Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCCAATTTGGTGTCCTTCTTCTTCCCCGCCACCTCCCCAATGCAAACTTCCAGATTCTTCTCAGTTACAGTAGTCTTGTGATTATTTCTCCAGAATTCACGCCCTTCTTCCAATTAAAGAAACAAACTTCAAAAAAAACAAAACAAAAAAAGGAAAATTCTGACCCAATTCCTCTAGGAAGAAGAAGAAGAATCCTTGTTCTTGTAAAATTCTCACTCGGAAATCTTAAATCAGAAATCACAAAATTTCAATCTTCTTTTTGTTGTACTTCTATTTATTCCAATTGTTCCAAATACCCAACAAATTCCTACTTTTTCAAAAATCAATAAGAAATTCATTAATGACCCTGAATTTCAACAATTTGGATCAAAGGTAGCACCTTTTCTTCTCCAGAAAATCATGGCATCATGGAACAGACAATCAAGGTTTGTTTACAACACTTTTAAAAGCTTAAGCTCCAAGTTATTACCTAAAACCCCAATTCAATCCCCTTCCCCAAGGCTTAATTCAAGTTCATCTTCTTTGTTTTACAATCAATTTAAGCCATCTAGGTTATTTGGGTCACCTTCAATTTCTGGGAATTTTAATGGGTTTAAGCAGAATCAAACCAGCAGCTTGTTTTCTGGTATTATTACTAGGAGAAATTACTATGTTGATAGTAACCAAATTCGACACTTTAAACCAAGAGGTTTTAAATCATGGTTTCAGAACCCTAGACATATGTTTATTGTAGTTGTGGTTGGTTCTGGTGTTGTGATTACTGTTTATTTTGGTAATTGTGAGATTGTGCCCTATACAAAGAGGAAACATTTAGTGCTTTTATCAAAATCCATTGAAAGGAGTATAGGAGAATCCGAATTCGAGAAGATGAAGAAAGAAATGAAAGGGAAAATATTGCCTGCAATTCACCCTGATAGTGTAAAGATTAGGTTGATTTCTAAGGACATTATTCAATCACTTGAAAGAGGGATAAGCCATGAACAAGTTTGGAGTGATCCAGGTTATGCCGTGGAAGGCGGTAGCACCCATAACGAGGTTGATGGGGGTGAAACTTTGAGAGCTTTTACTGAGGTTGAAGAAGAGAACGGGGTCGAGAATTGGCGTAAAGGGGAGGAAATGCTTGATGATACTTGGGTTAAAGATAGTAGGAAAAAGGGGGAGGAAAATAAGGCTAAGGCTTATACTGATCATTTGGAAGGGATGAATTGGGAAGTTTTGGTTGTTGATGAACCAGTTGTGAATGCCTTTTGTTTGCCAGGTGGGAAGATTGTTGTTTACACTGGATTGCTTAGGCATTTTCAATCAGATGTTGAAGTTGCTACAATTATTGGGCATGAGGTATGCATTTACTTACTTCAATTTGTAAAATTGTTGTTCTTTTTTGTGTTTTGAAGGTATTGTTTGAACATTAATGATGCTTACTAACTTATCTGAACTTATTTTATCTGATCAAAACTTATTTTGACTGAATAAACTTATTTGTGTGTTAAAATGTATGAAACTTGTCTCCTTTATGAGGTCTTGATTACCTCTTGATAATGTATTTCCTATTTCTGCATTTTAAAAAATGTATGAAACTTATTTTTTCTGAACTTATATTATCTGAAATTAACTGAACTTATTTGAACTGTTTGAAATAAGTCAAGCAGAACATATCCTAAATCACTGCAAAGCGAATGACATTTTTTTTGTTGGTGTATTTTTGTTCAAGGTTGGGCATGCTGTGGCTCGGCATTCTGCAGAACAGATTACAAAGAACTTGTGGATGGCAATCTTACAACTGATCCTTTATCAGTTCATCGCGCCTGATTTTGCCAATGCAATGTCGAATCTTCTCCTAAGGCTTCCTTTTTCCCGAAAGTAAGTCTGTTGCTCCTAAATCCTAATATGTTTTTTCTTGATTGTTTACTTTGGCATTTTCTTTGTGAGATAAATGTGTAATTCCCTTTTAATGACATATGTTACAGTTCCTGTTTTTAAGGTTCCACGATAGTATAATTGCTTTAAGTTCAGTTGTATGTTTCTTCTTGGTTGAACGATGATTAAATGCTCTCATGCTGCCACACTGCATGAGAGTCACTGGTACACTAGGGCATGACATATAACTTATGGGGAAGTTGAGAATGTTTAGCAAATATTACAAGATTCGAATGGTTCAGGTGAACTCTGTCATAGTTTTCTACCTTAAGGCTCCGTTTGTTTTGACGGAAAACACCTTTACAGAAGATGATTTCCCCATTTTCCTTTGTTTGTTTTTATTAAGGGTGGAAAACAATTTTCCCAAAGGTGGAAAATAACTTTCTTCTGAAAAGAAGGAATGCCACATTTTCCAGTATAATCCCTTATATTTCCTTTTCTCTCATCTCATTTCCACTTCTATGTTCTTTTTCTTAATAATTTTTCTTGTAAGGAACCAAGCAAAGGAAAACTATTTTACCTTGATGTTTTCCCTTGAAAATTGTCTTCGATGGAAAATCATTTTCCTTTGAAAATGTTTTCCGTTGAAACAAACAGAGCCTAAATCTCTTAATGGCCTGAGTATTTTAATTTTAGCTGAGAACCAAAGGAAAGAGAAGACGATTAAAGGGGTTGGTTTCCTACTGATGCAGTTTGAACTTTTAATTATCTTTTGCTGATATAGATTTGGGTGAGAGAAACTGAGGGGGAGTAGTAAGGTGACTTTATAGCAGATTAGTGAGTCTAGTGACTAAAAAGCAGGCAATTTCAAGTGATCATATCGTTTAATTTCTTCGTGATTTTATGACAAGTCCATGATGGTTGATAATTGAACTTAGTCATCTAGATGATTTTGTGTTTCAGCATACCTGCCAACACATATTAACTTGTTTCATCCGACATTGTTATCAATATGGACATCCGTTCTCTGATACTCTTGTAATGGTGGAAATACATGAAGAGAAATAGCTTTCTTCTTTATAGGTAGCATAACGGAGTACTTATTTATTGTATAACAACCTGTTAAATTTGAAAGTTCCAGGGAAATATTCTGATATGTTTTCCCAACTATTTTTTGCATCATCTGGATTGCATTCCACATGTTTGAACTTCCATCTGTTGATGTTGAACTGGTCAGCAGTGTTTCGAGTTCTTCGTTTTTGGATTAGGTTTATATCATTTCTCTTAGTTTAAACCCCACTTGCTAATGATATGAACCAAGAGGTGAATGTTTTCATAGATTCATGTTTCGAACACTTTCTTTCGATGCAAAATTCGCTAATCTGCTTCTAATCATGGACCGTATGGCATTCTCAAAGTCGATTGCATCAGAATTTTGAACACTAGTTCATTCTTTTGCATGCCAAAGGTGTCAATTTTCCTGTTTGCTCTTTTCTTATGGATTCTTGCAAATCTTACTACAGCTTTTCAGTGACCATATCAACAATACAATTCTGTCATAACTGTCTAAATCCAAACATTTCTGCTACTACTTTTGCAAGTTCTTAAATAGTCCTAGGTTTCTGCAACGAAAGGCTTCTCGCCTATTTCACACCCCCCTCTCCTCTCCTCTCCTCTCCATTGTAGTTCTCAACTTCTTGTACTATCAAGGATCTTGTTCTATTCGACTTATTTTGTCTGAGCTTATATTCTCTGAACTTTCTGAACTTATTTTATTCGAAAAAACTCACTTTGTCATAAAATCTGAAATAAACTTATTTGTGTGTGAAAATATCTAAAAAAAACCTATTTTTTTCTAAACTTATCTTATCTGAACTTATATTATCTTATCTGAACTTATTTTATGCGAAATAAGTTAAAGTAAGTCGAACAGAACATAGCCTAAGAAGACTAGAAGAGAAAAGTCAAAGTAAGATATAGCTTAGCCTTTTTTATCTAATATACTTTTGTGTGGTTATTATTGTGTAGGATGGAAATAGAAGCAGATTACATAGGACTACTATTAATGGCTTCAGCTGGATACGACCCACGAATCGCACCTCAAGTATACGAGAAGCTAGGAAAGATATCCGGTGCATCCGGAGGACTTGAAGACTATCTTTCAACTCACCCGTCTGGGAAAACGAGAGCTCAGTTATTAGCTCGGGCTCATATTATGGAGGAAGCGATCAATTTGTACCGTGAAGCTTCGGGCGGGCGGGCAGTTGAAGGGTTTCTGTAACCCAAAACATTTTGAAATGTTGTTTTAAGTTGAGAAAACCTCAACAATCAAGCTTATTTATGTTACATTGTTGTTGGTAACCCTGTAAATTTAGCCATTTTAAAGTTTTTCCTACATTTTGTTGTTGATGTGCCTTTGAATGCGATAATGAGGCCATCTGTTTACCTTATTTTCACTTTTTTTATCAT TCCAATTTGGTGTCCTTCTTCTTCCCCGCCACCTCCCCAATGCAAACTTCCAGATTCTTCTCAGTTACAGTAGTCTTGTGATTATTTCTCCAGAATTCACGCCCTTCTTCCAATTAAAGAAACAAACTTCAAAAAAAACAAAACAAAAAAAGGAAAATTCTGACCCAATTCCTCTAGGAAGAAGAAGAAGAATCCTTGTTCTTGTAAAATTCTCACTCGGAAATCTTAAATCAGAAATCACAAAATTTCAATCTTCTTTTTGTTGTACTTCTATTTATTCCAATTGTTCCAAATACCCAACAAATTCCTACTTTTTCAAAAATCAATAAGAAATTCATTAATGACCCTGAATTTCAACAATTTGGATCAAAGGTAGCACCTTTTCTTCTCCAGAAAATCATGGCATCATGGAACAGACAATCAAGGTTTGTTTACAACACTTTTAAAAGCTTAAGCTCCAAGTTATTACCTAAAACCCCAATTCAATCCCCTTCCCCAAGGCTTAATTCAAGTTCATCTTCTTTGTTTTACAATCAATTTAAGCCATCTAGGTTATTTGGGTCACCTTCAATTTCTGGGAATTTTAATGGGTTTAAGCAGAATCAAACCAGCAGCTTGTTTTCTGGTATTATTACTAGGAGAAATTACTATGTTGATAGTAACCAAATTCGACACTTTAAACCAAGAGGTTTTAAATCATGGTTTCAGAACCCTAGACATATGTTTATTGTAGTTGTGGTTGGTTCTGGTGTTGTGATTACTGTTTATTTTGGTAATTGTGAGATTGTGCCCTATACAAAGAGGAAACATTTAGTGCTTTTATCAAAATCCATTGAAAGGAGTATAGGAGAATCCGAATTCGAGAAGATGAAGAAAGAAATGAAAGGGAAAATATTGCCTGCAATTCACCCTGATAGTGTAAAGATTAGGTTGATTTCTAAGGACATTATTCAATCACTTGAAAGAGGGATAAGCCATGAACAAGTTTGGAGTGATCCAGGTTATGCCGTGGAAGGCGGTAGCACCCATAACGAGGTTGATGGGGGTGAAACTTTGAGAGCTTTTACTGAGGTTGAAGAAGAGAACGGGGTCGAGAATTGGCGTAAAGGGGAGGAAATGCTTGATGATACTTGGGTTAAAGATAGTAGGAAAAAGGGGGAGGAAAATAAGGCTAAGGCTTATACTGATCATTTGGAAGGGATGAATTGGGAAGTTTTGGTTGTTGATGAACCAGTTGTGAATGCCTTTTGTTTGCCAGGTGGGAAGATTGTTGTTTACACTGGATTGCTTAGGCATTTTCAATCAGATGTTGAAGTTGCTACAATTATTGGGCATGAGGTTGGGCATGCTGTGGCTCGGCATTCTGCAGAACAGATTACAAAGAACTTGTGGATGGCAATCTTACAACTGATCCTTTATCAGTTCATCGCGCCTGATTTTGCCAATGCAATGTCGAATCTTCTCCTAAGGCTTCCTTTTTCCCGAAAGATGGAAATAGAAGCAGATTACATAGGACTACTATTAATGGCTTCAGCTGGATACGACCCACGAATCGCACCTCAAGTATACGAGAAGCTAGGAAAGATATCCGGTGCATCCGGAGGACTTGAAGACTATCTTTCAACTCACCCGTCTGGGAAAACGAGAGCTCAGTTATTAGCTCGGGCTCATATTATGGAGGAAGCGATCAATTTGTACCGTGAAGCTTCGGGCGGGCGGGCAGTTGAAGGGTTTCTGTAACCCAAAACATTTTGAAATGTTGTTTTAAGTTGAGAAAACCTCAACAATCAAGCTTATTTATGTTACATTGTTGTTGGTAACCCTGTAAATTTAGCCATTTTAAAGTTTTTCCTACATTTTGTTGTTGATGTGCCTTTGAATGCGATAATGAGGCCATCTGTTTACCTTATTTTCACTTTTTTTATCAT ATGGCATCATGGAACAGACAATCAAGGTTTGTTTACAACACTTTTAAAAGCTTAAGCTCCAAGTTATTACCTAAAACCCCAATTCAATCCCCTTCCCCAAGGCTTAATTCAAGTTCATCTTCTTTGTTTTACAATCAATTTAAGCCATCTAGGTTATTTGGGTCACCTTCAATTTCTGGGAATTTTAATGGGTTTAAGCAGAATCAAACCAGCAGCTTGTTTTCTGGTATTATTACTAGGAGAAATTACTATGTTGATAGTAACCAAATTCGACACTTTAAACCAAGAGGTTTTAAATCATGGTTTCAGAACCCTAGACATATGTTTATTGTAGTTGTGGTTGGTTCTGGTGTTGTGATTACTGTTTATTTTGGTAATTGTGAGATTGTGCCCTATACAAAGAGGAAACATTTAGTGCTTTTATCAAAATCCATTGAAAGGAGTATAGGAGAATCCGAATTCGAGAAGATGAAGAAAGAAATGAAAGGGAAAATATTGCCTGCAATTCACCCTGATAGTGTAAAGATTAGGTTGATTTCTAAGGACATTATTCAATCACTTGAAAGAGGGATAAGCCATGAACAAGTTTGGAGTGATCCAGGTTATGCCGTGGAAGGCGGTAGCACCCATAACGAGGTTGATGGGGGTGAAACTTTGAGAGCTTTTACTGAGGTTGAAGAAGAGAACGGGGTCGAGAATTGGCGTAAAGGGGAGGAAATGCTTGATGATACTTGGGTTAAAGATAGTAGGAAAAAGGGGGAGGAAAATAAGGCTAAGGCTTATACTGATCATTTGGAAGGGATGAATTGGGAAGTTTTGGTTGTTGATGAACCAGTTGTGAATGCCTTTTGTTTGCCAGGTGGGAAGATTGTTGTTTACACTGGATTGCTTAGGCATTTTCAATCAGATGTTGAAGTTGCTACAATTATTGGGCATGAGGTTGGGCATGCTGTGGCTCGGCATTCTGCAGAACAGATTACAAAGAACTTGTGGATGGCAATCTTACAACTGATCCTTTATCAGTTCATCGCGCCTGATTTTGCCAATGCAATGTCGAATCTTCTCCTAAGGCTTCCTTTTTCCCGAAAGATGGAAATAGAAGCAGATTACATAGGACTACTATTAATGGCTTCAGCTGGATACGACCCACGAATCGCACCTCAAGTATACGAGAAGCTAGGAAAGATATCCGGTGCATCCGGAGGACTTGAAGACTATCTTTCAACTCACCCGTCTGGGAAAACGAGAGCTCAGTTATTAGCTCGGGCTCATATTATGGAGGAAGCGATCAATTTGTACCGTGAAGCTTCGGGCGGGCGGGCAGTTGAAGGGTTTCTGTAA