Spo13045 (gene)

Overview
NameSpo13045
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionTetratricopeptide repeat (TPR)-like superfamily protein
LocationSpoScf_00561 : 112964 .. 116488 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCTTAATCCCTTCAGAATGTGATTCTTAATCCCTTCAATTTCTTCCACAGTCGTTGATTTGTATTTATCTAATGATTATTTGGTGGCAGAGGATTCTAGGTGCTTGAGACATATGGCTTATTTATTTGATGTAATGGTGTTACTATACGATACTTTCATGTCGACACTATATCTTGAAGTTAGATATGTCTTTATATTATATCTTTGCCTGGCTGGATGCAGATTTATTGCTATAATCTTGTTTGAGGCTGTGGTCTTTGCAATTCTTGTCTGTCATGAGTCAGTTAATGGCTCTGATTATGTGCATAACTACATATTTGTTAGTGACCTTTATAGACCAGAAAGTTGCTCGATTCCATATTGCAGATTTGCATAATTGAATCAAACCAGAAAGTTTTGAGGAATTGGACTGAGAGAACCATTTTGAAGTTTTGACTGATGGTGAATGGATTTTAGGCCTAGGTGAAAACATTTTAATGCATTAAATGCATATTTTGCACATGTTTAGTTTATCAGCTTCATTGCATCCTGTCTATGCTCCATTAGTTTAATGACTTATTAAAACAATTGAATTTCAGGCTATAATTTACCAGCAAAAAGCTTTGGACATCAATAAGAGGGAACTGGGACTCAATCACCCTGACACAATGAAAAGTTATGGAGATTTAGAGGGTTTCTATTACCGCCTTCAGCATACAGAGCTGGCTCTTAAGTATGTTTTTCTTATAATGTATAGATTTCTTTGGTTAAACTTTATAGTAATACTCATTATGTTTAGAGTCTGTGAGAAGACTTGCATTTTGTCATTGGAAATCATCATCATCATCTACTCAATAATGGACACGCTAAAAGATTGTCTTGGTGATTTGGTGAATTATTAATTTTAACAGTAAAACCAACAATCATGTTTTTGCATTAGTTTGATTTTCTCGGACGCAAAGACCTTATGAAAAGGTAATTCTTGTTTTGATACACAATGACTTTGTCACAACAATGCTAATTCCAATTTCAACTCCAATATGAAGCTCACGATGTTGTACAGGAAGTCTTGAGCATATTCTCTCACCTTATAATTTATTCTAAATAATACTATGTACAACATGAAACTATAAATCTCTTGATGTCACAAGTATTTTTCTACTTGCAGGTCTTCCACAACTTCTACTCATGATCGGCTTTTTTATGTTCGAGGAGAGAGAATAACTCCAACTTAGTTACTAGAGTCCCAGGTGTCTCCACGTATTATGGAGCATGATCTTGGGCCTGCAGTATCCTTGATCTGGATATTTTGGACCATCTAGGTACTAGATATTAGTAATCTCACTCTTGGACAACAGCAACATAAGGTACCCCATCTGCCATAGCCCCATAACAAGCACCTTCGAGGTTCTGCTGGTTCTGTTCTAGTCATATAGTTTGTGCAAATTGGTTAATAATTGTTTGTTTTATGTGCTTGATAATAAAATGGTAATTAAACTGTTGTATGGATGCCTTAGATTTTAGTGACACTAATATATCTTAATTACCTTTCTACAGATCTCGTTTCCTCTTGTTTACTTTGGAAGAGTGGATTAACTATAGTTTCTATGGCTTTTGATGCGGACTGGTACTATCTCTTACCTCTAATTTGGATGGTAACATGTTTCATGTTGGTCTGTGGGGTGCAAAAAAGCATTCCTAAATTCTTAAGGAATTAAGGATACATTGGTACTTTTGATCTTATGACTTTTGAGTCTAAGGATACATTGGTACGTATGTTTCAATCTGTGTACCTGACCTATTAAAAGGTTTTTACATCAGCATAAATGACAGTCCGTACTATTTGCATGAATCCTGGAGCTCATTTTTTATAAGTGACATGTTTATTTTGATATTCTTCTTAAAGTTGTTGGATTGGTTGCTGAAACCTTCCCGGTGGTATGATTTATTTAGTTTTATTTTTATTAGTCTTACTACTGCCTTGTTTTGCTGCTTTTAACTCATCTTGCATCTATGGAAAAGCTAAGCCTAGGTCATCCAATATTTCTTGTTTTGATATCGTTACCATATGAACCAACTTTACTATAAGTTTTTTTTTCAAAACTTGAACAGAATTATGATTTAAGAGTATACAGAACTTGTAAGTTTAAATATGCACCAAATTTTATTGGCTTTACGATACTTGCAATTTTGGACACTTACCCCCTTTGCATATAACCCGTGACTCCTAATTTCGAACTTACATGTATACACCATGAGTTTCAAAAGTAGACATCCTTGTACACGTGTGAGGATAAGGAATTATGTATTCTGTATTATAGTATCTAGAATATTTATATAACTAAGTGATATTGATTATATTAGGAAGTAAAAGGTGTAAAGCCAATTACTTGTCTTATAAGCAGACATTATCCACATAGCCTTATCTAGCCCAAAACCATATTCCTAAATCTGAGCTGCCTGAAATAAGTTTGATATGTGTAAGTAAATCGACCTCTCGAATGCTCTCTTCTCTGCCCCCTATTCTGTCTTATGGTTTATGCGGACATGAATAGCCTTTTTCGCTCCAAACTCTCAACTAATGAACCAAAATAGGAATTCTAAACCCTTTCCATGTTTAATACGCTTAGTATTAGGTTGTCAATCCTTATTCTCATCCACGTTGGTCAATTTATTCACATTTAAGGCTAGTTTGATCGTATATGTCATATTTTGACTAAAATAGTCGTTTTCGCTCCCAACTCTCAACTAATGAACCAAAATAAGAATTCTAAACCCTTTTCATGTTTAATACACTTAGTATTAGGTTGCCAATCCTCATTCTAATCTACTTTGGTCAATTTATGCACATCTAAGGCTCATTTTGGGCGTTATGGGACATATGTACCTATATGAGCCAAATGAGCTTTAGATGTGCATAAATAACTTGGAATGAATCTTAGTAACCTCCAACTAAGCATATGAAGCATAAAAAAGGTTTAGAAAGTGTCCTTAGGTTCATTTGTTGATATTTGGGATCGAAAATGCCATTTTTGGCTAAATATGACCTATATCGGGCCAAATGAGCCTTAGATGTGCATAAAGAACTTGAAATAAATCTTAGTATACTCAGAAAGTTCTAACTTATCATATCAAACATAAAAAAGATTTAGAAAGTGTCCTTAGGTTCATTTGTTGATATTTGGGATCGAAAATGCCATTTTTGACCATAAATGGCCTATATCGACCCAAATGAACCATAGGCGTGCATAACGAACTTGAAATGAGTCTTATAATCATATAACTAATCATATGAATCATGAAAAACGTTTAGAATATGAAAATAGGTTCGTTTGTTGGTAGTTGGGATCGAAAATGCCATTTTTGGCCATAAATGACCTATATCGACCCAAGTGACCCTTAGGCGTGCATAACGAACTTGAAATGAGTTTCATAAACATTTAACTAATCATATTAATCATTAAAAAGGTTTATAATTTGAATATAAGTTCGTTTGTTGGTAGTTGGGATCGAAAATGCCATTTTTGGCCATAAATTACCT

