Spo12843 (gene)

Overview
NameSpo12843
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr3 : 1478954 .. 1481078 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGATCACACACAATGAAGGGTACGTTGTGTGTAGTACCTGACATTAGACAATATAAGTTCAAATAAATTTAGACAAAATGAGTTATATGATACTCCCTCCGTCTCTTTTTGTTCTTTACGTTTGATGTTATTCACGCGATTTAACGACTATTTAATGTTCATTGAGATTACACTACTTTTTTTTATTTAAACAAGAAAAATTACGTGTATTTATAATGTTTTCACTTTTATCAAAAATATGACATCGGGAAAATGAGAAATATTTAATGTCCAATAGATTTAATTGGTTAAAATAATATTTGGGCACAAATTCTGATAGACTATTAATTCATTATGTGATAATATAAAAAGAAACGTAAAGAACAAAATGAGACACCCAAAATAGAATACGTAAAAAACAAAAAGAGACGGAGGAAGTACATTTTTGTTCACAAAAGGAAAGTAATGCTACATTAGAAATAGGTTTGTGCATACACACAAATAGGTTATGCTAAAATCAAAACATGTTTGGATAAGTATATAAGTTCAAACAGTATAAGTGTCGATAGAATAAGCGAATGAAACAAAACGTTAGTCAAACACAATTGAACAAAAAGCACTTTTATACACACATTTACTATTAGTTTGAACAACTTTGAAGTTATTAAATAAACATGCAATTATCATTGAAATAGTAGCGAGAAAAAAATGTGTTATTGATGGAATAGGCTTTTAAGTGTGTCAACCGCAAAAGAAAGCAATTAAAGTTAGATCAATGCACATTATTTGTTTGTCCATGTCTTCCTTACATAATATCAAATTCCATTAACTAATTTTGCCAAAAGAAAAAGATTTAAAATGACCAAAGGTTTGTTTGATACTGAACTCCCCCTCTTCATGAGTATCATTTGGACTTTCAAGACCACCACTAGTTATTATAGGAGATGTGTTTCTCTATTAATGAGCAACATCTTACTGCTCGATCATCATGCTAACTCGTTTTCCATAAACATGTCACATGAATAAGAGATGACCTGATAATGTTTACTAGACCACTAGTGATACAAATTCGAAAATAAGAAAAACCTAAGCCAAATCAAAAGTTTATATCATATTCTTTTTTATGAGAGGATTCTAGATCATCTCTGAATAAATAAGAAAGACCATAATTAGACCAAATCAAACTTTAGAAAATTGAGATCCAACCACCTTAAACATGGTCATATTTCATCGGATAACCACTAATGATACAAATTTACAGGGTACAAAGCAAAATAATAAATAAAAAAGCAAGTAAAATACAATAGAAGTGCGACGTCAACATGCATTGTTGTGATACAAAATAAAAATTAGGACAACTTCAGCTAAATCAAAAGTCTTAGATCAAATTCTTTTATGCTAGAGAATTTAGACCATCGATCACATAACAAATAAGAAAACTATAATTACACCCAATTAAACTTTAGAAAATTCTCGTGAAGAGGATGGATTAATACGAAGTATTTAACAAACCTCGATCTATCATTTTTATTAAAAAAAAACTTTAGAAATTCCATACTTGAACAACATTGTCAATTTTTTTTTGAATAGTCACTAGCGACACGAATTTACGAGAGACACGATTACACGAACCGAAAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACATGGTCATATTTCCTCGGATAGTCACTAGCTACACAAATTCACAAAGGACACAAAACAAAAGAATAATAAAAAATAAAAAAAAAAGGGGAAAAGGAAAAGTCAAATAGAAGTGCGATGCGCACTGTTGGTACATTCACGAACACGCCGCTGATTTCTTGGTCAGCAAATTTAACCCTCTTCCTAAAAAACGAAAATGGGGTTTGGTTTGGTAATAATAATAGTCAAATTTTAAAGATTTGCAACATTAACGGGGTCATTCATTCATACATTCATCATCAAATTCATACATAAACATAACCCCAGATTTGTTTCTTACGACTCTTTAAAGATCCAACAACCTACCTTTTCTCTCTCCTCTTTTGTCTCCTTCATCCTCCTTTGCTTTACTTACTACCAACAGCGTACCTTCTTTCTTCACCAACAATTTTCTTTACTAGTTACAAGTTACAACCCATTTCTTAAACAATAA

mRNA sequence

ATGGGGATCACACACAATGAAGGATTTGCAACATTAACGGGGTCATTCATTCATACATTCATCATCAAATTCATACATAAACATAACCCCAGATTTGTTTCTTACGACTCTTTAAAGATCCAACAACCTACCTTTTCTCTCTCCTCTTTTGTCTCCTTCATCCTCCTTTGCTTTACTTACTACCAACAGCGTACCTTCTTTCTTCACCAACAATTTTCTTTACTAGTTACAAGTTACAACCCATTTCTTAAACAATAA

