQLESIFLDKVIAKAGLCISVYDIKSIDGGFVL 60
           MFYLS IEH+LRLPP+LL+L L +AIKG+LE +F+DKVIA  GL IS+YDI+SID GF+ 
Sbjct: 1   MFYLSEIEHKLRLPPQLLNLPLNEAIKGELEGLFVDKVIANLGLIISIYDIRSIDDGFIY 60

Query: 61  PVEGAPTYTVVFRMVMFRPYIGEIITTKLKNSNLKGLQLTLGFFDDIYVPSYALPEPSHM 120
           P EGA TYTV FR+V+FRP++GE+IT KLK S  +GL+L+LGFFDDIYVP+  LP+PS  
Sbjct: 61  PSEGASTYTVKFRLVVFRPFVGEVITAKLKESKAEGLRLSLGFFDDIYVPAPLLPDPSRS 120

Query: 121 EPEPNDVDPKHGRWVWRYNEMDLPIDDDSEIRFQVISVDYPPIPLEQEEGSKPFAPMVIT 180
           EP+P   +    RW+W+++E+D PID   EIRFQV +V YP +PLEQ++ SKPFAPMVI 
Sbjct: 121 EPDPE--NKNQVRWIWKFDELDYPIDGVDEIRFQVHNVSYPSMPLEQDKDSKPFAPMVIK 180

Query: 181 GSVNSDGLGPLAWW 195
           GS+++DGLGP++WW
Sbjct: 181 GSLDADGLGPISWW 192
[Close]
BLAST of Spo12743.1 vs. ExPASy Swiss-Prot
Match: RPC8_HUMAN (DNA-directed RNA polymerase III subunit RPC8 OS=Homo sapiens GN=POLR3H PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.000e-27
Identity = 72/208 (34.62%), Postives = 108/208 (51.92%), Query Frame = 1 

		  

Query: 1   MFYLSLIEHRLRLPPKLLDLRLEDAIKGQLESIFLDKVIAKAGLCISVYDIKSIDGGFVL 60
           MF L  +   +R+PP   + +L D+I  +L     +KV+   GLCI ++DI  ++  +V 
Sbjct: 1   MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60

Query: 61  PVEGAPTYTVVFRMVMFRPYIGEIITTKLKNSNLKGLQLTLGFFDDIYVPSYALPEPSHM 120
           P +GA    V FR V+F P++ EI+  K+K  + +G+ ++LGFFDDI +P  +L +P+  
Sbjct: 61  PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120

Query: 121 EPEPNDVDPKHGRWVWRY----NEMDLPIDDDSEIRFQVIS---VDYPP-------IPLE 180
                  D     WVW Y       DL +D   EIRF+V+    VD  P           
Sbjct: 121 -------DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTS 180

Query: 181 QEEGSKPFAPMVITGSVNSDGLGPLAWW 195
            EE  K  AP  + GS++  GLG L+WW
Sbjct: 181 SEELPKKEAPYTLVGSISEPGLGLLSWW 201
[Close]
BLAST of Spo12743.1 vs. ExPASy Swiss-Prot
Match: RPC8_MOUSE (DNA-directed RNA polymerase III subunit RPC8 OS=Mus musculus GN=Polr3h PE=1 SV=2)

HSP 1 Score: 122.9 bits (307), Expect = 4.000e-27
Identity = 72/208 (34.62%), Postives = 108/208 (51.92%), Query Frame = 1 

		  

Query: 1   MFYLSLIEHRLRLPPKLLDLRLEDAIKGQLESIFLDKVIAKAGLCISVYDIKSIDGGFVL 60
           MF L  +   +R+PP   + +L D+I  +L     +KV+   GLCI ++DI  ++  +V 
Sbjct: 1   MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60

Query: 61  PVEGAPTYTVVFRMVMFRPYIGEIITTKLKNSNLKGLQLTLGFFDDIYVPSYALPEPSHM 120
           P +GA    V FR V+F P++ EI+  K+K  + +G+ ++LGFFDDI +P  +L +P+  
Sbjct: 61  PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120

Query: 121 EPEPNDVDPKHGRWVWRY----NEMDLPIDDDSEIRFQVIS---VDYPP-------IPLE 180
                  D     WVW Y       DL +D   EIRF+V+    VD  P           
Sbjct: 121 -------DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASS 180