mRNA sequence

ATGATTCTTAATCCCTTCAGAATATTTATTGCTATAATCTTGTTTGAGGCTGTGGTCTTTGCAATTCTTGTCTGTCATGAGTCAGTTAATGGCTCTGATTATGTGCATAACTACATATTTGCTATAATTTACCAGCAAAAAGCTTTGGACATCAATAAGAGGGAACTGGGACTCAATCACCCTGACACAATGAAAAGTTATGGAGATTTAGAGGGTTTCTATTACCGCCTTCAGCATACAGAGCTGGCTCTTAAGTCTTCCACAACTTCTACTCATGATCGGCTTTTTTATGTTCGAGGAGAGAGAATAACTCCAACTTAGTTACTAGAGTCCCAGGTGTCTCCACGTATTATGGAGCATGATCTTGGGCCTGCAGTATCCTTGATCTGGATATTTTGGACCATCTAGGTACTAGATATTAGTAATCTCACTCTTGGACAACAGCAACATAAGATCTCGTTTCCTCTTGTTTACTTTGGAAGAGTGGATTAACTATAGTTTCTATGGCTTTTGATGCGGACTGGTACTATCTCTTACCTCTAATTTGGATGGTAACATGTTTCATGTTGGTCTGTGGGGTGCAAAAAAGCATTCCTAAATTCTTAAGGAATTAAGGATACATTGGTACTTTTGATCTTATGACTTTTGAGTCTAAGGATACATTGGTACGTATGTTTCAATCTGTGTACCTGACCTATTAAAAGGTTTTTACATCAGCATAAATGACAGTCCGTACTATTTGCATGAATCCTGGAGCTCATTTTTTATAAGTGACATGTTTATTTTGATATTCTTCTTAAAGTTGTTGGATTGGTTGCTGAAACCTTCCCGGTGGTATGATTTATTTAGTTTTATTTTTATTAGTCTTACTACTGCCTTGTTTTGCTGCTTTTAACTCATCTTGCATCTATGGAAAAGCTAAGCCTAGGTCATCCAATATTTCTTGTTTTGATATCGTTACCATATGAACCAACTTTACTATAAGTTTTTTTTTCAAAACTTGAACAGAATTATGATTTAAGAGTATACAGAACTTGTAAGTTTAAATATGCACCAAATTTTATTGGCTTTACGATACTTGCAATTTTGGACACTTACCCCCTTTGCATATAACCCGTGACTCCTAATTTCGAACTTACATGTATACACCATGAGTTTCAAAAGTAGACATCCTTGTACACGTGTGAGGATAAGGAATTATGTATTCTGTATTATAGTATCTAGAATATTTATATAACTAAGTGATATTGATTATATTAGGAAGTAAAAGGTGTAAAGCCAATTACTTGTCTTATAAGCAGACATTATCCACATAGCCTTATCTAGCCCAAAACCATATTCCTAAATCTGAGCTGCCTGAAATAAGTTTGATATGTGTAAGTAAATCGACCTCTCGAATGCTCTCTTCTCTGCCCCCTATTCTGTCTTATGGTTTATGCGGACATGAATAGCCTTTTTCGCTCCAAACTCTCAACTAATGAACCAAAATAGGAATTCTAAACCCTTTCCATGTTTAATACGCTTAGTATTAGGTTGTCAATCCTTATTCTCATCCACGTTGGTCAATTTATTCACATTTAAGGCTAGTTTGATCGTATATGTCATATTTTGACTAAAATAGTCGTTTTCGCTCCCAACTCTCAACTAATGAACCAAAATAAGAATTCTAAACCCTTTTCATGTTTAATACACTTAGTATTAGGTTGCCAATCCTCATTCTAATCTACTTTGGTCAATTTATGCACATCTAAGGCTCATTTTGGGCGTTATGGGACATATGTACCTATATGAGCCAAATGAGCTTTAGATGTGCATAAATAACTTGGAATGAATCTTAGTAACCTCCAACTAAGCATATGAAGCATAAAAAAGGTTTAGAAAGTGTCCTTAGGTTCATTTGTTGATATTTGGGATCGAAAATGCCATTTTTGGCTAAATATGACCTATATCGGGCCAAATGAGCCTTAGATGTGCATAAAGAACTTGAAATAAATCTTAGTATACTCAGAAAGTTCTAACTTATCATATCAAACATAAAAAAGATTTAGAAAGTGTCCTTAGGTTCATTTGTTGATATTTGGGATCGAAAATGCCATTTTTGACCATAAATGGCCTATATCGACCCAAATGAACCATAGGCGTGCATAACGAACTTGAAATGAGTCTTATAATCATATAACTAATCATATGAATCATGAAAAACGTTTAGAATATGAAAATAGGTTCGTTTGTTGGTAGTTGGGATCGAAAATGCCATTTTTGGCCATAAATGACCTATATCGACCCAAGTGACCCTTAGGCGTGCATAACGAACTTGAAATGAGTTTCATAAACATTTAACTAATCATATTAATCATTAAAAAGGTTTATAATTTGAATATAAGTTCGTTTGTTGGTAGTTGGGATCGAAAATGCCATTTTTGGCCATAAATTACCT