Coding sequence (CDS)

ATGGGGATCACACACAATGAAGGATTTGCAACATTAACGGGGTCATTCATTCATACATTCATCATCAAATTCATACATAAACATAACCCCAGATTTGTTTCTTACGACTCTTTAAAGATCCAACAACCTACCTTTTCTCTCTCCTCTTTTGTCTCCTTCATCCTCCTTTGCTTTACTTACTACCAACAGCGTACCTTCTTTCTTCACCAACAATTTTCTTTACTAGTTACAAGTTACAACCCATTTCTTAAACAATAA

Protein sequence

MGITHNEGFATLTGSFIHTFIIKFIHKHNPRFVSYDSLKIQQPTFSLSSFVSFILLCFTYYQQRTFFLHQQFSLLVTSYNPFLKQ
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo12843.1Spo12843.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo12843.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12843.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12843.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12843.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019497 hexachlorocyclohexane metabolic process
biological_process GO:0030007 cellular potassium ion homeostasis
biological_process GO:0009657 plastid organization
biological_process GO:0042908 xenobiotic transport
biological_process GO:0007165 signal transduction
biological_process GO:0009651 response to salt stress
biological_process GO:0000226 microtubule cytoskeleton organization
biological_process GO:0008152 metabolic process
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0043090 amino acid import
biological_process GO:0010207 photosystem II assembly
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0006164 purine nucleotide biosynthetic process
biological_process GO:0006560 proline metabolic process
biological_process GO:0048481 plant ovule development
biological_process GO:0006591 ornithine metabolic process
biological_process GO:0006526 arginine biosynthetic process
biological_process GO:0006771 riboflavin metabolic process
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0009735 response to cytokinin
biological_process GO:0010206 photosystem II repair
biological_process GO:0010286 heat acclimation
biological_process GO:0006631 fatty acid metabolic process
biological_process GO:0010155 regulation of proton transport
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0006364 rRNA processing
biological_process GO:0010114 response to red light
biological_process GO:0009644 response to high light intensity
biological_process GO:0010218 response to far red light
biological_process GO:0009637 response to blue light
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0010264 myo-inositol hexakisphosphate biosynthetic process
biological_process GO:0006655 phosphatidylglycerol biosynthetic process
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0030154 cell differentiation
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0015671 oxygen transport
biological_process GO:0019432 triglyceride biosynthetic process
biological_process GO:0015979 photosynthesis
biological_process GO:0010224 response to UV-B
biological_process GO:0009963 positive regulation of flavonoid biosynthetic process
biological_process GO:0009737 response to abscisic acid
biological_process GO:0009733 response to auxin
biological_process GO:0006694 steroid biosynthetic process
biological_process GO:0006570 tyrosine metabolic process
biological_process GO:0016114 terpenoid biosynthetic process
biological_process GO:0009744 response to sucrose
biological_process GO:0010363 regulation of plant-type hypersensitive response
biological_process GO:0019384 caprolactam catabolic process
biological_process GO:0006952 defense response
biological_process GO:0080167 response to karrikin
biological_process GO:0016099 monoterpenoid biosynthetic process
biological_process GO:0006096 glycolytic process
biological_process GO:0046486 glycerolipid metabolic process
biological_process GO:0006612 protein targeting to membrane
biological_process GO:0035335 peptidyl-tyrosine dephosphorylation
biological_process GO:0009813 flavonoid biosynthetic process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0072593 reactive oxygen species metabolic process
biological_process GO:0055085 transmembrane transport
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0043407 negative regulation of MAP kinase activity
biological_process GO:0009231 riboflavin biosynthetic process
biological_process GO:0016556 mRNA modification
biological_process GO:0010150 leaf senescence
biological_process GO:0055072 iron ion homeostasis
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0009755 hormone-mediated signaling pathway
