Spo13002 (gene) | SpinachBase

Overview


Name	Spo13002
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	RNA-binding protein, putative
Location	chr3 : 46709611 .. 46715666 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTTAAAACCTCTTCGCTTCCTTTCCATGAAGTAGAATATGGTCGTCCCGTTATCGGCTTATCGCTTTTGGGTCAATTGAAAACAACCTCTCTGCAATTGCAGGGGTAAGGTTGCGCACACCCGACCCTCCCTTACTCCGCTTCTTGCGGGAGCCTCTTTGAGGCAATGGGGTAATGATAAAGATGAATGACTTCTTTAACAACAAGATTGTGCTCCTATCCACCAAATTTTTAAGAGGCGAGCATCATTCGGAGCTTTGACACACCTTATACCAGCCCTCCATGGCCCTTTGGTCTTGTTATCCTATCCAAACCTACTAAGTGCAGCCGTATGGAATTGTCCCCCGTTCCCCGTAGGAAGTTTCTCATGCATTTATTTATTTCCTCCTTATAGGAAGGCTCATGGCTTGCATATAGTAATTGGGAATAGTGTCTAGGGTGGAGGAAACGAGGCACGACCTACTAGCCATAGAAACCTTAACCTTTTCTAAATTGAAGTTCACTTTTGCTTTACCAGGTCTATTGAGGGATATGGGAAAGCGTAAGTAAGGGCTAAGATCCGTAGTCTCCTTGAAGCTAATAAGCACATCAAAGAATAGGCTCCTATCTTCCATAGTGGTATCAACAGAGAAAAGAACTCTACTTTTTACCTCATAAAAAACTTCCCATTTCCCTTGAGCATATAGTTTTATAATAGTATTACGGGTGGTGTTTTTTTAGTTTAAGTGAATAAAGAATAAGGCAGTGGAGGAATAAAAGGGAAAAAGGAGGGGAAGGAAGACATTACTATATTAAGTGGATTCAACCTTAAGGTAAAATGAGAAGTATTTTATGGGAAAAGAGTATAGGGAGAAATGGGAAGTGCAATTTTTTTGGCAGAGGATGGAGGGAGTAAATATATTGGAAATGGTCATGCAGTGAAGAGTACTACTTTCAACTAAAGTTTGATGTATTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGAGTAAATGTATTGGAAATGGTCATCCACATATTGTTTGCCAATCATCAAAGATGTAGAAAAGGATAGAGCGGAATTTCAACACTTCATATAGTTTATGACTTTATTCTTCATCTCAAAAGCTTCTATAACATATTTGTGTGAATAAAGAACAATATTTACTGTCTACTCAACTCGTGCAACACACGTACCCTTTCACTAGTGGTAATAAAAAAAAATTGCAGAAAAACCTTGCTTGTTGTTTATTACTCCTCTTCCTTTGATATCCGCTACATACTTTCTCTTTCTCCCCTTCCTCTGTTCAACATTCATCCACAAATATTAGATTATTGTTGATAAGATTTCTGAAGTTATTGCTTGAAGATTGCTGAAGTCCAGAGGTTTTCTGCCCGGTATCTTTATTTTTCTGGTCTTTCTGTGTGTGTAAAATTAGGTCATGGCAAGGATAAATTCTCAACGGTTTAAGTTTAAGGAAATTTGGAGCATTTTTCTTTTGCCAGCAAGAAAAAATGTTGGAGTTAAGAAAGTCAAAGAATTAGGGTTTAGGAAATAGGTTGTTGTACGACCTGACTGACAAGTGTTACCTTTGAAGATGAAACCGAGTAATTAGATATTGCTGGGAAGAAACTTTGATCTGAATTTTAGTAGCTGAAAATTGTCATTGATGGCTGTACTATCTGATGGTATTTTAAAATTTTGAACTTCTCTTGTTCTCTAATGTGAAAACCTGCAATTCAGTCAAGTCCTGTGTTTTGGGCTTCGGTCATTAGCTATAAATCTGCTAGGAGGACAGGGGTTGTTCTTGCTACTGTTACTTTTGATTTGCAGAATTGCATCTCATTTAATTTCTAAGTCTATCTGTTCAGTAGGACTACCTATGTGATATGAGATTGTTTGGTTGATTTTATGTCTACTTGTCTCACATTGAAATCTGATGAATTCGATGTCCAATCTTGAATGCATATTATGATTTGCTCATGTCAACTTAGAACCAGATGAAGAAGTTTTTCCAGTTATTAACTTGGTTAACAGAAGTCACAAATTCATAGCTTCATCGGGAAGATGTTTTATGTTAAGAAATGGTTATGCATTTTTGAGGTGTATACATCACGTACGATGTGTCGTTGATTCCTTTCAAAGAATCAAAATCCAGGCAGAGTCTGGTTTAATACTGAGCTTAGCCATATTGTTGATGTGATGGTCTCTTTCAGATTGTTATAGTAAAAAACATGTCAATGTCAGGTTCTGGATATATTTTTCGCCTTTCTTTTAATTATTTATCAATTATGCCTTTTTAATTGAATTGTAAAGAGCCCAAAGTTGAATGAATGTATTGAGCAGTAATGCAATTATGTTTTATGAACTATTTGATAGCTAAAGATTTAGTTTGTGATGCTCTTTTAGATTATTATAGATAAAAAGAATGTCAAGTTCAGGATCAGCAACTGGAAATTTGTCCTTCTTTTAACTATGTTACCTTTTTGCTATTCTGCTCAAGTTTGTGGTGCGGAAAGTTTCAAAATGTATTTGTTCAGTGTTGCAATTATAATTAATGTGGACTATTTAGTAGTACATAATGAGTTTGCAAAGCTCTTGAACTAAAAATTTGAATAATCTATCATATTGGAGATGTTGTGTCTTAATTATATTTATATAACTTGTAGAATCATCCTATGCTGTGTAACTATTGTGAAGATTTCTCACGAGCTAATAACATTCTGATCAGGCGAAACTTGGTTGAATCATAAGGGGACCCATATAAGTTCTTTTTTATGAGGTCTTAACAATTTCTAATTTTGTTTAATACTTCCTTCGATTTTTAATACTCGCAATGTTTGTGATTTCTACACTATTCACATATTATACTTTGACCATTGTTGGTGATTTATACATAAGATAAAACATAGTTATGTTGGGATCTTGTTAGATTTGTCTTAATATGTATTTTCAAAATATTAACTTTTTATAATTTTTGCTTAAAGAGAAATAAAGATATTAATGATCAATATTATGCATTGGTATGCGTGAAAGTGACAAATGTTGCGAGTAAAAATGAACGGAGGAAGTATAAGTTTTGAAATTGGGAAATGGAAGTGAAAGTTTTCCTTTGCTTTTCATGCTTTCAAAATTGTGTGGAAGTTACTTTGAATTTGAACTATCGGCAGTTTTTGATAAAATTATCAATTCTTTTCGTACCGGTGTAGTGCTCATTGTTGTGAATGAACCTTGAATATCTTATGGAGTATGGACTATGTCGCTCAACTCCTAAGTAGTCCTAAGGGATGTGTTGCCCATCTATGTTAAAGGTAGTTTCGAAAGTGTTGAACCAAGGTTTTTGACTTTAGGCTAGCATAGTAGCATATGCATTTTATTGGGTGTTTGGGAACTTGACAAGGGGCTGTTCTCTGTTGTTTGGGTGAGAGAAACTGAGTCAGAGAGAGAGGAGAGGGGTGGGTAGGGGAGTTGAAATTTGATCAGTTCTTTATCTACTTAGTGCTTACAATAGACACCTTTTTATTTACTCCCCGGAATTATGCTATTTGAATTGCTTTTGTAAATTTTGTAATTGTAGACTTTGTAGTGTTACAAGTGAAATAAAGATATTTAGTACTATTGTTGCAGATCACGAGTACAAAGGTGGAGCCGCCACCATCGCTGCCTAAATTGATGACACTTACTAAGGGTTTAAAATTGGTAAGCATTTTGACTGCTTTCTGTAAACCGTGTGCGTCATACAGAGACAGGTTTCACTTCACATTGTCTAATACTGTCACTGTGCTGCTTATGTGTAGGCTGAGCAGTGGGTGAAGAATATGCCTGGAGATGTGGAGGAAGCAGTGGAAATTGAAACGGAATGTAGACCTTCTAGGTTAGCTTTTTGGCCCCCTTGTAACGCCACATCTTAGATTATTGCCTGTTGAAGAGGAAACTTATTAGAGTTAGGTTTTGTGTGTTTATAGGCTTGGTCTTGGGGCAAAAGTTCCTCGAAGATCCCAAGTTGGACCTTTAACTGATCCTGTAGAAAGAAGATTGCATAACAAGTTTGGTCTGAGCAGAAAGAAAACGGCTGGTGATGAGGTTTCCAATCCACCTCCAAAGAATGAAATAGATAATGATAATGATGATGATGACGACGATGAAAATATAGATAGCAGAACTAATTCTTTTTCCAAGAAGAGAGTTGCTCCTCTCTCCAGAATACAGCAAGCAAAGAAGAAATTCAAGTAACTATCTTTCTCGTTTGTCCTTGAATCTTTTTGATGTATTAATTATCCCGATGATAATTGTTAAATTTTTTATTTAATGCTAACTCTTTGGAGATCTTGTATGACTCTGTGAATTGAATTAACTGGTCCAACCTCAGAAATGTTCCCAGAGGGATCTTATGCCAATTCCAGTTTCAAGTTCCTTTCTTGCCCTCATTTCCTCAGAAATGTTCCCAGAGGGATCTTATGCCAATTCCAGTTTCAAGTTCCTTTCTTGCCCTCATTTCCTTCCTTGATTGTATGATTTTATCTCTAGTCCCTGTAAAGCACATATGAAATCGATGGTAAAATTCTGGCAATCCATCTAGTCTGAACTTGGACTATAACTTTCAAACCTCTCCCGGTACGATTGTTTACTTGGTTTCAAGCTCAATGTTAGAGAACTTATATAAACAATGCCTAAAAGCGAGATCATATGGCTTAATTTCTTTGAACACAAATGGGAGCTTCTGTCATCTTAAGTACAAAGTATAAACTAGCAGCCTAATAGATTTAAGTTGTACAATACTGGTGTCCACTTGTAAAATTATCCTATTTCATCTTAGTCTTGTATATCTTACTCATTAAAAGCTATTTTTTTGTTGATCATTTAATCTAAGTTCATGATGTAGTATAAATCATATGGCTTTTAAATCATAAAATCAAAAACTGAAAGCTGATAGTGATACTAAACAAACCCTAAGGGCTCGTCGGTTTTTAGATTTTGGTTTTTTAGTTTAGTAAGTCCTACTCCCTCCATATTTATTTAAAATATATACTTTAATCGTCACGTAGTTTTAGGAGGGTGAGTTGAATTTGTTAAGATAAGATAAAAGTGAGGTATTGAGTTATTATTTATTGTAAGAAATTGATAGTGGCTGAATTATTCAATGTAATAAAAAGAGTATGTGAGTAAGTGTGGGACCACAGGAGGGACATACTGATTAATATAATTGAATGTGGAGACTATGATATGCCAAAATAGAAAGTGCATCTTTTAATAAAATACGACCGAATAAAAAAAAGTGTACTCCCTCCGTCCCTTAATATTCGACCTGTTTTGGCTTTTTGCACTATTCACATAATTCACTTTGACTCTATTTTATTTATAGTGTATGAAAACAAATGTTAGTATATAATATATTGTTGGATTCATCTTAATATATATTTTCAAATATTAATATTTTTGTAACTTTTTATAATATGTAGTTAAAGAAATTGATGGTCAAAGTTGTGCATTGGCAAGCGTGTCCGGTCAAAACAGGTCGAGTATTAAGGGACAGAGGGAGTATCTTTTAAATAAATACATAGGGAGTATGATTTATATTGAATCATGAACTAAAATAAATATAGTTATAGTAATTATGTTAATTTTGAAAACTGACAAAAATACTTTTTATGTTTTTCATATTTTTGTTTTTAGTCTTGTATAA