Coding sequence (CDS)

ATGATTCTTAATCCCTTCAGAATATTTATTGCTATAATCTTGTTTGAGGCTGTGGTCTTTGCAATTCTTGTCTGTCATGAGTCAGTTAATGGCTCTGATTATGTGCATAACTACATATTTGCTATAATTTACCAGCAAAAAGCTTTGGACATCAATAAGAGGGAACTGGGACTCAATCACCCTGACACAATGAAAAGTTATGGAGATTTAGAGGGTTTCTATTACCGCCTTCAGCATACAGAGCTGGCTCTTAAGTCTTCCACAACTTCTACTCATGATCGGCTTTTTTATGTTCGAGGAGAGAGAATAACTCCAACTTAG

Protein sequence

MILNPFRIFIAIILFEAVVFAILVCHESVNGSDYVHNYIFAIIYQQKALDINKRELGLNHPDTMKSYGDLEGFYYRLQHTELALKSSTTSTHDRLFYVRGERITPT
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo13045.1Spo13045.1mRNA


Homology
[Close]
BLAST of Spo13045.1 vs. NCBI nr
Match: gi|475502610|gb|EMT04450.1| (hypothetical protein F775_22910 [Aegilops tauschii])

HSP 1 Score: 90.1 bits (222), Expect = 2.500e-15
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 1 

		  

Query: 38  YIFAIIYQQKALDINKRELGLNHPDTMKSYGDLEGFYYRLQHTELALKSSTTS 91
           ++ A IYQQKALDIN+RELGL+HPDTMKSYGDL  FYYRLQHTELALK ST S
Sbjct: 753 WMSATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKKSTVS 805
[Close]
BLAST of Spo13045.1 vs. NCBI nr
Match: gi|475626644|gb|EMT33423.1| (hypothetical protein F775_02716 [Aegilops tauschii])

HSP 1 Score: 88.6 bits (218), Expect = 7.200e-15
Identity = 42/50 (84.00%), Postives = 44/50 (88.00%), Query Frame = 1 

		  

Query: 41   AIIYQQKALDINKRELGLNHPDTMKSYGDLEGFYYRLQHTELALKSSTTS 91
            A IYQQKALDIN+RELGL+HPDTMKSYGDL  FYYRLQHTELAL  ST S
Sbjct: 992  ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALNKSTVS 1041
[Close]
BLAST of Spo13045.1 vs. NCBI nr
Match: gi|641843405|gb|KDO62305.1| (hypothetical protein CISIN_1g0002301mg, partial [Citrus sinensis])

HSP 1 Score: 85.5 bits (210), Expect = 6.100e-14
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 1 

		  

Query: 41  AIIYQQKALDINKRELGLNHPDTMKSYGDLEGFYYRLQHTELALK 86
           A IYQQKALDIN+RELGL+HPDTMKSYGDL  FYYRLQHTELALK
Sbjct: 882 ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALK 926
[Close]
BLAST of Spo13045.1 vs. NCBI nr
Match: gi|302781128|ref|XP_002972338.1| (hypothetical protein SELMODRAFT_97651, partial [Selaginella moellendorffii])

HSP 1 Score: 85.5 bits (210), Expect = 6.100e-14
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 1 

		  

Query: 41  AIIYQQKALDINKRELGLNHPDTMKSYGDLEGFYYRLQHTELALK 86
           A IYQQKALDIN+RELGL+HPDTMKSYGDL  FYYRLQHTELALK
Sbjct: 931 ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALK 975
[Close]
BLAST of Spo13045.1 vs. NCBI nr
Match: gi|669029920|emb|CDM84277.1| (unnamed protein product [Triticum aestivum])

