Spo12960 (gene)

Overview
NameSpo12960
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionSugar isomerase (SIS) family protein
Locationchr3 : 2103359 .. 2103979 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAAAACAAGCCACTCAACCTCATCAATGGCCACACAAATCTGCAACCAAATAGCCACCATATTCACCACCCCCACCACCACCGCGCCACCGTTAGACCTCCTAGTGGACCAAATAACAACAACCGCGGCCCAAAACGGCCGCATCTTTGTCTACGGAGTGGGCCGCGAAGGGCTCATGTTGAAAGCCCTTTGTATGCGACTAGCCCATTTGGGCCTCTCAGCCCACTGTGTATTTGACATGACTACTCCCCCTATTGGGCCCACTGACCTTTTAATCGCCTCAGCTGGGCCTGGAGGATTCTCCACCGTTGATGCAATCTGTGGGGTTGCTAAATCCAACGGTGCTTGTGTGTTGCTTCTTACTGCTCAACCTGAAAGTGGATCCTCTGTGGAGTATGCCACCGTTGTGGCTCATGTACCTGCTCAGACAATGGCTGATGATGATCATGATCATCAAGGAGGACACGTGGAGGAATCTAGACCGTTGTTGCTTCCTATGGGAAGTCTTTATGAGGGTGCTTTGTTTGTGTTGTTTGAAATGGTTGTGTTTAGGGTTGGTGATGTTTTGGGCCAAACACCTGAAGTTGTGAGGGCAAGGCACACTAATTTAGAATGA

mRNA sequence

ATGGCTAAAACAAGCCACTCAACCTCATCAATGGCCACACAAATCTGCAACCAAATAGCCACCATATTCACCACCCCCACCACCACCGCGCCACCGTTAGACCTCCTAGTGGACCAAATAACAACAACCGCGGCCCAAAACGGCCGCATCTTTGTCTACGGAGTGGGCCGCGAAGGGCTCATGTTGAAAGCCCTTTGTATGCGACTAGCCCATTTGGGCCTCTCAGCCCACTGTGTATTTGACATGACTACTCCCCCTATTGGGCCCACTGACCTTTTAATCGCCTCAGCTGGGCCTGGAGGATTCTCCACCGTTGATGCAATCTGTGGGGTTGCTAAATCCAACGGTGCTTGTGTGTTGCTTCTTACTGCTCAACCTGAAAGTGGATCCTCTGTGGAGTATGCCACCGTTGTGGCTCATGTACCTGCTCAGACAATGGCTGATGATGATCATGATCATCAAGGAGGACACGTGGAGGAATCTAGACCGTTGTTGCTTCCTATGGGAAGTCTTTATGAGGGTGCTTTGTTTGTGTTGTTTGAAATGGTTGTGTTTAGGGTTGGTGATGTTTTGGGCCAAACACCTGAAGTTGTGAGGGCAAGGCACACTAATTTAGAATGA

Coding sequence (CDS)

ATGGCTAAAACAAGCCACTCAACCTCATCAATGGCCACACAAATCTGCAACCAAATAGCCACCATATTCACCACCCCCACCACCACCGCGCCACCGTTAGACCTCCTAGTGGACCAAATAACAACAACCGCGGCCCAAAACGGCCGCATCTTTGTCTACGGAGTGGGCCGCGAAGGGCTCATGTTGAAAGCCCTTTGTATGCGACTAGCCCATTTGGGCCTCTCAGCCCACTGTGTATTTGACATGACTACTCCCCCTATTGGGCCCACTGACCTTTTAATCGCCTCAGCTGGGCCTGGAGGATTCTCCACCGTTGATGCAATCTGTGGGGTTGCTAAATCCAACGGTGCTTGTGTGTTGCTTCTTACTGCTCAACCTGAAAGTGGATCCTCTGTGGAGTATGCCACCGTTGTGGCTCATGTACCTGCTCAGACAATGGCTGATGATGATCATGATCATCAAGGAGGACACGTGGAGGAATCTAGACCGTTGTTGCTTCCTATGGGAAGTCTTTATGAGGGTGCTTTGTTTGTGTTGTTTGAAATGGTTGTGTTTAGGGTTGGTGATGTTTTGGGCCAAACACCTGAAGTTGTGAGGGCAAGGCACACTAATTTAGAATGA