mRNA sequence

ATGGCTCTTAAAACCTCTTCGCTTCCTTTCCATGAAATCACGAGTACAAAGGTGGAGCCGCCACCATCGCTGCCTAAATTGATGACACTTACTAAGGGTTTAAAATTGGCTGAGCAGTGGGTGAAGAATATGCCTGGAGATGTGGAGGAAGCAGTGGAAATTGAAACGGAATGTAGACCTTCTAGGCTTGGTCTTGGGGCAAAAGTTCCTCGAAGATCCCAAGTTGGACCTTTAACTGATCCTGTAGAAAGAAGATTGCATAACAAGTTTGGTCTGAGCAGAAAGAAAACGGCTGGTGATGAGGTTTCCAATCCACCTCCAAAGAATGAAATAGATAATGATAATGATGATGATGACGACGATGAAAATATAGATAGCAGAACTAATTCTTTTTCCAAGAAGAGAGTTGCTCCTCTCTCCAGAATACAGCAAGCAAAGAAGAAATTCAATCTTGTATAA

Coding sequence (CDS)

ATGGCTCTTAAAACCTCTTCGCTTCCTTTCCATGAAATCACGAGTACAAAGGTGGAGCCGCCACCATCGCTGCCTAAATTGATGACACTTACTAAGGGTTTAAAATTGGCTGAGCAGTGGGTGAAGAATATGCCTGGAGATGTGGAGGAAGCAGTGGAAATTGAAACGGAATGTAGACCTTCTAGGCTTGGTCTTGGGGCAAAAGTTCCTCGAAGATCCCAAGTTGGACCTTTAACTGATCCTGTAGAAAGAAGATTGCATAACAAGTTTGGTCTGAGCAGAAAGAAAACGGCTGGTGATGAGGTTTCCAATCCACCTCCAAAGAATGAAATAGATAATGATAATGATGATGATGACGACGATGAAAATATAGATAGCAGAACTAATTCTTTTTCCAAGAAGAGAGTTGCTCCTCTCTCCAGAATACAGCAAGCAAAGAAGAAATTCAATCTTGTATAA

Protein sequence

MALKTSSLPFHEITSTKVEPPPSLPKLMTLTKGLKLAEQWVKNMPGDVEEAVEIETECRPSRLGLGAKVPRRSQVGPLTDPVERRLHNKFGLSRKKTAGDEVSNPPPKNEIDNDNDDDDDDENIDSRTNSFSKKRVAPLSRIQQAKKKFNLV

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo13002.1	Spo13002.1	mRNA

Homology

[Close]

BLAST of Spo13002.1 vs. NCBI nr
Match: gi|902237054|gb|KNA24636.1| (hypothetical protein SOVF_013840 [Spinacia oleracea])

HSP 1 Score: 268.1 bits (684), Expect = 9.500e-69
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 1


		  
Query: 12  EITSTKVEPPPSLPKLMTLTKGLKLAEQWVKNMPGDVEEAVEIETECRPSRLGLGAKVPR 71
           +ITSTKVEPPPSLPKLMTLTKGLKLAEQWVKNMPGDVEEAVEIETECRPSRLGLGAKVPR
Sbjct: 5   KITSTKVEPPPSLPKLMTLTKGLKLAEQWVKNMPGDVEEAVEIETECRPSRLGLGAKVPR 64

Query: 72  RSQVGPLTDPVERRLHNKFGLSRKKTAGDEVSNPPPKNEIDNDNDDDDDDENIDSRTNSF 131
           RSQVGPLTDPVERRLHNKFGLSRKKTAGDEVSNPPPKNEIDNDNDDDDDDENIDSRTNSF
Sbjct: 65  RSQVGPLTDPVERRLHNKFGLSRKKTAGDEVSNPPPKNEIDNDNDDDDDDENIDSRTNSF 124

Query: 132 SKKRVAPLSRIQQAKKKF 150
           SKKRVAPLSRIQQAKKKF
Sbjct: 125 SKKRVAPLSRIQQAKKKF 142

[Close]