Query: 181 QEEGSKPFAPMVITGSVNSDGLGPLAWW 195
            EE  K  AP  + GS++  GLG L+WW
Sbjct: 181 SEELPKKEAPYTLVGSISEPGLGLLSWW 201
[Close]
BLAST of Spo12743.1 vs. ExPASy Swiss-Prot
Match: RPC8_BOVIN (DNA-directed RNA polymerase III subunit RPC8 OS=Bos taurus GN=POLR3H PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.000e-26
Identity = 71/208 (34.13%), Postives = 108/208 (51.92%), Query Frame = 1 

		  

Query: 1   MFYLSLIEHRLRLPPKLLDLRLEDAIKGQLESIFLDKVIAKAGLCISVYDIKSIDGGFVL 60
           MF L  +   +R+PP   + +L D+I  +L     +KV+   GLCI ++DI  ++  +V 
Sbjct: 1   MFVLVEMVDTVRIPPWQFERKLNDSIDEELNKKLANKVMYNVGLCICLFDITKLEDAYVF 60

Query: 61  PVEGAPTYTVVFRMVMFRPYIGEIITTKLKNSNLKGLQLTLGFFDDIYVPSYALPEPSHM 120
           P +GA    V FR V+F P++ EI+  K+K  + +G+ ++LGFFDDI +P  +L +P+  
Sbjct: 61  PGDGASHTKVHFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120

Query: 121 EPEPNDVDPKHGRWVWRY----NEMDLPIDDDSEIRFQVIS---VDYPP-------IPLE 180
                  D     WVW Y       DL +D   E+RF+V+    VD  P           
Sbjct: 121 -------DEAEQVWVWEYETEEGAHDLYMDIGEEVRFRVVDESFVDTSPTGPSSAEAASS 180

Query: 181 QEEGSKPFAPMVITGSVNSDGLGPLAWW 195
            EE  K  AP  + GS++  GLG L+WW
Sbjct: 181 SEELPKKEAPYTLMGSISEPGLGLLSWW 201
[Close]
BLAST of Spo12743.1 vs. ExPASy Swiss-Prot
Match: RPC8_YEAST (DNA-directed RNA polymerase III subunit RPC8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC25 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.600e-23
Identity = 70/218 (32.11%), Postives = 111/218 (50.92%), Query Frame = 1 

		  

Query: 1   MFYLSLIEHRLRLPPKLLDLRLEDAIKGQLESIFLDKVIAKAGLCISVYDIKSIDGGFVL 60
           MF LS I   +R+PP         AI  QL + F +K+I   GLCI++YD+ +++ G + 
Sbjct: 1   MFILSKIADLVRIPPDQFHRDTISAITHQLNNKFANKIIPNVGLCITIYDLLTVEEGQLK 60

Query: 61  PVEGAPTYTVVFRMVMFRPYIGEIITTKLKNSNLKGLQLT-LGFFDDIYVPSYALPEPSH 120
           P +G+    V FR V+F+P++GEI+T  +     +G++++ LG FDDI++P   L E  +
Sbjct: 61  PGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCY 120

Query: 121 MEPEPNDVDPKHGRWVWRYN-EMDLPIDDDSEIRFQV---ISVDY-PPIPLEQE------ 180
             PE          W+W  + E  L  D + +IRF++   + VD  P  P E+E      
Sbjct: 121 YTPE-------ESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQ 180

Query: 181 -----EGSKPFAPM-------VITGSVNSDGLGPLAWW 195
                EG     P         + GS  +DG+G ++WW
Sbjct: 181 LENEIEGKNEETPQNEKPPAYALLGSCQTDGMGLVSWW 211
[Close]
BLAST of Spo12743.1 vs. ExPASy Swiss-Prot
Match: RPC8_SCHPO (DNA-directed RNA polymerase III subunit rpc8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc25 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 7.700e-23
Identity = 65/209 (31.10%), Postives = 104/209 (49.76%), Query Frame = 1 

		  

Query: 1   MFYLSLIEHRLRLPPKLLDLRLEDAIKGQLESIFLDKVIAKAGLCISVYDIKSIDGGFVL 60
           MF LS     + + P       ++A+  ++   + +KVI   GL I VYD   I  G + 
Sbjct: 1   MFLLSRFSDIISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIK 60

Query: 61  PVEGAPTYTVVFRMVMFRPYIGEIITTKLKNSNLKGLQLTLGFFDDIYVPSYALPEPSHM 120
             +G+    VVFR+++FRP+ GE++  K+K+ + +G+++T+ FFDDI++P   L +P   
Sbjct: 61  YGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVTISFFDDIFIPKDMLFDPCVF 120

