Spo12820 (gene)

Overview
NameSpo12820
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr3 : 1209090 .. 1210751 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATTCCCTCCTTCCTTTTAGATTGCTTCGCATACCAAGACTGGATGTTACTTTGAATTTTCCTCATTCAACTTTTGTAAATTTTTCCCATTTGTAAGTTGTTAACACATACCCCACAACTCCACAATGGACATCCCTGTATGGCCAACCTTTTCCCTCAGCCACAGAAAAGTGAAATATCATATCACCCCATTATTGCCCATTCTGTATTTGCATTTTTTTAACGGCATAATACACCCGGTTAACCCGAGCTTAGCTCCGATTACATCCGAATCCGACCTGTGTCGCACACCTTGTTTGTGGTGGGTGAGTTTCTGCATAATTGAGTGTACTCTCATTTAGTTCACACTATCTGGATCGTGAGAAATGGCTTCATTTGGAAGAGTTGTTAATGTTGGGTCAAAGGGGAAGCAAGGTTGTAGTGACCGCACGTTCAAGTTGTAAGCATCTGATTGACTTCTTAAATTTTCAGATGCTGTACTCACCAGTTTATCCTGCATTTTTTGATACTGCGCTTCTTGTTGTGACTTCCACATTGGTATTTTGGGTGATTTCACAGGAAAACAAATAAAATACCTAGAACCACAATAGGAAAATATATCTGTAGCATGGTACACTGGCCAAGTAATGCAATGTTTTCTATCTGTCATACAGTAATACTTGGAGATTATTTTACTTTTACCACATATATTCACCCTTTTTATTTCATTGTTGCAGGTTTTTATGACAGCAAACATAACACTTACGGTTTGAATGGCAGGAAGACATGCCTAACTGCCAAAGATTGTGATCACCATGTTGATCTTTGTCACTCAAGCAGACTTGCAATATCGTCTGTTTGAGTTTTACAGACAAGCAGCCGAAACAGGGAATAATCAGTTCAGGTCACAGAGTTTATGGCAGATGTTACGATATTAAATTTTAAAAATGCTAAAGGTATTATAGCACTATTTCTTTTTGCTACTTCACAAATGGTTTATCTTGTTTGCATCCCTAATTCTGATTGTTGTACTATTCATCATTTGTGCAGCATATTGCTGCTTCAGAGTCTGATCATAACAAACTGTAGTGAAGAAGAGGAGAAAACTGAAAACTTTTGGCAAAACGCAAAATTGCAGTGCCCTGGAAAGGCAGGGGAATCCAGTGCCTCGGGTATGGGGGATTACTCGACAACTCCTGTTCTGACGATCCTTTTTCAACCCGGTTTGTTCCGGTTTTCAGCTATGGGTTTTTCCTTGTACTTATCAGGCACACATAAAAGGCTCCTTCGTGTTTTAGAAACCTACTCTTCTCTTTTTTTTTCACCTTTCTTCATCCCATTGTAAAAGTTCCAATAGATACAGAACTTGCAACGCCGCCCTTTAGATGTATAATTACCAGTTCAGTACAGAGCAAATAGGCTTAAGGCGTTGTAGCATTGTTCGTTCTGATTTTTACGGCACTGATATCCCTCATTTGCAGCTCTACTTCTAGAAACTCTTTCATTCTTTAGTTTTCCTTTTGATTCATGTAACAGTTGAACCTTCTTTCATGACTGATATAGAATCAGGCAGCTACTTCACTACTTCTATGTTGATCTTATTTTGTAATAAACTTTGATAGATTGAATAAAGGTTGTTTGCAGTGACTTCTTAAGATGTGATTAGAAGTCCATAATCAC