biological_process GO:0006094 gluconeogenesis
cellular_component GO:0009349 riboflavin synthase complex
cellular_component GO:0016471 vacuolar proton-transporting V-type ATPase complex
cellular_component GO:0016020 membrane
cellular_component GO:0044464 cell part
cellular_component GO:0000325 plant-type vacuole
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005829 cytosol
cellular_component GO:0033179 proton-transporting V-type ATPase, V0 domain
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0009348 ornithine carbamoyltransferase complex
cellular_component GO:0009523 photosystem II
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0031977 thylakoid lumen
molecular_function GO:0042626 ATPase activity, coupled to transmembrane movement of substances
molecular_function GO:0051996 squalene synthase activity
molecular_function GO:0003993 acid phosphatase activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0015078 proton transmembrane transporter activity
molecular_function GO:0004310 farnesyl-diphosphate farnesyltransferase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0016597 amino acid binding
molecular_function GO:0008430 selenium binding
molecular_function GO:0047504 (-)-menthol dehydrogenase activity
molecular_function GO:0031072 heat shock protein binding
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0004746 riboflavin synthase activity
molecular_function GO:0004725 protein tyrosine phosphatase activity
molecular_function GO:0008138 protein tyrosine/serine/threonine phosphatase activity
molecular_function GO:0008106 alcohol dehydrogenase (NADP+) activity
molecular_function GO:0047501 (+)-neomenthol dehydrogenase activity
molecular_function GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0019825 oxygen binding
molecular_function GO:0005344 oxygen carrier activity
molecular_function GO:0004585 ornithine carbamoyltransferase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0008281 sulfonylurea receptor activity
molecular_function GO:0008559 xenobiotic transmembrane transporting ATPase activity
molecular_function GO:0008375 acetylglucosaminyltransferase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo228110.75Barchart | Table
Spo062930.75Barchart | Table
Spo225830.74Barchart | Table
Spo019250.73Barchart | Table
Spo059150.73Barchart | Table
Spo211440.73Barchart | Table
Spo142250.72Barchart | Table
Spo175780.71Barchart | Table
Spo212540.71Barchart | Table
Spo162400.71Barchart | Table
Spo026650.71Barchart | Table
Spo251070.71Barchart | Table
Spo244250.71Barchart | Table
Spo029180.70Barchart | Table
Spo233320.70Barchart | Table
Spo167970.70Barchart | Table
Spo154610.70Barchart | Table
Spo212150.70Barchart | Table
Spo266100.70Barchart | Table
Spo235490.70Barchart | Table
Spo087130.69Barchart | Table
Spo052350.69Barchart | Table
Spo266970.69Barchart | Table
Spo093350.69Barchart | Table
Spo069720.69Barchart | Table
Spo199380.69Barchart | Table
Spo083510.69Barchart | Table
Spo061640.68Barchart | Table
Spo016860.68Barchart | Table
Spo028900.68Barchart | Table
Spo088500.68Barchart | Table
Spo089350.68Barchart | Table
Spo095540.68Barchart | Table
Spo096710.68Barchart | Table
Spo102350.68Barchart | Table
Spo102840.68Barchart | Table
Spo136140.68Barchart | Table
Spo160790.68Barchart | Table
Spo240460.67Barchart | Table
Spo246750.67Barchart | Table
Spo264300.67Barchart | Table
Spo025730.67Barchart | Table
Spo208690.67Barchart | Table
Spo010540.67Barchart | Table
Spo054020.67Barchart | Table
Spo217230.67Barchart | Table
Spo273640.67Barchart | Table
Spo161880.67Barchart | Table
Spo033620.67Barchart | Table
Spo029320.67Barchart | Table
Spo093810.67Barchart | Table
Spo028130.67Barchart | Table
Spo083390.66Barchart | Table
Spo251590.66Barchart | Table
Spo060040.66Barchart | Table
Spo037570.66Barchart | Table
Spo015480.66Barchart | Table
Spo081140.66Barchart | Table
Spo180800.66Barchart | Table
Spo123700.66Barchart | Table
Spo108980.66Barchart | Table
Spo205440.66Barchart | Table
Spo216360.66Barchart | Table
Spo050730.66Barchart | Table
Spo270810.65Barchart | Table
Spo185780.65Barchart | Table
Spo078020.65Barchart | Table
Spo217480.65Barchart | Table
Spo230760.65Barchart | Table
Spo237120.65Barchart | Table
Spo026960.65Barchart | Table
Spo128230.65Barchart | Table
Spo137740.65Barchart | Table