Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTCTAACCACTCAATCATACATATATTGACAACCTTCTTCAAGTGCTTATTGGAGAGACCCATCTAATTAAGGGGAAGGGGGGCTACTCCAATATTACAACCAACAATTAATATTATTATCCCACCCAAATTTCCATACTATAATTCTTCAATTCTCCTAACTTTGTGATTCATTCAATCAATCAACTATGTTGGGCAAGCGATCCCGACCGGCGATCGGTAAACTCGCCGGGGTGTTAAGGTCCGGGATCATCGACACGATGACAAGTCCAAGAAGTCCATTGGATTGTAGGTCGTTGTTCTCCCCCAGAGGGCTAAAGAGTAATAACTCTAATTATTATGATAAGTACGGAGGGATTGGGATCGGGTTAGGCATAGTTGTAGCCCTTGAAAACAACAACAACAACAACAACAAGTCTAGTAATAAGACATGTAACGTTGTTGAGTGTGGTGGTGAAATACTAGCTAAATATGCTATTTGTAGCCAATTTTCGACCCGGTCGAGCCCGATCAACGTTACGTCGTCGTCGTCGTCAAGGAAGATTAAGAACGAGATTAACAACCATAATGGTGTATTAAGACATGATCAACAAGAAGAGGAGGAAATGATTGAGGGTTTTGACGAGGAGTTTACTTATGTCACGTGCCGTGGACCTAATAAGTCCACTACTACAGTTTACTATAGTGGTGATGAACAACGACCCAAAATTAGCAAGAAAATCGGCGTATTTAACATATCTTCTCCGGCGAGATTTTCCGGTGATTGTCGCCGTGATTCCGATTCCGATTTCCTCAGCTCGTGTCATTCGTGTAGGAAAGGTCTTCATGGCAAAGACATTTACATGTACAGGTAAATAATCTTTTCACAAAAACATTTCCGTTTCTTTTTTAATTGCACCATTTGAGTTTTACCACTATCTCCATATTCTTATACAGTCAATTTTTTGTGATTCATATGTAATGAAAAACATATTTATGTGTAATCTTGTTAGATTCATATATACTTTCAAATAAATTTTGTTAGATACGTCTCGAAATATATATATATATAGATACGTCTCGAAATTTGAAAGTATATATATATATACTTTCAAATTAAGATATTAGGGGTAAAAATACTTGTTAAACTTTCCTTTTCATCTGTCGCGTAATACTGATAACATTATTGTAAAAAAAATAACAGGGGGGAGAAGGCATTTTGTAGTGCTGAATGCAGGCAAAGACAAATAAGGATTGATGAGAAGAAAGAACAATGCAGATCGGAAGCTTCTAGATCCGGCGAAATTTCGAGCTCGCCGTACAGTTACACTAGTACAGGACAGATCTTCTCAACTGGGATTGTAGCTGTTTAGAGGAATAATATCATAATTAGTATGTTATTATTATAATAATTATTATCTAAGCAAAGATATAATGTAGAATAATTAATATAAATTAGATAAATAACAAAAAGAGATGAAAAAAAAACCGGCAAATTTCCATTTTGTGACTATACATAAAAAAGAAACCAAATCCATAAGAAGAAAAAAGTAAGAAATTCTTATTGGGTTTGATCTTACATGTAACTGTAATATGAATCATAAATTAAATTTTGATGTGAATTACAGATATTATTGTATTATATGCTTCTTTAGTATATAATTTTTTTTTAACTATATGCTTCATAAATATTTTGATTTAATAGGGTCGGCTCCCGTTATTTAGCTAGCGCAGGGTCGAAATAAGTCAGAGGATTCTATAATATGGTTCAGAAAATTTTGTGGTTGAGTTGTTTCTTTTTTGAGATATTTGGGTTCCATTTGGAAAGTATAGAATACAGAATACTCTTTCTGTATGAATTTTGTTTTGTAGGACCATTCTTTTCCTCTTAATTATTCATTTATTGAATAAGAATATAAGGACATGTTGATGATTATGATCAACCTGAAA GTCTAACCACTCAATCATACATATATTGACAACCTTCTTCAAGTGCTTATTGGAGAGACCCATCTAATTAAGGGGAAGGGGGGCTACTCCAATATTACAACCAACAATTAATATTATTATCCCACCCAAATTTCCATACTATAATTCTTCAATTCTCCTAACTTTGTGATTCATTCAATCAATCAACTATGTTGGGCAAGCGATCCCGACCGGCGATCGGTAAACTCGCCGGGGTGTTAAGGTCCGGGATCATCGACACGATGACAAGTCCAAGAAGTCCATTGGATTGTAGGTCGTTGTTCTCCCCCAGAGGGCTAAAGAGTAATAACTCTAATTATTATGATAAGTACGGAGGGATTGGGATCGGGTTAGGCATAGTTGTAGCCCTTGAAAACAACAACAACAACAACAACAAGTCTAGTAATAAGACATGTAACGTTGTTGAGTGTGGTGGTGAAATACTAGCTAAATATGCTATTTGTAGCCAATTTTCGACCCGGTCGAGCCCGATCAACGTTACGTCGTCGTCGTCGTCAAGGAAGATTAAGAACGAGATTAACAACCATAATGGTGTATTAAGACATGATCAACAAGAAGAGGAGGAAATGATTGAGGGTTTTGACGAGGAGTTTACTTATGTCACGTGCCGTGGACCTAATAAGTCCACTACTACAGTTTACTATAGTGGTGATGAACAACGACCCAAAATTAGCAAGAAAATCGGCGTATTTAACATATCTTCTCCGGCGAGATTTTCCGGTGATTGTCGCCGTGATTCCGATTCCGATTTCCTCAGCTCGTGTCATTCGTGTAGGAAAGGTCTTCATGGCAAAGACATTTACATGTACAGGGGGGAGAAGGCATTTTGTAGTGCTGAATGCAGGCAAAGACAAATAAGGATTGATGAGAAGAAAGAACAATGCAGATCGGAAGCTTCTAGATCCGGCGAAATTTCGAGCTCGCCGTACAGTTACACTAGTACAGGACAGATCTTCTCAACTGGGATTGTAGCTGTTTAGAGGAATAATATCATAATTAGTATGTTATTATTATAATAATTATTATCTAAGCAAAGATATAATGTAGAATAATTAATATAAATTAGATAAATAACAAAAAGAGATGAAAAAAAAACCGGCAAATTTCCATTTTGTGACTATACATAAAAAAGAAACCAAATCCATAAGAAGAAAAAAGTAAGAAATTCTTATTGGGTTTGATCTTACATGTAACTGTAATATGAATCATAAATTAAATTTTGATGTGAATTACAGATATTATTGTATTATATGCTTCTTTAGTATATAATTTTTTTTTAACTATATGCTTCATAAATATTTTGATTTAATAGGGTCGGCTCCCGTTATTTAGCTAGCGCAGGGTCGAAATAAGTCAGAGGATTCTATAATATGGTTCAGAAAATTTTGTGGTTGAGTTGTTTCTTTTTTGAGATATTTGGGTTCCATTTGGAAAGTATAGAATACAGAATACTCTTTCTGTATGAATTTTGTTTTGTAGGACCATTCTTTTCCTCTTAATTATTCATTTATTGAATAAGAATATAAGGACATGTTGATGATTATGATCAACCTGAAA ATGTTGGGCAAGCGATCCCGACCGGCGATCGGTAAACTCGCCGGGGTGTTAAGGTCCGGGATCATCGACACGATGACAAGTCCAAGAAGTCCATTGGATTGTAGGTCGTTGTTCTCCCCCAGAGGGCTAAAGAGTAATAACTCTAATTATTATGATAAGTACGGAGGGATTGGGATCGGGTTAGGCATAGTTGTAGCCCTTGAAAACAACAACAACAACAACAACAAGTCTAGTAATAAGACATGTAACGTTGTTGAGTGTGGTGGTGAAATACTAGCTAAATATGCTATTTGTAGCCAATTTTCGACCCGGTCGAGCCCGATCAACGTTACGTCGTCGTCGTCGTCAAGGAAGATTAAGAACGAGATTAACAACCATAATGGTGTATTAAGACATGATCAACAAGAAGAGGAGGAAATGATTGAGGGTTTTGACGAGGAGTTTACTTATGTCACGTGCCGTGGACCTAATAAGTCCACTACTACAGTTTACTATAGTGGTGATGAACAACGACCCAAAATTAGCAAGAAAATCGGCGTATTTAACATATCTTCTCCGGCGAGATTTTCCGGTGATTGTCGCCGTGATTCCGATTCCGATTTCCTCAGCTCGTGTCATTCGTGTAGGAAAGGTCTTCATGGCAAAGACATTTACATGTACAGGGGGGAGAAGGCATTTTGTAGTGCTGAATGCAGGCAAAGACAAATAAGGATTGATGAGAAGAAAGAACAATGCAGATCGGAAGCTTCTAGATCCGGCGAAATTTCGAGCTCGCCGTACAGTTACACTAGTACAGGACAGATCTTCTCAACTGGGATTGTAGCTGTTTAG MLGKRSRPAIGKLAGVLRSGIIDTMTSPRSPLDCRSLFSPRGLKSNNSNYYDKYGGIGIGLGIVVALENNNNNNNKSSNKTCNVVECGGEILAKYAICSQFSTRSSPINVTSSSSSRKIKNEINNHNGVLRHDQQEEEEMIEGFDEEFTYVTCRGPNKSTTTVYYSGDEQRPKISKKIGVFNISSPARFSGDCRRDSDSDFLSSCHSCRKGLHGKDIYMYRGEKAFCSAECRQRQIRIDEKKEQCRSEASRSGEISSSPYSYTSTGQIFSTGIVAV Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo13019.1 vs. NCBI nr
Match: gi|902147561|gb|KNA05164.1| (hypothetical protein SOVF_192890 [Spinacia oleracea]) HSP 1 Score: 439.5 bits (1129), Expect = 4.300e-120 Identity = 220/221 (99.55%), Postives = 220/221 (99.55%), Query Frame = 1
BLAST of Spo13019.1 vs. NCBI nr
Match: gi|731352442|ref|XP_010687552.1| (PREDICTED: uncharacterized protein LOC104901657 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 344.0 bits (881), Expect = 2.500e-91 Identity = 200/284 (70.42%), Postives = 225/284 (79.23%), Query Frame = 1
BLAST of Spo13019.1 vs. NCBI nr
Match: gi|147854933|emb|CAN80273.1| (hypothetical protein VITISV_039443 [Vitis vinifera]) HSP 1 Score: 224.2 bits (570), Expect = 2.900e-55 Identity = 149/281 (53.02%), Postives = 173/281 (61.57%), Query Frame = 1
BLAST of Spo13019.1 vs. NCBI nr
Match: gi|225444657|ref|XP_002276822.1| (PREDICTED: uncharacterized protein LOC100264520 [Vitis vinifera]) HSP 1 Score: 222.6 bits (566), Expect = 8.300e-55 Identity = 148/281 (52.67%), Postives = 171/281 (60.85%), Query Frame = 1
BLAST of Spo13019.1 vs. NCBI nr
Match: gi|1009172810|ref|XP_015867477.1| (PREDICTED: uncharacterized protein LOC107404979 [Ziziphus jujuba]) HSP 1 Score: 208.4 bits (529), Expect = 1.600e-50 Identity = 146/291 (50.17%), Postives = 179/291 (61.51%), Query Frame = 1