mRNA sequence

ATGTATTCCCTCCTTCCTTTTAGATTGCTTCGCATACCAAGACTGGATGTTACTTTGAATTTTCCTCATTCAACTTTTGTAAATTTTTCCCATTTTGTACTCTCATTTAGTTCACACTATCTGGATCGTGAGAAATGGCTTCATTTGGAAGAGTTGTTAATGTTGGGTCAAAGGGGAAGCAAGGTTGTAGTGACCGCACGTTCAAGTTGTTTTTATGACAGCAAACATAACACTTACGGTTTGAATGGCAGGAAGACATGCCTAACTGCCAAAGATTGTGATCACCATGTTGATCTTTGTCACTCAAGCAGACTTGCAATATCCATATTGCTGCTTCAGAGTCTGATCATAACAAACTGTAGTGAAGAAGAGGAGAAAACTGAAAACTTTTGGCAAAACGCAAAATTGCAGTGCCCTGGAAAGGCAGGGGAATCCAGTGCCTCGGGTATGGGGGATTACTCGACAACTCCTGTTCTGACGATCCTTTTTCAACCCGGTTTGTTCCGGTTTTCAGCTATGGGTTTTTCCTTGTACTTATCAGGCACACATAAAAGGCTCCTTCGTGTTTTAGAAACCTACTCTTCTCTTTTTTTTTCACCTTTCTTCATCCCATTGTAAAAGTTCCAATAGATACAGAACTTGCAACGCCGCCCTTTAGATGTATAATTACCAGTTCAGTACAGAGCAAATAGGCTTAAGGCGTTGTAGCATTGTTCGTTCTGATTTTTACGGCACTGATATCCCTCATTTGCAGCTCTACTTCTAGAAACTCTTTCATTCTTTAGTTTTCCTTTTGATTCATGTAACAGTTGAACCTTCTTTCATGACTGATATAGAATCAGGCAGCTACTTCACTACTTCTATGTTGATCTTATTTTGTAATAAACTTTGATAGATTGAATAAAGGTTGTTTGCAGTGACTTCTTAAGATGTGATTAGAAGTCCATAATCAC

Coding sequence (CDS)

ATGTATTCCCTCCTTCCTTTTAGATTGCTTCGCATACCAAGACTGGATGTTACTTTGAATTTTCCTCATTCAACTTTTGTAAATTTTTCCCATTTTGTACTCTCATTTAGTTCACACTATCTGGATCGTGAGAAATGGCTTCATTTGGAAGAGTTGTTAATGTTGGGTCAAAGGGGAAGCAAGGTTGTAGTGACCGCACGTTCAAGTTGTTTTTATGACAGCAAACATAACACTTACGGTTTGAATGGCAGGAAGACATGCCTAACTGCCAAAGATTGTGATCACCATGTTGATCTTTGTCACTCAAGCAGACTTGCAATATCCATATTGCTGCTTCAGAGTCTGATCATAACAAACTGTAGTGAAGAAGAGGAGAAAACTGAAAACTTTTGGCAAAACGCAAAATTGCAGTGCCCTGGAAAGGCAGGGGAATCCAGTGCCTCGGGTATGGGGGATTACTCGACAACTCCTGTTCTGACGATCCTTTTTCAACCCGGTTTGTTCCGGTTTTCAGCTATGGGTTTTTCCTTGTACTTATCAGGCACACATAAAAGGCTCCTTCGTGTTTTAGAAACCTACTCTTCTCTTTTTTTTTCACCTTTCTTCATCCCATTGTAA

Protein sequence

MYSLLPFRLLRIPRLDVTLNFPHSTFVNFSHFVLSFSSHYLDREKWLHLEELLMLGQRGSKVVVTARSSCFYDSKHNTYGLNGRKTCLTAKDCDHHVDLCHSSRLAISILLLQSLIITNCSEEEEKTENFWQNAKLQCPGKAGESSASGMGDYSTTPVLTILFQPGLFRFSAMGFSLYLSGTHKRLLRVLETYSSLFFSPFFIPL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo12820.1Spo12820.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo12820.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo12820.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo12820.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo12820.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo201060.67Barchart | Table