Protein sequence

MAKTSHSTSSMATQICNQIATIFTTPTTTAPPLDLLVDQITTTAAQNGRIFVYGVGREGLMLKALCMRLAHLGLSAHCVFDMTTPPIGPTDLLIASAGPGGFSTVDAICGVAKSNGACVLLLTAQPESGSSVEYATVVAHVPAQTMADDDHDHQGGHVEESRPLLLPMGSLYEGALFVLFEMVVFRVGDVLGQTPEVVRARHTNLE
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo12960.1Spo12960.1mRNA


Homology
[Close]
BLAST of Spo12960.1 vs. NCBI nr
Match: gi|902235433|gb|KNA23903.1| (hypothetical protein SOVF_019470 [Spinacia oleracea])

HSP 1 Score: 402.1 bits (1032), Expect = 5.700e-109
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 1 

		  

Query: 1   MAKTSHSTSSMATQICNQIATIFTTPTTTAPPLDLLVDQITTTAAQNGRIFVYGVGREGL 60
           MAKTSHSTSSMATQICNQIATIFTTPTTTAPPLDLLVDQITTTAAQNGRIFVYGVGREGL
Sbjct: 1   MAKTSHSTSSMATQICNQIATIFTTPTTTAPPLDLLVDQITTTAAQNGRIFVYGVGREGL 60

Query: 61  MLKALCMRLAHLGLSAHCVFDMTTPPIGPTDLLIASAGPGGFSTVDAICGVAKSNGACVL 120
           MLKALCMRLAHLGLSAHCVFDMTTPPIGPTDLLIASAGPGGFSTVDAICGVAKSNGACVL
Sbjct: 61  MLKALCMRLAHLGLSAHCVFDMTTPPIGPTDLLIASAGPGGFSTVDAICGVAKSNGACVL 120

Query: 121 LLTAQPESGSSVEYATVVAHVPAQTMADDDHDHQGGHVEESRPLLLPMGSLYEGALFVLF 180
           LLTAQPESGSSVEYATVVAHVPAQTMADDDHDHQGGHVEESRPLLLPMGSLYEGALFVLF
Sbjct: 121 LLTAQPESGSSVEYATVVAHVPAQTMADDDHDHQGGHVEESRPLLLPMGSLYEGALFVLF 180

Query: 181 EMVVFRVGDVLGQTPEVVRARHTNLE 207
           EMVVFRVGDVL QTPEVVRARHTNLE
Sbjct: 181 EMVVFRVGDVLSQTPEVVRARHTNLE 206
[Close]
BLAST of Spo12960.1 vs. NCBI nr
Match: gi|731363640|ref|XP_010693535.1| (PREDICTED: uncharacterized protein LOC104906475 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 334.0 bits (855), Expect = 1.900e-88
Identity = 178/206 (86.41%), Postives = 186/206 (90.29%), Query Frame = 1 

		  

Query: 1   MAKTSHSTSSMATQICNQIATIFTTPTTTAPPLDLLVDQITTTAAQNGRIFVYGVGREGL 60
           MA+ SHS   MATQICNQIATIFT PTTT PPLDLLVDQI+TT AQ GRIFVYGVGREGL
Sbjct: 1   MAERSHS---MATQICNQIATIFTKPTTTPPPLDLLVDQISTTWAQKGRIFVYGVGREGL 60