BLAST of Spo13002.1 vs. NCBI nr
Match: gi|902232287|gb|KNA22550.1| (hypothetical protein SOVF_032970 isoform B [Spinacia oleracea])

HSP 1 Score: 233.8 bits (595), Expect = 2.000e-58
Identity = 121/137 (88.32%), Postives = 126/137 (91.97%), Query Frame = 1


		  
Query: 15  STKVEPPPSLPKLMTLTKGLKLAEQWVKNMPGDVEEAVEIETECRPSRLGLGAKVPRRSQ 74
           STK EPPPSLPKLMTLTKGLKLAE+WVKNMPGDVEEAVEIE ECRPSRLGLGAKVPRRS+
Sbjct: 3   STKEEPPPSLPKLMTLTKGLKLAEEWVKNMPGDVEEAVEIEMECRPSRLGLGAKVPRRSR 62

Query: 75  VGPLTDPVERRLHNKFGLSRKKTAGDEVSNPPPKNEIDNDNDDDDDDENIDSRTNSFSKK 134
           VGPLTDPVERRLH KFGL RKK +GDE SNPPPKNEI  DNDDDDD+ENIDSRTNSFSKK
Sbjct: 63  VGPLTDPVERRLHKKFGLGRKKASGDEDSNPPPKNEI--DNDDDDDEENIDSRTNSFSKK 122

Query: 135 RVAPLSRIQQAKKKFNL 152
           R A LSRI QAKKKFN+
Sbjct: 123 RAAALSRIPQAKKKFNM 137

[Close]

BLAST of Spo13002.1 vs. NCBI nr
Match: gi|902232286|gb|KNA22549.1| (hypothetical protein SOVF_032970 isoform A [Spinacia oleracea])

HSP 1 Score: 230.3 bits (586), Expect = 2.200e-57
Identity = 120/135 (88.89%), Postives = 124/135 (91.85%), Query Frame = 1


		  
Query: 15  STKVEPPPSLPKLMTLTKGLKLAEQWVKNMPGDVEEAVEIETECRPSRLGLGAKVPRRSQ 74
           STK EPPPSLPKLMTLTKGLKLAE+WVKNMPGDVEEAVEIE ECRPSRLGLGAKVPRRS+
Sbjct: 3   STKEEPPPSLPKLMTLTKGLKLAEEWVKNMPGDVEEAVEIEMECRPSRLGLGAKVPRRSR 62

Query: 75  VGPLTDPVERRLHNKFGLSRKKTAGDEVSNPPPKNEIDNDNDDDDDDENIDSRTNSFSKK 134
           VGPLTDPVERRLH KFGL RKK +GDE SNPPPKNEI  DNDDDDD+ENIDSRTNSFSKK
Sbjct: 63  VGPLTDPVERRLHKKFGLGRKKASGDEDSNPPPKNEI--DNDDDDDEENIDSRTNSFSKK 122

Query: 135 RVAPLSRIQQAKKKF 150
           R A LSRI QAKKKF
Sbjct: 123 RAAALSRIPQAKKKF 135

[Close]

BLAST of Spo13002.1 vs. NCBI nr
Match: gi|731365919|ref|XP_010694782.1| (PREDICTED: uncharacterized protein LOC104907543 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 184.9 bits (468), Expect = 1.100e-43
Identity = 98/135 (72.59%), Postives = 110/135 (81.48%), Query Frame = 1


		  
Query: 15  STKVEPPPSLPKLMTLTKGLKLAEQWVKNMPGDVEEAVEIETECRPSRLGLGAKVPRRSQ 74
           STK EPPPSLPKLMTL KGLKLA+QWVKNMPGD+EE  ++E E RPSRLGLGAKVPR+S 
Sbjct: 2   STKEEPPPSLPKLMTLNKGLKLAQQWVKNMPGDLEEVEDMEVEGRPSRLGLGAKVPRKSH 61

Query: 75  VGPLTDPVERRLHNKFGLSRKKTAGDEVSNPPPKNEIDNDNDDDDDDENIDSRTNSFSKK 134
           VGP  DPVERRLH KFG  RKK+A D+ S    KNEI  D DD+DDDEN+DSRTN+F+KK
Sbjct: 62  VGPFNDPVERRLHKKFGAGRKKSADDDDSILSAKNEI--DIDDEDDDENLDSRTNAFAKK 121