HSP 1 Score: 85.5 bits (210), Expect = 6.100e-14
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 1 

		  

Query: 41   AIIYQQKALDINKRELGLNHPDTMKSYGDLEGFYYRLQHTELALK 86
            A IYQQKALDIN+RELGL+HPDTMKSYGDL  FYYRLQHTELALK
Sbjct: 972  ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALK 1016
[Close]
BLAST of Spo13045.1 vs. UniProtKB/TrEMBL
Match: T1M9S3_TRIUA (Uncharacterized protein OS=Triticum urartu PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.300e-15
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 1 

		  

Query: 41  AIIYQQKALDINKRELGLNHPDTMKSYGDLEGFYYRLQHTELALKSSTTS 91
           A IYQQKALDIN+RELGL+HPDTMKSYGDL  FYYRLQHTELALK ST S
Sbjct: 208 ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKKSTVS 257
[Close]
BLAST of Spo13045.1 vs. UniProtKB/TrEMBL
Match: M8ARU8_AEGTA (Uncharacterized protein OS=Aegilops tauschii GN=F775_22910 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.700e-15
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 1 

		  

Query: 38  YIFAIIYQQKALDINKRELGLNHPDTMKSYGDLEGFYYRLQHTELALKSSTTS 91
           ++ A IYQQKALDIN+RELGL+HPDTMKSYGDL  FYYRLQHTELALK ST S
Sbjct: 753 WMSATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKKSTVS 805
[Close]
BLAST of Spo13045.1 vs. UniProtKB/TrEMBL
Match: N1R4D3_AEGTA (Uncharacterized protein OS=Aegilops tauschii GN=F775_02716 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.000e-15
Identity = 42/50 (84.00%), Postives = 44/50 (88.00%), Query Frame = 1 

		  

Query: 41   AIIYQQKALDINKRELGLNHPDTMKSYGDLEGFYYRLQHTELALKSSTTS 91
            A IYQQKALDIN+RELGL+HPDTMKSYGDL  FYYRLQHTELAL  ST S
Sbjct: 992  ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALNKSTVS 1041
[Close]
BLAST of Spo13045.1 vs. UniProtKB/TrEMBL
Match: A0A061GWM1_THECC (Tetratricopeptide repeat (TPR)-like superfamily protein isoform 3 OS=Theobroma cacao GN=TCM_038439 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.300e-14
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 1 

		  

Query: 41  AIIYQQKALDINKRELGLNHPDTMKSYGDLEGFYYRLQHTELALK 86
           A IYQQKALDIN+RELGL+HPDTMKSYGDL  FYYRLQHTELALK
Sbjct: 767 ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALK 811
[Close]
BLAST of Spo13045.1 vs. UniProtKB/TrEMBL
Match: M8BFW3_AEGTA (Uncharacterized protein OS=Aegilops tauschii GN=F775_04890 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.300e-14
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 1 

		  

Query: 41  AIIYQQKALDINKRELGLNHPDTMKSYGDLEGFYYRLQHTELALK 86
           A IYQQKALDIN+RELGL+HPDTMKSYGDL  FYYRLQHTELALK
Sbjct: 839 ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALK 883
[Close]
BLAST of Spo13045.1 vs. ExPASy Swiss-Prot
Match: TSS_ARATH (Protein TSS OS=Arabidopsis thaliana GN=TSS PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.800e-16
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 1 

		  

Query: 41  AIIYQQKALDINKRELGLNHPDTMKSYGDLEGFYYRLQHTELALK 86
           A IYQQKALDIN+RELGL+HPDTMKSYGDL  FYYRLQHTELALK
Sbjct: 953 ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALK 997
[Close]
BLAST of Spo13045.1 vs. ExPASy Swiss-Prot
Match: CLU_ARATH (Clustered mitochondria protein OS=Arabidopsis thaliana GN=FMT PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.200e-6
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1 

		  

Query: 41   AIIYQQKALDINKRELGLNHPDTMKSYGDLEGFYYRLQHTELALKS 87
            AI+ Q K L IN+R LGL+HPDT  SYG++  FY+ L  TELAL++
Sbjct: 1086 AIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALQN 1131
[Close]
BLAST of Spo13045.1 vs. TAIR (Arabidopsis)
Match: AT1G01320.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 85.5 bits (210), Expect = 2.200e-17
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 1 