Query: 61  MLKALCMRLAHLGLSAHCVFDMTTPPIGPTDLLIASAGPGGFSTVDAICGVAKSNGACVL 120
           MLKALCMRLAHLGLS +CVFDMTTPPIGPTDLLIASAGPGGFSTVDAIC VAKSNGA VL
Sbjct: 61  MLKALCMRLAHLGLSVYCVFDMTTPPIGPTDLLIASAGPGGFSTVDAICKVAKSNGARVL 120

Query: 121 LLTAQPESGSSVEYATVVAHVPAQTMADDDHDHQGGHVEESRPLLLPMGSLYEGALFVLF 180
           LLTAQP+ GSSVEYATVVAHVPAQTMAD   DHQ GHV+ESRP LLPMGSLYEG LFVLF
Sbjct: 121 LLTAQPQIGSSVEYATVVAHVPAQTMAD---DHQVGHVDESRP-LLPMGSLYEGVLFVLF 180

Query: 181 EMVVFRVGDVLGQTPEVVRARHTNLE 207
           EMVVF++ D+LGQTPE VRARHTNLE
Sbjct: 181 EMVVFKLADILGQTPEAVRARHTNLE 199
[Close]
BLAST of Spo12960.1 vs. NCBI nr
Match: gi|976926279|gb|KVI10148.1| (Sugar isomerase (SIS) [Cynara cardunculus var. scolymus])

HSP 1 Score: 283.9 bits (725), Expect = 2.300e-73
Identity = 145/203 (71.43%), Postives = 173/203 (85.22%), Query Frame = 1 

		  

Query: 4   TSHSTSSMATQICNQIATIFTTPTTTAPPLDLLVDQITTTAAQNGRIFVYGVGREGLMLK 63
           +S S S++A++ICNQI ++FT PT+T  PLD++V +I   A + G++FVYGVGREGLM+K
Sbjct: 5   SSDSMSALASKICNQINSVFTKPTSTPSPLDVMVKEIAAVAGRRGKVFVYGVGREGLMMK 64

Query: 64  ALCMRLAHLGLSAHCVFDMTTPPIGPTDLLIASAGPGGFSTVDAICGVAKSNGACVLLLT 123
           ALCMRLAHLGLS HCV DMTTPPI  +DLLIASAGPGGFSTVDAICGVAKSNG  VLLLT
Sbjct: 65  ALCMRLAHLGLSTHCVGDMTTPPISSSDLLIASAGPGGFSTVDAICGVAKSNGGRVLLLT 124

Query: 124 AQPESGSSVEYATVVAHVPAQTMADDDHDHQGGHVEESRPLLLPMGSLYEGALFVLFEMV 183
           AQPESGSSV+YA+VVAHVPAQTMADD     GG VE + P LLPMGS+YEG++FVLFEMV
Sbjct: 125 AQPESGSSVKYASVVAHVPAQTMADD-----GGEVEGTTP-LLPMGSIYEGSMFVLFEMV 184

Query: 184 VFRVGDVLGQTPEVVRARHTNLE 207
           VF++G VLG+ P+ +R+RHTNLE
Sbjct: 185 VFKLGSVLGENPDEIRSRHTNLE 201
[Close]
BLAST of Spo12960.1 vs. NCBI nr
Match: gi|698418512|ref|XP_009776310.1| (PREDICTED: uncharacterized protein LOC104225851 [Nicotiana sylvestris])

HSP 1 Score: 282.0 bits (720), Expect = 8.600e-73
Identity = 148/207 (71.50%), Postives = 175/207 (84.54%), Query Frame = 1 

		  

Query: 1   MAKTSHSTSSM-ATQICNQIATIFTTPTTTAPPLDLLVDQITTTAAQNGRIFVYGVGREG 60
           MA+++ + S++ A++ICNQI+++F+   T  P L++LV +IT  A +NG++FVYGVGREG
Sbjct: 1   MAESNPTESTLLASKICNQISSVFSNTATQTPALEVLVQEITAAATRNGKVFVYGVGREG 60