Query: 121 EPEPNDVDPKHGRWVWRYNEMD------LPIDDDSEIRFQVISVDYPPIPLEQE------ 180
            P+          WVW+    D      L  D D EIRFQ+ S D+  I  ++       
Sbjct: 121 RPDER-------AWVWKIEGEDGSEGTELYFDIDEEIRFQIESEDFVDISPKRNKNATAI 180

Query: 181 ---EGSKPFAPMVITGSVNSDGLGPLAWW 195
              E  +  +P  +  S + DGLG  AWW
Sbjct: 181 TGTEALESVSPYTLIASCSRDGLGIPAWW 202
[Close]
BLAST of Spo12743.1 vs. TAIR (Arabidopsis)
Match: AT1G06790.1 (RNA polymerase Rpb7 N-terminal domain-containing protein)

HSP 1 Score: 240.0 bits (611), Expect = 1.200e-63
Identity = 111/196 (56.63%), Postives = 150/196 (76.53%), Query Frame = 1 

		  

Query: 1   MFYLSLIEHRLRLPPKLLDLRLEDAIKGQLESIFLDKVIAKAGLCISVYDIKSIDGGFVL 60
           MFYLS +EH LR+PP LL+L LEDAIK  L+++FLDKV+A  GLC+S+YDIKS++GGFVL
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 61  PVEGAPTYTVVFRMVMFRPYIGEIITTKLKNSNLKGLQLTLGFFDDIYVPSYALPEPSHM 120
           P +GA TY V  R+V+FRP++GE+I  K K S+  GL+LTLGFFDDIYVP+  +P+P+  
Sbjct: 61  PGDGAATYKVGLRIVVFRPFVGEVIAAKFKESDANGLRLTLGFFDDIYVPAPLMPKPNRC 120

Query: 121 EPEPNDVDPKHGRWVWRYNE--MDLPIDDDSEIRFQVISVDYPPIPLEQEEGSKPFAPMV 180
           EP+P   + K   WVW Y E   D  +DD  +I+F+V S+ YP +P E+ E +KPFAPMV
Sbjct: 121 EPDP--YNRKQMIWVWEYGEPKEDYIVDDACQIKFRVESISYPSVPTERAEDAKPFAPMV 180

Query: 181 ITGSVNSDGLGPLAWW 195
           +TG+++ DGLGP++WW
Sbjct: 181 VTGNMDDDGLGPVSWW 194
The following BLAST results are available for this feature:
BLAST of Spo12743.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902186606|gb|KNA10726.1|2.7e-10898.9hypothetical protein SOVF_1416... [more]
gi|731322659|ref|XP_010672015.1|1.0e-8376.2PREDICTED: DNA-directed RNA po... [more]
gi|225437229|ref|XP_002281971.1|8.4e-7067.3PREDICTED: DNA-directed RNA po... [more]
gi|359479790|ref|XP_002271507.2|4.2e-6965.9PREDICTED: DNA-directed RNA po... [more]
gi|661892537|emb|CDP03695.1|5.5e-6964.4unnamed protein product [Coffe... [more]
back to top
BLAST of Spo12743.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QW46_SPIOL1.9e-10898.9Uncharacterized protein OS=Spi... [more]
A0A0J8CV29_BETVU7.1e-8476.2Uncharacterized protein OS=Bet... [more]
D7TPA5_VITVI2.9e-6965.9Putative uncharacterized prote... [more]
A0A068U594_COFCA3.8e-6964.4Uncharacterized protein OS=Cof... [more]
A0A0V0HGH9_SOLCH1.6e-6762.8Putative DNA-directed RNA poly... [more]
back to top
BLAST of Spo12743.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RPC8_HUMAN3.0e-2734.6DNA-directed RNA polymerase II... [more]
RPC8_MOUSE4.0e-2734.6DNA-directed RNA polymerase II... [more]
RPC8_BOVIN2.0e-2634.1DNA-directed RNA polymerase II... [more]
RPC8_YEAST2.6e-2332.1DNA-directed RNA polymerase II... [more]
RPC8_SCHPO7.7e-2331.1DNA-directed RNA polymerase II... [more]
back to top
BLAST of Spo12743.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G06790.11.2e-6356.6RNA polymerase Rpb7 N-terminal... [more]
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005576RNA polymerase Rpb7, N-terminalGENE3D3.30.1490.120coord: 1..80
score: 2.0
IPR005576RNA polymerase Rpb7, N-terminalPFAMPF03876SHS2_Rpb7-Ncoord: 10..77
score: 1.7
IPR005576RNA polymerase Rpb7, N-terminalunknownSSF88798N-terminal, heterodimerisation domain of RBP7 (RpoE)coord: 1..78
score: 3.01
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 79..190
score: 4.7
IPR013238RNA polymerase III, subunit Rpc25PFAMPF08292RNA_pol_Rbc25coord: 79..194
score: 9.1
NoneNo IPR availablePANTHERPTHR12709DNA-DIRECTED RNA POLYMERASE II, IIIcoord: 2..194
score: 5.7
NoneNo IPR availablePANTHERPTHR12709:SF1DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC8coord: 2..194
score: 5.7