Query: 135 RVAPLSRIQQAKKKF 150
           R APL+   QAKKKF
Sbjct: 122 RAAPLNLTPQAKKKF 134

[Close]

BLAST of Spo13002.1 vs. NCBI nr
Match: gi|731350856|ref|XP_010686727.1| (PREDICTED: uncharacterized protein LOC104900894 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 184.1 bits (466), Expect = 1.800e-43
Identity = 96/135 (71.11%), Postives = 110/135 (81.48%), Query Frame = 1


		  
Query: 15  STKVEPPPSLPKLMTLTKGLKLAEQWVKNMPGDVEEAVEIETECRPSRLGLGAKVPRRSQ 74
           S K EPPPSLPKLMTL KGLKLAEQWVKNM GDV+E  ++E E RPSRLGLGAKVPR+S 
Sbjct: 2   SMKEEPPPSLPKLMTLNKGLKLAEQWVKNMTGDVDEVEDVELEGRPSRLGLGAKVPRKSH 61

Query: 75  VGPLTDPVERRLHNKFGLSRKKTAGDEVSNPPPKNEIDNDNDDDDDDENIDSRTNSFSKK 134
           VGP  DPVERRLH KFG  RK++A D+ S P  KNEI  DND++DDDEN+DSR+N+F+KK
Sbjct: 62  VGPFNDPVERRLHKKFGAGRKRSADDDDSVPSTKNEI--DNDEEDDDENLDSRSNAFAKK 121

Query: 135 RVAPLSRIQQAKKKF 150
           R APL+   QAKKKF
Sbjct: 122 RAAPLNPTPQAKKKF 134

[Close]

BLAST of Spo13002.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RYR1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_013840 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 6.600e-69
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 1


		  
Query: 12  EITSTKVEPPPSLPKLMTLTKGLKLAEQWVKNMPGDVEEAVEIETECRPSRLGLGAKVPR 71
           +ITSTKVEPPPSLPKLMTLTKGLKLAEQWVKNMPGDVEEAVEIETECRPSRLGLGAKVPR
Sbjct: 5   KITSTKVEPPPSLPKLMTLTKGLKLAEQWVKNMPGDVEEAVEIETECRPSRLGLGAKVPR 64

Query: 72  RSQVGPLTDPVERRLHNKFGLSRKKTAGDEVSNPPPKNEIDNDNDDDDDDENIDSRTNSF 131
           RSQVGPLTDPVERRLHNKFGLSRKKTAGDEVSNPPPKNEIDNDNDDDDDDENIDSRTNSF
Sbjct: 65  RSQVGPLTDPVERRLHNKFGLSRKKTAGDEVSNPPPKNEIDNDNDDDDDDENIDSRTNSF 124

Query: 132 SKKRVAPLSRIQQAKKKF 150
           SKKRVAPLSRIQQAKKKF
Sbjct: 125 SKKRVAPLSRIQQAKKKF 142

[Close]

BLAST of Spo13002.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RSN8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_032970 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.400e-58
Identity = 121/137 (88.32%), Postives = 126/137 (91.97%), Query Frame = 1


		  
Query: 15  STKVEPPPSLPKLMTLTKGLKLAEQWVKNMPGDVEEAVEIETECRPSRLGLGAKVPRRSQ 74
           STK EPPPSLPKLMTLTKGLKLAE+WVKNMPGDVEEAVEIE ECRPSRLGLGAKVPRRS+
Sbjct: 3   STKEEPPPSLPKLMTLTKGLKLAEEWVKNMPGDVEEAVEIEMECRPSRLGLGAKVPRRSR 62

Query: 75  VGPLTDPVERRLHNKFGLSRKKTAGDEVSNPPPKNEIDNDNDDDDDDENIDSRTNSFSKK 134
           VGPLTDPVERRLH KFGL RKK +GDE SNPPPKNEI  DNDDDDD+ENIDSRTNSFSKK
Sbjct: 63  VGPLTDPVERRLHKKFGLGRKKASGDEDSNPPPKNEI--DNDDDDDEENIDSRTNSFSKK 122

