Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCTTTTTAAGCCCAAAATAGAGGATTTTGGTGTGAAATTTTCGGCCCAAGCTTAGGCCCGAAACGTCCTATGTTTTACAGCCAAAGCCCGACACAACCCATGATATCGTAACCCTCTTTCAGCAGCCACATTTCCTTCTTCCTTCACCATATTCAGCCGCTTCACACTCTCTCTCCCAACTCGACCAGCAAAATGGTAAACATTTTCTCTCTTCTCTTTCCTCTTTCTCTTTCTCTTTCTCTCTTCAATTCAATGTTTTACAATTAGTATTCTTTTATTCATCTGCAGATCTAGTAATCCCTGTAATTGTTTTGTTTTTCTTGTTCTGTTTTGCAATCAATTGAATTGGATTTCATGTTTTTTTGCTGTTTTATATCCGTGTTTGTCGCTAATTAGTTCACATTAATGTATTTGTTAGCGAATTAATCTTATGAATTTGAGGATTTTAGGGTATTATTAGCTCGAAGCATGTATATAGATTTAACGAGATGAAAATAATGTGAACTGGAAACCTAGAATGACGTGAATTTGAAGGTTTTTGTATTTTATGCCTGGGTAAATGAATTTTATAGTATTGTTAATTCTAAGCATTTATTTTGATTTATCCAGATGAAAATGCGAAGTAGAATGATGGAAAAGTGGTGTATTTTTAGAGTGCTAGAATTAGTGTTTTTAGGGTTTATTTGTTTCGTTGAATGTATTCTTGAACTATATAGGGTTTATTTGTTTTTAGGGCTCTAATTCTAGCACTATAGTTCAAGCTAGTGCTAGAATTACTGTTTTTAGGGTTTATTTAGTGTTTTTAGGGTTTATTTGTTTCACTGGGGATTTAGAATTATATAGGTTAGAGGTTTCTGAATGTTAGTAAAGAGACATAAAGCTTACCATTTGATGGGATATTGGGATGTAGTCAACAGCTGGTTGATTGTTGGTTTGTGTTCAATAATCTAGCAGCTTCTTTGGGTGATTTTTACCTGATTGTTGTATGTTTCAACTATGAAGATTAACAGGTCATATATCTTGCATTGTTTTTTTTCCTGTAATGTTATTGTGTGTGGAATGATGTGATTTAATGTTAAAACTGTTAGTTTAGTATATGGGTTTCCTAATGAATATGGTTGTTTTGTTTGCTTGGCAGGCCCCGGTTGCAAAAAAAGGTGCGAAGGCTGCAGTTGGAAAGAAGAAGACTGTAAGTTTGATTAAGTTTTTACACTTTGCTGCACGAGTCCTCTTTCAAATTCGCTTAATTTTATTGAACTCGTGATTTTTATTTGGGTGGATGATTGTTAAAATAAAGAATAAGTTCTGTCGATTGTTTTACGAACTGCAAGTTCTAGCTAGGTTTTTGGTGCACAGATGTCTATTAAATCCCTTAATTCTTACATTTCCTCTTATGATGTTCGTGATCAATGTTGCTTGATTCGCTAGTATAAAATTGGGTACGGGTTCACAATTCGCTACATAATGTGCTAAATTAGACCAAAATTGTGCTGTTTTCATGTTATAATTCGCTTCTTTGGTTCGCGGTTCGTAGGATGATTAGAGAATTAGGTAACACTGTTCGTGATGATTAAGCAATATCAGTTTCTTGCTTAGGAGTTATATGTCTTAATTCCTTAGTATTTATTAGGTGTAAGGTATTACTGCCCGACACTAGAATGTTCTCTCAGGGATCATGTCTTGTAGCTTTATCATTCATTTTTTCTGGAGGAAATGCCATTGACATAGAAAATAACCTCATACCGTTGTTTGAAAGTGTCATGAGTTTATGGAAATAAGTAGTTTCAAGATTTTTCTAGTTTTCTAAATGGTAAATATCTACTGCAGGAGAAAACCACAAACCCTTTGTTTGAGAAGCGACCCAAGCAGTTTGGAATTGGGGGTGCTCTTCCACCAAAGAAGGATCTCACCCGGTTTATCAAATGGCCAAAGGTTGTTCAACTTCAGAGGAAGAGAAGGATTTTGAAGCAGCGTTTGAAGGTTCCCCCAGCTATTAACCAGTTCACTAAGGCTCTTGACAAGAACCTTGGTAATTTTTCCCGTTTATATGGTTTCCTTGAAACAAATGTTATAGTATGAGTAATATTCCATCTTTTTTTCACTGTTTACCCGTTTCTAAATCTACTTTTCTCTTGCAGCATCAAACCTTTTCAAGTTGTTGCTCAAATATAGACCTGAAGACAAGGCTGCTAAGAAGGAAAGGCTTTTGAAAGCCGCTCAGGCAGAAGCTGAAGGAAAGAAGCCAGAGAGCAAGAAACCAGTTGTAGTGAAATATGGTCTTAACCACATCACTTACCTGATTGAACAGGTAGCGTATCTGGATTATTTTGATACATTACTGTAGCTGTATACGTGGCGTTTGGTTCACGTAGTGGTATGGGTTTGGAATTAGGAATGAAACCATGGCGGTACGGGTATGGAACTTGATTCCTAATACCATGTGTTTGGTTATATCCGGAAATACATATTCCTCTTTTATTTGATACCTAAAGGTTTAGTATGAGACTATGATCCCTACCCACCTCCCCTTTTGGGTTTCTAAACCCATACCTTCTGTTTCTAAACCCCATACCTTCTGTGTTATAGGTATTAGTTTAGAAAATGAAATTTATAAACCAAACACATGGCATGGGTTTTGCCCAATCCAAACCCATACCTCATACCAAAAATCTGCTAACCAAACGCCCCCTTACTTTTATATTCACTGATCAAATGGGTTGTTGTAAAATTGGTATTGCAGGGAAAGGCTCAGATGGTGGTCATTGCCCATGACGTCGATCCAATTGAGCTTGTAGTATGGCTTCCTGCCTTGTGCCGTAAGATGGAGGTTCCATACTGTATTGTGAAGGGAAAGGCTCGCCTTGGAACGGTGATTACTCTTCTACTATAAATTTTATGCTAGCTTAATTTGTAATGGCATAACATAAATCTGATGCAAATGTTTTGTATCTTGAGCAGGTTGTCCACAAGAAGACAGCTGCCGTTCTTTGTCTGACATCTGTGAAGAACGAGGACAAAATGGAGTTCAGCAGAATCGTTGAAGCTGTCAAGGTAATAATTTTCCCTGATGCCTATTTAAATTGATCATGATATATCTTATGATCAGCAACATCTTTTTACGATCTTGGTTATGGGTCAAAAATGGTGTGGTAAGACTGTAAGAGTAGGATCCGCCATTTTTTAGGGGGTTTATCCTAGATTGAAGGAGGTTTAATAAGAAAGCAGGAGAATTTTGGTAAAGAGATCAATTAAATTTGATGCTGCTAAACTTTTGGAAAGATTCTGGGATTTTTTGAGTGAGAAAAAGCAGGGAAATTGATCGAGAGAATTTGTAGAGAGAGAGAGGGGTGGGGTTTGCTGAAACAGAGACGCGGTTTATTTGTTGGAGGGTATTTTTTCTTTGAAATATCAAAGAAAAGGCCAGATTAATATGATTAATGGGGTGTTTTTATTTCAATTTGATTTGGTATGAAATAAAGTTTTTTGTCTTATGGTAACAAATGAAAGAGGAGGATTAAGTTTTTTGTCGCTTTGGTAGTATAGAATTAAAGATGTGCATATTAAACCTGATCATCTATATCCCGGCCTGAAAAAGCGTGGTTTGGACAGCCTCATATACGCTCTTTAGACCAAAACCCGAACCCGTCCCGAAAAAGACTGAAAACCCTGTATCGACCCAAAAGCCCACACCCAATTTATGGGTTTGGGCACAAGTTCTCGTGGTAAAGCCCGGCCCGGCCATGATCATCTCTAATGCATATGAATTTCCCTGTGTTTCACAGGCTAACTTCAATGACAAGTATGAAGAGCACAGGAAGAAGTGGGGAGGTGGTATTATGGGTTCCAAATCGCAGGCGAAAATGAAGGCAAGAGAGAGAGTCTTAGCCAAGGAAGCTGCCCAGAGGTTGAATTAGGGCAAAAACTCTTTTTGTTGCAGAATTATTATTAGCTTTCTTTTTGCTAATCTACTTTTTGTTACATTATGAATTCAGAAATTGATACTTTAGTTTGTTCGGTTCACAAATAGTGTTTATAATCTCAAGATAATCCATTATTATTTGTCCCATTAAAACGAAGTTTGAGAATGATCAATATAAACCCAACCCGGCCTGGCCCGGCAGAAAATTTGGTGGGTTTGGGCAGAATTTTAGGCCCGATTTTCGGACTTGGCGC