BLAST of Spo13019.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QD18_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_192890 PE=4 SV=1) HSP 1 Score: 439.5 bits (1129), Expect = 3.000e-120 Identity = 220/221 (99.55%), Postives = 220/221 (99.55%), Query Frame = 1
BLAST of Spo13019.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BPN4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g190790 PE=4 SV=1) HSP 1 Score: 344.0 bits (881), Expect = 1.700e-91 Identity = 200/284 (70.42%), Postives = 225/284 (79.23%), Query Frame = 1
BLAST of Spo13019.1 vs. UniProtKB/TrEMBL
Match: A5AP27_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039443 PE=4 SV=1) HSP 1 Score: 224.2 bits (570), Expect = 2.000e-55 Identity = 149/281 (53.02%), Postives = 173/281 (61.57%), Query Frame = 1
BLAST of Spo13019.1 vs. UniProtKB/TrEMBL
Match: D7TCB6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g00690 PE=4 SV=1) HSP 1 Score: 222.6 bits (566), Expect = 5.800e-55 Identity = 148/281 (52.67%), Postives = 171/281 (60.85%), Query Frame = 1
BLAST of Spo13019.1 vs. UniProtKB/TrEMBL
Match: W9R921_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002533 PE=4 SV=1) HSP 1 Score: 196.4 bits (498), Expect = 4.500e-47 Identity = 138/280 (49.29%), Postives = 166/280 (59.29%), Query Frame = 1
BLAST of Spo13019.1 vs. ExPASy Swiss-Prot
Match: MARD1_ARATH (Protein MARD1 OS=Arabidopsis thaliana GN=MARD1 PE=2 SV=2) HSP 1 Score: 54.7 bits (130), Expect = 1.900e-6 Identity = 33/99 (33.33%), Postives = 51/99 (51.52%), Query Frame = 1
BLAST of Spo13019.1 vs. TAIR (Arabidopsis)
Match: AT5G20700.1 (Protein of unknown function (DUF581)) HSP 1 Score: 120.9 bits (302), Expect = 1.200e-27 Identity = 105/289 (36.33%), Postives = 138/289 (47.75%), Query Frame = 1
BLAST of Spo13019.1 vs. TAIR (Arabidopsis)
Match: AT1G74940.1 (Protein of unknown function (DUF581)) HSP 1 Score: 92.0 bits (227), Expect = 6.000e-19 Identity = 65/157 (41.40%), Postives = 90/157 (57.32%), Query Frame = 1
BLAST of Spo13019.1 vs. TAIR (Arabidopsis)
Match: AT1G22160.1 (Protein of unknown function (DUF581)) HSP 1 Score: 66.2 bits (160), Expect = 3.500e-11 Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 1
BLAST of Spo13019.1 vs. TAIR (Arabidopsis)
Match: AT5G11460.1 (Protein of unknown function (DUF581)) HSP 1 Score: 64.7 bits (156), Expect = 1.000e-10 Identity = 49/140 (35.00%), Postives = 67/140 (47.86%), Query Frame = 1
BLAST of Spo13019.1 vs. TAIR (Arabidopsis)
Match: AT1G19200.1 (Protein of unknown function (DUF581)) HSP 1 Score: 63.9 bits (154), Expect = 1.700e-10 Identity = 49/127 (38.58%), Postives = 64/127 (50.39%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo13019.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo13019.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo13019.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo13019.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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