Query: 61  LMLKALCMRLAHLGLSAHCVFDMTTPPIGPTDLLIASAGPGGFSTVDAICGVAKSNGACV 120
           LMLKAL MRL HLGLSAHCVFDM TPPIGP DLLIASAGPGGFSTVDAICGVAKSNGA V
Sbjct: 61  LMLKALSMRLFHLGLSAHCVFDMNTPPIGPPDLLIASAGPGGFSTVDAICGVAKSNGARV 120

Query: 121 LLLTAQPESGSSVEYATVVAHVPAQTMADDDHDHQGGHVEESRPLLLPMGSLYEGALFVL 180
           LLLTAQPESGSSV+YA+VVAH+PAQTMADD+     G  E+ RP LLPMGSLYEGA+ VL
Sbjct: 121 LLLTAQPESGSSVKYASVVAHIPAQTMADDN----AGDAEQDRP-LLPMGSLYEGAMLVL 180

Query: 181 FEMVVFRVGDVLGQTPEVVRARHTNLE 207
           FEMVVF++ DVL Q+PE VR RHTNLE
Sbjct: 181 FEMVVFKLADVLKQSPEAVRTRHTNLE 202
[Close]
BLAST of Spo12960.1 vs. NCBI nr
Match: gi|567858412|ref|XP_006421889.1| (hypothetical protein CICLE_v10007013mg [Citrus clementina])

HSP 1 Score: 278.1 bits (710), Expect = 1.200e-71
Identity = 148/206 (71.84%), Postives = 176/206 (85.44%), Query Frame = 1 

		  

Query: 2   AKTSHSTSSMATQICNQIATIFTTPTTT-APPLDLLVDQITTTAAQNGRIFVYGVGREGL 61
           ++ S S SS+A+QICNQIA+IF+ PT    PPLD++V ++T TA Q G +F+YGVGREGL
Sbjct: 3   SENSSSMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGL 62

Query: 62  MLKALCMRLAHLGLSAHCVFDMTTPPIGPTDLLIASAGPGGFSTVDAICGVAKSNGACVL 121
           MLKALCMRLAHLG+S H VFDMTTPPI   DLLIASAGPGGFSTVDAIC  A+S GA VL
Sbjct: 63  MLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVL 122

Query: 122 LLTAQPESGSSVEYATVVAHVPAQTMADDDHDHQGGHVEESRPLLLPMGSLYEGALFVLF 181
           LLTAQPESGSSV++A+VVA+VPAQTMADDD D QG   E+SRP L+PMGS+YEGA+FVLF
Sbjct: 123 LLTAQPESGSSVKHASVVAYVPAQTMADDD-DEQG--KEKSRP-LMPMGSVYEGAMFVLF 182

Query: 182 EMVVFRVGDVLGQTPEVVRARHTNLE 207
           EMVV+++G+ LGQ+PE VR+RHTNLE
Sbjct: 183 EMVVYKLGEALGQSPEAVRSRHTNLE 204
[Close]
BLAST of Spo12960.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RWR7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_019470 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 4.000e-109
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 1 

		  

Query: 1   MAKTSHSTSSMATQICNQIATIFTTPTTTAPPLDLLVDQITTTAAQNGRIFVYGVGREGL 60
           MAKTSHSTSSMATQICNQIATIFTTPTTTAPPLDLLVDQITTTAAQNGRIFVYGVGREGL
Sbjct: 1   MAKTSHSTSSMATQICNQIATIFTTPTTTAPPLDLLVDQITTTAAQNGRIFVYGVGREGL 60

Query: 61  MLKALCMRLAHLGLSAHCVFDMTTPPIGPTDLLIASAGPGGFSTVDAICGVAKSNGACVL 120
           MLKALCMRLAHLGLSAHCVFDMTTPPIGPTDLLIASAGPGGFSTVDAICGVAKSNGACVL
Sbjct: 61  MLKALCMRLAHLGLSAHCVFDMTTPPIGPTDLLIASAGPGGFSTVDAICGVAKSNGACVL 120