TCTTTTTAAGCCCAAAATAGAGGATTTTGGTGTGAAATTTTCGGCCCAAGCTTAGGCCCGAAACGTCCTATGTTTTACAGCCAAAGCCCGACACAACCCATGATATCGTAACCCTCTTTCAGCAGCCACATTTCCTTCTTCCTTCACCATATTCAGCCGCTTCACACTCTCTCTCCCAACTCGACCAGCAAAATGGCCCCGGTTGCAAAAAAAGGTGCGAAGGCTGCAGTTGGAAAGAAGAAGACTGAGAAAACCACAAACCCTTTGTTTGAGAAGCGACCCAAGCAGTTTGGAATTGGGGGTGCTCTTCCACCAAAGAAGGATCTCACCCGGTTTATCAAATGGCCAAAGGTTGTTCAACTTCAGAGGAAGAGAAGGATTTTGAAGCAGCGTTTGAAGGTTCCCCCAGCTATTAACCAGTTCACTAAGGCTCTTGACAAGAACCTTGCATCAAACCTTTTCAAGTTGTTGCTCAAATATAGACCTGAAGACAAGGCTGCTAAGAAGGAAAGGCTTTTGAAAGCCGCTCAGGCAGAAGCTGAAGGAAAGAAGCCAGAGAGCAAGAAACCAGTTGTAGTGAAATATGGTCTTAACCACATCACTTACCTGATTGAACAGGGAAAGGCTCAGATGGTGGTCATTGCCCATGACGTCGATCCAATTGAGCTTGTAGTATGGCTTCCTGCCTTGTGCCGTAAGATGGAGGTTCCATACTGTATTGTGAAGGGAAAGGCTCGCCTTGGAACGGTTGTCCACAAGAAGACAGCTGCCGTTCTTTGTCTGACATCTGTGAAGAACGAGGACAAAATGGAGTTCAGCAGAATCGTTGAAGCTGTCAAGGCTAACTTCAATGACAAGTATGAAGAGCACAGGAAGAAGTGGGGAGGTGGTATTATGGGTTCCAAATCGCAGGCGAAAATGAAGGCAAGAGAGAGAGTCTTAGCCAAGGAAGCTGCCCAGAGGTTGAATTAGGGCAAAAACTCTTTTTGTTGCAGAATTATTATTAGCTTTCTTTTTGCTAATCTACTTTTTGTTACATTATGAATTCAGAAATTGATACTTTAGTTTGTTCGGTTCACAAATAGTGTTTATAATCTCAAGATAATCCATTATTATTTGTCCCATTAAAACGAAGTTTGAGAATGATCAATATAAACCCAACCCGGCCTGGCCCGGCAGAAAATTTGGTGGGTTTGGGCAGAATTTTAGGCCCGATTTTCGGACTTGGCGC ATGGCCCCGGTTGCAAAAAAAGGTGCGAAGGCTGCAGTTGGAAAGAAGAAGACTGAGAAAACCACAAACCCTTTGTTTGAGAAGCGACCCAAGCAGTTTGGAATTGGGGGTGCTCTTCCACCAAAGAAGGATCTCACCCGGTTTATCAAATGGCCAAAGGTTGTTCAACTTCAGAGGAAGAGAAGGATTTTGAAGCAGCGTTTGAAGGTTCCCCCAGCTATTAACCAGTTCACTAAGGCTCTTGACAAGAACCTTGCATCAAACCTTTTCAAGTTGTTGCTCAAATATAGACCTGAAGACAAGGCTGCTAAGAAGGAAAGGCTTTTGAAAGCCGCTCAGGCAGAAGCTGAAGGAAAGAAGCCAGAGAGCAAGAAACCAGTTGTAGTGAAATATGGTCTTAACCACATCACTTACCTGATTGAACAGGGAAAGGCTCAGATGGTGGTCATTGCCCATGACGTCGATCCAATTGAGCTTGTAGTATGGCTTCCTGCCTTGTGCCGTAAGATGGAGGTTCCATACTGTATTGTGAAGGGAAAGGCTCGCCTTGGAACGGTTGTCCACAAGAAGACAGCTGCCGTTCTTTGTCTGACATCTGTGAAGAACGAGGACAAAATGGAGTTCAGCAGAATCGTTGAAGCTGTCAAGGCTAACTTCAATGACAAGTATGAAGAGCACAGGAAGAAGTGGGGAGGTGGTATTATGGGTTCCAAATCGCAGGCGAAAATGAAGGCAAGAGAGAGAGTCTTAGCCAAGGAAGCTGCCCAGAGGTTGAATTAG MAPVAKKGAKAAVGKKKTEKTTNPLFEKRPKQFGIGGALPPKKDLTRFIKWPKVVQLQRKRRILKQRLKVPPAINQFTKALDKNLASNLFKLLLKYRPEDKAAKKERLLKAAQAEAEGKKPESKKPVVVKYGLNHITYLIEQGKAQMVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGTVVHKKTAAVLCLTSVKNEDKMEFSRIVEAVKANFNDKYEEHRKKWGGGIMGSKSQAKMKARERVLAKEAAQRLN Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo12926.1 vs. NCBI nr
Match: gi|902230746|gb|KNA21977.1| (hypothetical protein SOVF_038440 [Spinacia oleracea]) HSP 1 Score: 494.2 bits (1271), Expect = 1.400e-136 Identity = 257/259 (99.23%), Postives = 258/259 (99.61%), Query Frame = 1