		  

Query: 41  AIIYQQKALDINKRELGLNHPDTMKSYGDLEGFYYRLQHTELALK 86
           A IYQQKALDIN+RELGL+HPDTMKSYGDL  FYYRLQHTELALK
Sbjct: 941 ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALK 985
[Close]
BLAST of Spo13045.1 vs. TAIR (Arabidopsis)
Match: AT4G28080.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 85.5 bits (210), Expect = 2.200e-17
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 1 

		  

Query: 41  AIIYQQKALDINKRELGLNHPDTMKSYGDLEGFYYRLQHTELALK 86
           A IYQQKALDIN+RELGL+HPDTMKSYGDL  FYYRLQHTELALK
Sbjct: 953 ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALK 997
[Close]
BLAST of Spo13045.1 vs. TAIR (Arabidopsis)
Match: AT1G15290.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 83.2 bits (204), Expect = 1.100e-16
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 1 

		  

Query: 41  AIIYQQKALDINKRELGLNHPDTMKSYGDLEGFYYRLQHTELALK 86
           A IYQQKALDIN+RELGL+HPDTMKSYGDL  FYYRLQH ELALK
Sbjct: 909 ATIYQQKALDINERELGLDHPDTMKSYGDLSVFYYRLQHFELALK 953
[Close]
BLAST of Spo13045.1 vs. TAIR (Arabidopsis)
Match: AT3G52140.4 (tetratricopeptide repeat (TPR)-containing protein)

HSP 1 Score: 53.9 bits (128), Expect = 6.900e-8
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1 

		  

Query: 41   AIIYQQKALDINKRELGLNHPDTMKSYGDLEGFYYRLQHTELALKS 87
            AI+ Q K L IN+R LGL+HPDT  SYG++  FY+ L  TELAL++
Sbjct: 1098 AIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALQN 1143
The following BLAST results are available for this feature:
BLAST of Spo13045.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|475502610|gb|EMT04450.1|2.5e-1581.1hypothetical protein F775_2291... [more]
gi|475626644|gb|EMT33423.1|7.2e-1584.0hypothetical protein F775_0271... [more]
gi|641843405|gb|KDO62305.1|6.1e-1488.8hypothetical protein CISIN_1g0... [more]
gi|302781128|ref|XP_002972338.1|6.1e-1488.8hypothetical protein SELMODRAF... [more]
gi|669029920|emb|CDM84277.1|6.1e-1488.8unnamed protein product [Triti... [more]
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BLAST of Spo13045.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
T1M9S3_TRIUA1.3e-1586.0Uncharacterized protein OS=Tri... [more]
M8ARU8_AEGTA1.7e-1581.1Uncharacterized protein OS=Aeg... [more]
N1R4D3_AEGTA5.0e-1584.0Uncharacterized protein OS=Aeg... [more]
A0A061GWM1_THECC4.3e-1488.8Tetratricopeptide repeat (TPR)... [more]
M8BFW3_AEGTA4.3e-1488.8Uncharacterized protein OS=Aeg... [more]
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BLAST of Spo13045.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TSS_ARATH3.8e-1688.8Protein TSS OS=Arabidopsis tha... [more]
CLU_ARATH1.2e-656.5Clustered mitochondria protein... [more]
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BLAST of Spo13045.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4
Match NameE-valueIdentityDescription
AT1G01320.12.2e-1788.8Tetratricopeptide repeat (TPR)... [more]
AT4G28080.12.2e-1788.8Tetratricopeptide repeat (TPR)... [more]
AT1G15290.11.1e-1686.6Tetratricopeptide repeat (TPR)... [more]
AT3G52140.46.9e-856.5tetratricopeptide repeat (TPR)... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12601EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3coord: 41..85
score: 2.9
NoneNo IPR availablePANTHERPTHR12601:SF17TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 41..85
score: 2.9

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo082750.69Barchart | Table
Spo142400.65Barchart | Table