Query: 121 LLTAQPESGSSVEYATVVAHVPAQTMADDDHDHQGGHVEESRPLLLPMGSLYEGALFVLF 180
           LLTAQPESGSSVEYATVVAHVPAQTMADDDHDHQGGHVEESRPLLLPMGSLYEGALFVLF
Sbjct: 121 LLTAQPESGSSVEYATVVAHVPAQTMADDDHDHQGGHVEESRPLLLPMGSLYEGALFVLF 180

Query: 181 EMVVFRVGDVLGQTPEVVRARHTNLE 207
           EMVVFRVGDVL QTPEVVRARHTNLE
Sbjct: 181 EMVVFRVGDVLSQTPEVVRARHTNLE 206
[Close]
BLAST of Spo12960.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BDW0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g066840 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.300e-88
Identity = 178/206 (86.41%), Postives = 186/206 (90.29%), Query Frame = 1 

		  

Query: 1   MAKTSHSTSSMATQICNQIATIFTTPTTTAPPLDLLVDQITTTAAQNGRIFVYGVGREGL 60
           MA+ SHS   MATQICNQIATIFT PTTT PPLDLLVDQI+TT AQ GRIFVYGVGREGL
Sbjct: 1   MAERSHS---MATQICNQIATIFTKPTTTPPPLDLLVDQISTTWAQKGRIFVYGVGREGL 60

Query: 61  MLKALCMRLAHLGLSAHCVFDMTTPPIGPTDLLIASAGPGGFSTVDAICGVAKSNGACVL 120
           MLKALCMRLAHLGLS +CVFDMTTPPIGPTDLLIASAGPGGFSTVDAIC VAKSNGA VL
Sbjct: 61  MLKALCMRLAHLGLSVYCVFDMTTPPIGPTDLLIASAGPGGFSTVDAICKVAKSNGARVL 120

Query: 121 LLTAQPESGSSVEYATVVAHVPAQTMADDDHDHQGGHVEESRPLLLPMGSLYEGALFVLF 180
           LLTAQP+ GSSVEYATVVAHVPAQTMAD   DHQ GHV+ESRP LLPMGSLYEG LFVLF
Sbjct: 121 LLTAQPQIGSSVEYATVVAHVPAQTMAD---DHQVGHVDESRP-LLPMGSLYEGVLFVLF 180

Query: 181 EMVVFRVGDVLGQTPEVVRARHTNLE 207
           EMVVF++ D+LGQTPE VRARHTNLE
Sbjct: 181 EMVVFKLADILGQTPEAVRARHTNLE 199
[Close]
BLAST of Spo12960.1 vs. UniProtKB/TrEMBL
Match: A0A103YJD8_CYNCS (Sugar isomerase (SIS) OS=Cynara cardunculus var. scolymus GN=Ccrd_011472 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.600e-73
Identity = 145/203 (71.43%), Postives = 173/203 (85.22%), Query Frame = 1 

		  

Query: 4   TSHSTSSMATQICNQIATIFTTPTTTAPPLDLLVDQITTTAAQNGRIFVYGVGREGLMLK 63
           +S S S++A++ICNQI ++FT PT+T  PLD++V +I   A + G++FVYGVGREGLM+K
Sbjct: 5   SSDSMSALASKICNQINSVFTKPTSTPSPLDVMVKEIAAVAGRRGKVFVYGVGREGLMMK 64

Query: 64  ALCMRLAHLGLSAHCVFDMTTPPIGPTDLLIASAGPGGFSTVDAICGVAKSNGACVLLLT 123
           ALCMRLAHLGLS HCV DMTTPPI  +DLLIASAGPGGFSTVDAICGVAKSNG  VLLLT
Sbjct: 65  ALCMRLAHLGLSTHCVGDMTTPPISSSDLLIASAGPGGFSTVDAICGVAKSNGGRVLLLT 124