BLAST of Spo12926.1 vs. NCBI nr
Match: gi|902220854|gb|KNA18715.1| (hypothetical protein SOVF_068210 [Spinacia oleracea]) HSP 1 Score: 492.7 bits (1267), Expect = 4.000e-136 Identity = 256/259 (98.84%), Postives = 257/259 (99.23%), Query Frame = 1
BLAST of Spo12926.1 vs. NCBI nr
Match: gi|731316098|ref|XP_010694194.1| (PREDICTED: 60S ribosomal protein L7a-2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 461.8 bits (1187), Expect = 7.700e-127 Identity = 239/259 (92.28%), Postives = 247/259 (95.37%), Query Frame = 1
BLAST of Spo12926.1 vs. NCBI nr
Match: gi|629118725|gb|KCW83215.1| (hypothetical protein EUGRSUZ_B00159 [Eucalyptus grandis]) HSP 1 Score: 432.2 bits (1110), Expect = 6.500e-118 Identity = 217/255 (85.10%), Postives = 243/255 (95.29%), Query Frame = 1
BLAST of Spo12926.1 vs. NCBI nr
Match: gi|702256192|ref|XP_010026802.1| (PREDICTED: 60S ribosomal protein L7a-like [Eucalyptus grandis]) HSP 1 Score: 432.2 bits (1110), Expect = 6.500e-118 Identity = 217/255 (85.10%), Postives = 243/255 (95.29%), Query Frame = 1
BLAST of Spo12926.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RT21_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_038440 PE=4 SV=1) HSP 1 Score: 494.2 bits (1271), Expect = 9.700e-137 Identity = 257/259 (99.23%), Postives = 258/259 (99.61%), Query Frame = 1
BLAST of Spo12926.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RGW6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_068210 PE=4 SV=1) HSP 1 Score: 492.7 bits (1267), Expect = 2.800e-136 Identity = 256/259 (98.84%), Postives = 257/259 (99.23%), Query Frame = 1
BLAST of Spo12926.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D311_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g028190 PE=4 SV=1) HSP 1 Score: 461.8 bits (1187), Expect = 5.300e-127 Identity = 239/259 (92.28%), Postives = 247/259 (95.37%), Query Frame = 1
BLAST of Spo12926.1 vs. UniProtKB/TrEMBL
Match: A0A059CZ22_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00159 PE=4 SV=1) HSP 1 Score: 432.2 bits (1110), Expect = 4.500e-118 Identity = 217/255 (85.10%), Postives = 243/255 (95.29%), Query Frame = 1
BLAST of Spo12926.1 vs. UniProtKB/TrEMBL