Query: 135 RVAPLSRIQQAKKKFNL 152
           R A LSRI QAKKKFN+
Sbjct: 123 RAAALSRIPQAKKKFNM 137

[Close]

BLAST of Spo13002.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RUE5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_032970 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.500e-57
Identity = 120/135 (88.89%), Postives = 124/135 (91.85%), Query Frame = 1


		  
Query: 15  STKVEPPPSLPKLMTLTKGLKLAEQWVKNMPGDVEEAVEIETECRPSRLGLGAKVPRRSQ 74
           STK EPPPSLPKLMTLTKGLKLAE+WVKNMPGDVEEAVEIE ECRPSRLGLGAKVPRRS+
Sbjct: 3   STKEEPPPSLPKLMTLTKGLKLAEEWVKNMPGDVEEAVEIEMECRPSRLGLGAKVPRRSR 62

Query: 75  VGPLTDPVERRLHNKFGLSRKKTAGDEVSNPPPKNEIDNDNDDDDDDENIDSRTNSFSKK 134
           VGPLTDPVERRLH KFGL RKK +GDE SNPPPKNEI  DNDDDDD+ENIDSRTNSFSKK
Sbjct: 63  VGPLTDPVERRLHKKFGLGRKKASGDEDSNPPPKNEI--DNDDDDDEENIDSRTNSFSKK 122

Query: 135 RVAPLSRIQQAKKKF 150
           R A LSRI QAKKKF
Sbjct: 123 RAAALSRIPQAKKKF 135

[Close]

BLAST of Spo13002.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BDT3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g095670 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 7.400e-44
Identity = 98/135 (72.59%), Postives = 110/135 (81.48%), Query Frame = 1


		  
Query: 15  STKVEPPPSLPKLMTLTKGLKLAEQWVKNMPGDVEEAVEIETECRPSRLGLGAKVPRRSQ 74
           STK EPPPSLPKLMTL KGLKLA+QWVKNMPGD+EE  ++E E RPSRLGLGAKVPR+S 
Sbjct: 2   STKEEPPPSLPKLMTLNKGLKLAQQWVKNMPGDLEEVEDMEVEGRPSRLGLGAKVPRKSH 61

Query: 75  VGPLTDPVERRLHNKFGLSRKKTAGDEVSNPPPKNEIDNDNDDDDDDENIDSRTNSFSKK 134
           VGP  DPVERRLH KFG  RKK+A D+ S    KNEI  D DD+DDDEN+DSRTN+F+KK
Sbjct: 62  VGPFNDPVERRLHKKFGAGRKKSADDDDSILSAKNEI--DIDDEDDDENLDSRTNAFAKK 121

Query: 135 RVAPLSRIQQAKKKF 150
           R APL+   QAKKKF
Sbjct: 122 RAAPLNLTPQAKKKF 134

[Close]

BLAST of Spo13002.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BWA7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g185080 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.300e-43
Identity = 96/135 (71.11%), Postives = 110/135 (81.48%), Query Frame = 1


		  
Query: 15  STKVEPPPSLPKLMTLTKGLKLAEQWVKNMPGDVEEAVEIETECRPSRLGLGAKVPRRSQ 74
           S K EPPPSLPKLMTL KGLKLAEQWVKNM GDV+E  ++E E RPSRLGLGAKVPR+S 
Sbjct: 2   SMKEEPPPSLPKLMTLNKGLKLAEQWVKNMTGDVDEVEDVELEGRPSRLGLGAKVPRKSH 61

Query: 75  VGPLTDPVERRLHNKFGLSRKKTAGDEVSNPPPKNEIDNDNDDDDDDENIDSRTNSFSKK 134
           VGP  DPVERRLH KFG  RK++A D+ S P  KNEI  DND++DDDEN+DSR+N+F+KK
Sbjct: 62  VGPFNDPVERRLHKKFGAGRKRSADDDDSVPSTKNEI--DNDEEDDDENLDSRSNAFAKK 121