MASWNRQSRFVYNTFKSLSSKLLPKTPIQSPSPRLNSSSSSLFYNQFKPSRLFGSPSISGNFNGFKQNQTSSLFSGIITRRNYYVDSNQIRHFKPRGFKSWFQNPRHMFIVVVVGSGVVITVYFGNCEIVPYTKRKHLVLLSKSIERSIGESEFEKMKKEMKGKILPAIHPDSVKIRLISKDIIQSLERGISHEQVWSDPGYAVEGGSTHNEVDGGETLRAFTEVEEENGVENWRKGEEMLDDTWVKDSRKKGEENKAKAYTDHLEGMNWEVLVVDEPVVNAFCLPGGKIVVYTGLLRHFQSDVEVATIIGHEVGHAVARHSAEQITKNLWMAILQLILYQFIAPDFANAMSNLLLRLPFSRKMEIEADYIGLLLMASAGYDPRIAPQVYEKLGKISGASGGLEDYLSTHPSGKTRAQLLARAHIMEEAINLYREASGGRAVEGFL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo12922.1 vs. NCBI nr
Match: gi|902230740|gb|KNA21971.1| (hypothetical protein SOVF_038380 [Spinacia oleracea]) HSP 1 Score: 876.7 bits (2264), Expect = 1.700e-251 Identity = 439/446 (98.43%), Postives = 445/446 (99.78%), Query Frame = 1
BLAST of Spo12922.1 vs. NCBI nr
Match: gi|731363857|ref|XP_010693659.1| (PREDICTED: uncharacterized protein LOC104906584 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 686.0 bits (1769), Expect = 4.300e-194 Identity = 348/448 (77.68%), Postives = 395/448 (88.17%), Query Frame = 1
BLAST of Spo12922.1 vs. NCBI nr
Match: gi|225455604|ref|XP_002269952.1| (PREDICTED: mitochondrial metalloendopeptidase OMA1 [Vitis vinifera]) HSP 1 Score: 528.5 bits (1360), Expect = 1.100e-146 Identity = 272/444 (61.26%), Postives = 337/444 (75.90%), Query Frame = 1
BLAST of Spo12922.1 vs. NCBI nr
Match: gi|661891397|emb|CDP05279.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 527.3 bits (1357), Expect = 2.600e-146 Identity = 269/451 (59.65%), Postives = 339/451 (75.17%), Query Frame = 1
BLAST of Spo12922.1 vs. NCBI nr
Match: gi|920714813|gb|KOM54901.1| (hypothetical protein LR48_Vigan10g079300 [Vigna angularis]) HSP 1 Score: 526.2 bits (1354), Expect = 5.700e-146 Identity = 270/449 (60.13%), Postives = 336/449 (74.83%), Query Frame = 1
BLAST of Spo12922.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RR04_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_038380 PE=4 SV=1) HSP 1 Score: 876.7 bits (2264), Expect = 1.200e-251 Identity = 439/446 (98.43%), Postives = 445/446 (99.78%), Query Frame = 1
BLAST of Spo12922.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BC43_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g067450 PE=4 SV=1) HSP 1 Score: 686.0 bits (1769), Expect = 3.000e-194 Identity = 348/448 (77.68%), Postives = 395/448 (88.17%), Query Frame = 1
BLAST of Spo12922.1 vs. UniProtKB/TrEMBL
Match: F6HAI9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0022g02120 PE=3 SV=1) HSP 1 Score: 528.5 bits (1360), Expect = 8.000e-147 Identity = 272/444 (61.26%), Postives = 337/444 (75.90%), Query Frame = 1