Query: 124 AQPESGSSVEYATVVAHVPAQTMADDDHDHQGGHVEESRPLLLPMGSLYEGALFVLFEMV 183
           AQPESGSSV+YA+VVAHVPAQTMADD     GG VE + P LLPMGS+YEG++FVLFEMV
Sbjct: 125 AQPESGSSVKYASVVAHVPAQTMADD-----GGEVEGTTP-LLPMGSIYEGSMFVLFEMV 184

Query: 184 VFRVGDVLGQTPEVVRARHTNLE 207
           VF++G VLG+ P+ +R+RHTNLE
Sbjct: 185 VFKLGSVLGENPDEIRSRHTNLE 201
[Close]
BLAST of Spo12960.1 vs. UniProtKB/TrEMBL
Match: A0A067EY09_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028777mg PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 8.700e-72
Identity = 148/206 (71.84%), Postives = 176/206 (85.44%), Query Frame = 1 

		  

Query: 2   AKTSHSTSSMATQICNQIATIFTTPTTT-APPLDLLVDQITTTAAQNGRIFVYGVGREGL 61
           ++ S S SS+A+QICNQIA+IF+ PT    PPLD++V ++T TA Q G +F+YGVGREGL
Sbjct: 3   SENSSSMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGL 62

Query: 62  MLKALCMRLAHLGLSAHCVFDMTTPPIGPTDLLIASAGPGGFSTVDAICGVAKSNGACVL 121
           MLKALCMRLAHLG+S H VFDMTTPPI   DLLIASAGPGGFSTVDAIC  A+S GA VL
Sbjct: 63  MLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVL 122

Query: 122 LLTAQPESGSSVEYATVVAHVPAQTMADDDHDHQGGHVEESRPLLLPMGSLYEGALFVLF 181
           LLTAQPESGSSV++A+VVA+VPAQTMADDD D QG   E+SRP L+PMGS+YEGA+FVLF
Sbjct: 123 LLTAQPESGSSVKHASVVAYVPAQTMADDD-DEQG--KEKSRP-LMPMGSVYEGAMFVLF 182

Query: 182 EMVVFRVGDVLGQTPEVVRARHTNLE 207
           EMVV+++G+ LGQ+PE VR+RHTNLE
Sbjct: 183 EMVVYKLGEALGQSPEAVRSRHTNLE 204
[Close]
BLAST of Spo12960.1 vs. UniProtKB/TrEMBL
Match: V4U7D7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007013mg PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 8.700e-72
Identity = 148/206 (71.84%), Postives = 176/206 (85.44%), Query Frame = 1 

		  

Query: 2   AKTSHSTSSMATQICNQIATIFTTPTTT-APPLDLLVDQITTTAAQNGRIFVYGVGREGL 61
           ++ S S SS+A+QICNQIA+IF+ PT    PPLD++V ++T TA Q G +F+YGVGREGL
Sbjct: 3   SENSSSMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGL 62

Query: 62  MLKALCMRLAHLGLSAHCVFDMTTPPIGPTDLLIASAGPGGFSTVDAICGVAKSNGACVL 121
           MLKALCMRLAHLG+S H VFDMTTPPI   DLLIASAGPGGFSTVDAIC  A+S GA VL
Sbjct: 63  MLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVL 122

Query: 122 LLTAQPESGSSVEYATVVAHVPAQTMADDDHDHQGGHVEESRPLLLPMGSLYEGALFVLF 181
           LLTAQPESGSSV++A+VVA+VPAQTMADDD D QG   E+SRP L+PMGS+YEGA+FVLF
Sbjct: 123 LLTAQPESGSSVKHASVVAYVPAQTMADDD-DEQG--KEKSRP-LMPMGSVYEGAMFVLF 182