Query: 135 RVAPLSRIQQAKKKF 150
           R APL+   QAKKKF
Sbjct: 122 RAAPLNPTPQAKKKF 134

[Close]

BLAST of Spo13002.1 vs. TAIR (Arabidopsis)
Match: AT3G61370.1 (Protein of unknown function (DUF3245))

HSP 1 Score: 60.1 bits (144), Expect = 1.400e-9
Identity = 40/122 (32.79%), Postives = 65/122 (53.28%), Query Frame = 1


		  
Query: 15  STKVEPPPSLPKLMTLTKGLKLAEQWVKNMPGDVEE-AVEIETECRPSRLGLGAKVPRRS 74
           +T+       P++    K  KLAE+WV +M    E+  +E   E RP RLGLGA+V R++
Sbjct: 2   TTETAKKKGTPQIFKTDKAQKLAEKWVASMTRPTEDDPIETAQEERPHRLGLGAQVSRQT 61

Query: 75  QVGPLTDPVERRLHNKFGLSRKKTAGDEVSNPPPKNEIDNDNDDDDDDENIDSRTNSFSK 134
           +  P  DP++++L  KF   ++K A              N  DD +DD+  +S++ +F K
Sbjct: 62  KRRPSDDPLDQKLEAKFAAVKRKNARLVAE---AAGSSKNAGDDSEDDDESESKSQAFGK 120

Query: 135 KR 136
           K+
Sbjct: 122 KK 120

The following BLAST results are available for this feature:

BLAST of Spo13002.1 vs. NCBI nr
BLAST of Spo13002.1 vs. UniProtKB/TrEMBL
BLAST of Spo13002.1 vs. ExPASy Swiss-Prot
BLAST of Spo13002.1 vs. TAIR (Arabidopsis)

BLAST of Spo13002.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902237054\|gb\|KNA24636.1\|	9.5e-69	99.2	hypothetical protein SOVF_0138...	[more]
gi\|902232287\|gb\|KNA22550.1\|	2.0e-58	88.3	hypothetical protein SOVF_0329...	[more]
gi\|902232286\|gb\|KNA22549.1\|	2.2e-57	88.8	hypothetical protein SOVF_0329...	[more]
gi\|731365919\|ref\|XP_010694782.1\|	1.1e-43	72.5	PREDICTED: uncharacterized pro...	[more]
gi\|731350856\|ref\|XP_010686727.1\|	1.8e-43	71.1	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo13002.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RYR1_SPIOL	6.6e-69	99.2	Uncharacterized protein OS=Spi...	[more]
A0A0K9RSN8_SPIOL	1.4e-58	88.3	Uncharacterized protein OS=Spi...	[more]
A0A0K9RUE5_SPIOL	1.5e-57	88.8	Uncharacterized protein OS=Spi...	[more]
A0A0J8BDT3_BETVU	7.4e-44	72.5	Uncharacterized protein OS=Bet...	[more]
A0A0J8BWA7_BETVU	1.3e-43	71.1	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo13002.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo13002.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT3G61370.1	1.4e-9	32.7	Protein of unknown function (D...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021641	Protein of unknown function DUF3245	PFAM	PF11595	DUF3245	coord: 28..146 score: 4.7
None	No IPR available	PANTHER	PTHR35741	FAMILY NOT NAMED	coord: 11..150 score: 1.9

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0010182	sugar mediated signaling pathway
biological_process	GO:0009845	seed germination
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0050826	response to freezing
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0045694	regulation of embryo sac egg cell differentiation
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0016579	protein deubiquitination
biological_process	GO:0000338	protein deneddylation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0009640	photomorphogenesis
biological_process	GO:0006406	mRNA export from nucleus
biological_process	GO:0006312	mitotic recombination
biological_process	GO:0009933	meristem structural organization
biological_process	GO:0010074	maintenance of meristem identity
biological_process	GO:0019915	lipid storage
biological_process	GO:0000741	karyogamy
biological_process	GO:0016571	histone methylation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo13492	0.68	Barchart \| Table
Spo02483	0.67	Barchart \| Table
Spo03865	0.67	Barchart \| Table
Spo03984	0.66	Barchart \| Table