BLAST of Spo12922.1 vs. UniProtKB/TrEMBL
Match: A0A068UAR9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00020266001 PE=4 SV=1) HSP 1 Score: 527.3 bits (1357), Expect = 1.800e-146 Identity = 269/451 (59.65%), Postives = 339/451 (75.17%), Query Frame = 1
BLAST of Spo12922.1 vs. UniProtKB/TrEMBL
Match: A0A0L9VIL7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g079300 PE=4 SV=1) HSP 1 Score: 526.2 bits (1354), Expect = 4.000e-146 Identity = 270/449 (60.13%), Postives = 336/449 (74.83%), Query Frame = 1
BLAST of Spo12922.1 vs. ExPASy Swiss-Prot
Match: OMA1_SCHPO (Mitochondrial metalloendopeptidase OMA1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=oma1 PE=3 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 5.300e-27 Identity = 68/179 (37.99%), Postives = 100/179 (55.87%), Query Frame = 1
BLAST of Spo12922.1 vs. ExPASy Swiss-Prot
Match: OMA1_YEAST (Mitochondrial metalloendopeptidase OMA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OMA1 PE=1 SV=2) HSP 1 Score: 115.9 bits (289), Expect = 1.100e-24 Identity = 63/168 (37.50%), Postives = 108/168 (64.29%), Query Frame = 1
BLAST of Spo12922.1 vs. ExPASy Swiss-Prot
Match: OMA1_DANRE (Metalloendopeptidase OMA1, mitochondrial OS=Danio rerio GN=oma1 PE=3 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 2.800e-20 Identity = 65/182 (35.71%), Postives = 98/182 (53.85%), Query Frame = 1
BLAST of Spo12922.1 vs. ExPASy Swiss-Prot
Match: OMA1_HUMAN (Metalloendopeptidase OMA1, mitochondrial OS=Homo sapiens GN=OMA1 PE=1 SV=1) HSP 1 Score: 95.1 bits (235), Expect = 2.000e-18 Identity = 73/232 (31.47%), Postives = 114/232 (49.14%), Query Frame = 1
BLAST of Spo12922.1 vs. ExPASy Swiss-Prot
Match: OMA1_BOVIN (Metalloendopeptidase OMA1, mitochondrial OS=Bos taurus GN=OMA1 PE=2 SV=2) HSP 1 Score: 93.2 bits (230), Expect = 7.700e-18 Identity = 73/232 (31.47%), Postives = 110/232 (47.41%), Query Frame = 1
BLAST of Spo12922.1 vs. TAIR (Arabidopsis)
Match: AT5G51740.1 (Peptidase family M48 family protein) HSP 1 Score: 463.8 bits (1192), Expect = 1.200e-130 Identity = 250/458 (54.59%), Postives = 332/458 (72.49%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo12922.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo12922.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo12922.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo12922.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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