Query: 182 EMVVFRVGDVLGQTPEVVRARHTNLE 207
           EMVV+++G+ LGQ+PE VR+RHTNLE
Sbjct: 183 EMVVYKLGEALGQSPEAVRSRHTNLE 204
[Close]
BLAST of Spo12960.1 vs. ExPASy Swiss-Prot
Match: PHI_MYCGS (3-hexulose-6-phosphate isomerase OS=Mycobacterium gastri GN=rmpB PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.300e-15
Identity = 68/208 (32.69%), Postives = 92/208 (44.23%), Query Frame = 1 

		  

Query: 2   AKTSHSTSSMATQICNQIATIFTTPTTTAPPLDLLVDQITTTA---AQNGRIFVYGVGRE 61
           A+   +   +   I N ++ +      TA  +D   +Q+   A    Q GR+FV G GR 
Sbjct: 5   AEADGAVKVVGDDITNNLSLVRDEVADTAAKVD--PEQVAVLARQIVQPGRVFVAGAGRS 64

Query: 62  GLMLKALCMRLAHLGLSAHCVFDMTTPPIGPTDLLIASAGPGGFSTVDAICGVAKSNGAC 121
           GL+L+   MRL H GL+ H   D TTP I   DLL+ ++G G  S V      AK  GA 
Sbjct: 65  GLVLRMAAMRLMHFGLTVHVAGDTTTPAISAGDLLLVASGSGTTSGVVKSAETAKKAGAR 124

Query: 122 VLLLTAQPESGSSVEYATVVAHVPAQTMADDDHDHQGGHVEESRPLLLPMGSLYEGALFV 181
           +   T  P+S      A  V  +PA    D      G H+          GSL+E  LFV
Sbjct: 125 IAAFTTNPDS-PLAGLADAVVIIPAAQKTD-----HGSHISRQY-----AGSLFEQVLFV 184

Query: 182 LFEMVVFRVGDVLGQTPEVVRARHTNLE 207
           + E V   + D      E +  RH NLE
Sbjct: 185 VTEAVFQSLWDHTEVEAEELWTRHANLE 199
[Close]
BLAST of Spo12960.1 vs. ExPASy Swiss-Prot
Match: PHI_METJA (3-hexulose-6-phosphate isomerase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=phi PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.700e-10
Identity = 49/173 (28.32%), Postives = 80/173 (46.24%), Query Frame = 1 

		  

Query: 33  LDLLVDQITTTAAQNGRIFVYGVGREGLMLKALCMRLAHLGLSAHCVFDMTTPPIGPTDL 92
           LD L+D+I        +IF++GVGR G + +   MRL HLG  ++ V + TTP     DL
Sbjct: 30  LDSLIDRIIKAK----KIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYEKDDL 89

Query: 93  LIASAGPGGFSTVDAICGVAKSNGACVLLLTAQPESGSSVEYATVVAHVPAQTMADDDHD 152
           LI  +G G   +V  +   AK+    ++ +    E G+ VE+A +   +P          
Sbjct: 90  LILISGSGRTESVLTVAKKAKNINNNIIAIVC--ECGNVVEFADLT--IP---------- 149

Query: 153 HQGGHVEESRPLLLPMGSLYEGALFVLFEMVVFRVGDVLGQTPEVVRARHTNL 206
                +E  +   LPMG+ +E    +  ++V+  +   L      +  RH NL
Sbjct: 150 -----LEVKKSKYLPMGTTFEETALIFLDLVIAEIMKRLNLDESEIIKRHCNL 179
[Close]
BLAST of Spo12960.1 vs. TAIR (Arabidopsis)
Match: AT5G52190.1 (Sugar isomerase (SIS) family protein)

HSP 1 Score: 243.0 bits (619), Expect = 1.600e-64
Identity = 130/201 (64.68%), Postives = 159/201 (79.10%), Query Frame = 1 

		  

Query: 9   SSMATQICNQIATIFTTPTTT-APPLDLLVDQITTTAAQ--NGRIFVYGVGREGLMLKAL 68
           +++++QICNQI+++FT PT+   PPLDLLV ++T  +    N RIF+YGVGREGLMLKA 
Sbjct: 10  ANLSSQICNQISSVFTKPTSPYPPPLDLLVTELTAISRNRNNSRIFLYGVGREGLMLKAF 69