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0000338 protein deneddylation
biological_process GO:0016567 protein ubiquitination
biological_process GO:0042026 protein refolding
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0034976 response to endoplasmic reticulum stress
biological_process GO:0009408 response to heat
biological_process GO:0009644 response to high light intensity
biological_process GO:0042542 response to hydrogen peroxide
biological_process GO:0001731 formation of translation preinitiation complex
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0009585 red, far-red light phototransduction
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0030163 protein catabolic process
biological_process GO:0009099 valine biosynthetic process
biological_process GO:0009640 photomorphogenesis
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
biological_process GO:0006260 DNA replication
biological_process GO:0051321 meiotic cell cycle
biological_process GO:0034654 nucleobase-containing compound biosynthetic process
biological_process GO:0006996 organelle organization
biological_process GO:0031323 regulation of cellular metabolic process
biological_process GO:0060255 regulation of macromolecule metabolic process
biological_process GO:0080090 regulation of primary metabolic process
biological_process GO:0006571 tyrosine biosynthetic process
biological_process GO:0000162 tryptophan biosynthetic process
biological_process GO:0009094 L-phenylalanine biosynthetic process
biological_process GO:0006438 valyl-tRNA aminoacylation
biological_process GO:0006450 regulation of translational fidelity
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006525 arginine metabolic process
biological_process GO:0006420 arginyl-tRNA aminoacylation
biological_process GO:0006544 glycine metabolic process
biological_process GO:0006426 glycyl-tRNA aminoacylation
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0006560 proline metabolic process
biological_process GO:0006566 threonine metabolic process
biological_process GO:0009098 leucine biosynthetic process
biological_process GO:0009987 cellular process
biological_process GO:0006364 rRNA processing
biological_process GO:0009791 post-embryonic development
biological_process GO:0051301 cell division
biological_process GO:0009097 isoleucine biosynthetic process
biological_process GO:0030244 cellulose biosynthetic process
biological_process GO:0018279 protein N-linked glycosylation via asparagine
biological_process GO:0008152 metabolic process
biological_process GO:0048608 reproductive structure development
biological_process GO:0050794 regulation of cellular process
biological_process GO:0022414 reproductive process
biological_process GO:0006432 phenylalanyl-tRNA aminoacylation
cellular_component GO:0008250 oligosaccharyltransferase complex
cellular_component GO:0009328 phenylalanine-tRNA ligase complex
cellular_component GO:0009505 plant-type cell wall
cellular_component GO:0000502 proteasome complex
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005643 nuclear pore
cellular_component GO:0005634 nucleus
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0008180 COP9 signalosome
cellular_component GO:0033290 eukaryotic 48S preinitiation complex
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
cellular_component GO:0005663 DNA replication factor C complex
cellular_component GO:0042575 DNA polymerase complex
cellular_component GO:0005730 nucleolus
cellular_component GO:0005737 cytoplasm
cellular_component GO:0009345 glycine-tRNA ligase complex
cellular_component GO:0005840 ribosome
cellular_component GO:0005886 plasma membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016282 eukaryotic 43S preinitiation complex
cellular_component GO:0005829 cytosol
cellular_component GO:0009507 chloroplast
molecular_function GO:0005524 ATP binding
molecular_function GO:0003689 DNA clamp loader activity
molecular_function GO:0004814 arginine-tRNA ligase activity
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity
molecular_function GO:0004820 glycine-tRNA ligase activity
molecular_function GO:0002161 aminoacyl-tRNA editing activity
molecular_function GO:0017111 nucleoside-triphosphatase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0004832 valine-tRNA ligase activity
molecular_function GO:0000049 tRNA binding
molecular_function GO:0004826 phenylalanine-tRNA ligase activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0016740 transferase activity
RNA-Seq Expression