Match: V7BLC9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G274200g PE=4 SV=1) HSP 1 Score: 431.4 bits (1108), Expect = 7.700e-118 Identity = 219/261 (83.91%), Postives = 244/261 (93.49%), Query Frame = 1
BLAST of Spo12926.1 vs. ExPASy Swiss-Prot
Match: RL7A1_ORYSJ (60S ribosomal protein L7a-1 OS=Oryza sativa subsp. japonica GN=RPL7A-1 PE=2 SV=1) HSP 1 Score: 425.2 bits (1092), Expect = 5.000e-118 Identity = 216/259 (83.40%), Postives = 244/259 (94.21%), Query Frame = 1
BLAST of Spo12926.1 vs. ExPASy Swiss-Prot
Match: RL7A2_ORYSJ (60S ribosomal protein L7a-2 OS=Oryza sativa subsp. japonica GN=RPL7A-2 PE=2 SV=1) HSP 1 Score: 425.2 bits (1092), Expect = 5.000e-118 Identity = 216/259 (83.40%), Postives = 244/259 (94.21%), Query Frame = 1
BLAST of Spo12926.1 vs. ExPASy Swiss-Prot
Match: RL7A2_ARATH (60S ribosomal protein L7a-2 OS=Arabidopsis thaliana GN=RPL7AB PE=1 SV=1) HSP 1 Score: 423.7 bits (1088), Expect = 1.400e-117 Identity = 216/259 (83.40%), Postives = 241/259 (93.05%), Query Frame = 1
BLAST of Spo12926.1 vs. ExPASy Swiss-Prot
Match: RL7A1_ARATH (60S ribosomal protein L7a-1 OS=Arabidopsis thaliana GN=RPL7AA PE=1 SV=2) HSP 1 Score: 422.9 bits (1086), Expect = 2.500e-117 Identity = 213/259 (82.24%), Postives = 241/259 (93.05%), Query Frame = 1
BLAST of Spo12926.1 vs. ExPASy Swiss-Prot
Match: RL8_SCHPO (60S ribosomal protein L8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl8 PE=1 SV=3) HSP 1 Score: 285.4 bits (729), Expect = 6.100e-76 Identity = 155/254 (61.02%), Postives = 191/254 (75.20%), Query Frame = 1
BLAST of Spo12926.1 vs. TAIR (Arabidopsis)
Match: AT3G62870.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein) HSP 1 Score: 423.7 bits (1088), Expect = 8.100e-119 Identity = 216/259 (83.40%), Postives = 241/259 (93.05%), Query Frame = 1
BLAST of Spo12926.1 vs. TAIR (Arabidopsis)
Match: AT2G47610.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein) HSP 1 Score: 422.9 bits (1086), Expect = 1.400e-118 Identity = 213/259 (82.24%), Postives = 241/259 (93.05%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo12926.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo12926.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo12926.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo12926.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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