Query: 69  CMRLAHLGLSAHCVFDMTTPPIGPTDLLIASAGPGGFSTVDAICGVAKSNGACVLLLTAQ 128
            MRL H GL  H VFDMTTPPI  +DLLIASAGPGGFSTVDA+C VAKSNGA V+L+TA+
Sbjct: 70  AMRLFHFGLPTHLVFDMTTPPISSSDLLIASAGPGGFSTVDALCSVAKSNGAKVILITAE 129

Query: 129 PESGSSVEYATVVAHVPAQTMADDDHDHQGGHVEESRPLLLPMGSLYEGALFVLFEMVVF 188
           P  GS V++AT V +VPAQTMA D+    G  VE     LLPMGS+YEGALFVLFEMVV+
Sbjct: 130 PAIGSCVKHATDVCYVPAQTMASDNGG--GDSVEMGERRLLPMGSVYEGALFVLFEMVVY 189

Query: 189 RVGDVLGQTPEVVRARHTNLE 207
           ++G+VLG++ E VRARHTNLE
Sbjct: 190 KLGEVLGESSESVRARHTNLE 208
The following BLAST results are available for this feature:
BLAST of Spo12960.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902235433|gb|KNA23903.1|5.7e-10999.5hypothetical protein SOVF_0194... [more]
gi|731363640|ref|XP_010693535.1|1.9e-8886.4PREDICTED: uncharacterized pro... [more]
gi|976926279|gb|KVI10148.1|2.3e-7371.4Sugar isomerase (SIS) [Cynara ... [more]
gi|698418512|ref|XP_009776310.1|8.6e-7371.5PREDICTED: uncharacterized pro... [more]
gi|567858412|ref|XP_006421889.1|1.2e-7171.8hypothetical protein CICLE_v10... [more]
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BLAST of Spo12960.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RWR7_SPIOL4.0e-10999.5Uncharacterized protein OS=Spi... [more]
A0A0J8BDW0_BETVU1.3e-8886.4Uncharacterized protein OS=Bet... [more]
A0A103YJD8_CYNCS1.6e-7371.4Sugar isomerase (SIS) OS=Cynar... [more]
A0A067EY09_CITSI8.7e-7271.8Uncharacterized protein OS=Cit... [more]
V4U7D7_9ROSI8.7e-7271.8Uncharacterized protein OS=Cit... [more]
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BLAST of Spo12960.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PHI_MYCGS6.3e-1532.63-hexulose-6-phosphate isomera... [more]
PHI_METJA4.7e-1028.33-hexulose-6-phosphate isomera... [more]
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BLAST of Spo12960.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G52190.11.6e-6464.6Sugar isomerase (SIS) family p... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.10490coord: 11..205
score: 1.1
NoneNo IPR availablePANTHERPTHR10937GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZINGcoord: 9..150
score: 4.9
NoneNo IPR availablePANTHERPTHR10937:SF13SUBFAMILY NOT NAMEDcoord: 9..150
score: 4.9
NoneNo IPR availableunknownSSF53697SIS domaincoord: 33..205
score: 2.22

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0006508 proteolysis
biological_process GO:0050790 regulation of catalytic activity
biological_process GO:0009649 entrainment of circadian clock
biological_process GO:0048573 photoperiodism, flowering
biological_process GO:0042753 positive regulation of circadian rhythm
biological_process GO:0009585 red, far-red light phototransduction
biological_process GO:0009909 regulation of flower development
biological_process GO:0010114 response to red light
cellular_component GO:0005634 nucleus
molecular_function GO:0030246 carbohydrate binding
molecular_function GO:0016853 isomerase activity
molecular_function GO:0004197 cysteine-type endopeptidase activity
molecular_function GO:0042803 protein homodimerization activity
RNA-Seq Expression