Spo13061 (gene)

Overview
NameSpo13061
Typegene
OrganismSpinacia oleracea (Spinach)
Description60S ribosomal protein L30
LocationSpoScf_00561 : 352006 .. 354512 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAGGGAGAGCCCAACATAAAACTCTTACTAGTATGAGTCAGCTTTTGTTCACTCGTTCCTGTGTTGTTCATCTTTATTTTTGAAGCATTCTCTCCCTCACCAGGCGCCGCCGCCGCCGACGTCGAGATGGCTCCATCTAAGAAGACGGTAGCCCTAACTTTCTCTCTCGAATATTCTCATCATCGTTTCCCTTTTCATTTACTTGATTGATGATAAAATCAAAAATTAATGGAGGTTGGTTGAATTTGCAGAAGAAGACTCATGAGAGCATCAACAACAGGTTGGCTCTTGTCATGAAGAGTGGCAAGTTCACTCTTGGTTACAAAACGGTCCTCAAAACCCTTAGATCTTCAAAGGGTAAACCCTGTCCTTTTAACATTTCCCAGTTTGTACATTTTTGCAATTTTTTTTTGTAAAAGGTCCCTGTTTCCTTGTTCTATTTTTTAAGAAATGACGTATAAAACTGTATTATTGTATGATATTAACCTGATTGGGGTTATTTAGATCTGCGTGTATTTAAAATTTCGGGGTAATTGTTCATTTTCTGGATTTTAAGTAAGGGTTCAGTTTAGGGTTTTGGAGTTTGTAGCTTTGTTAATATGTTAATATTCAATTCTTGGCATCGTAGATTTGTAAAATCGCAACATTTTATTTGAAACTTGATTTGTGAAATTACTGATCTTCAGTGGTTTTCAGCTGATAGGTTTAGCATACTCGACAATTGGTTATAGTACACATTGTTTAGAAAAGAATCAATGATGTGTCTAGTGTACTACGGAGTAGTGCTGTAGCGTTCTAGTGTTCTAGTGCTGTAGCGTTCTAGTGTTCTAGTGCTGTAGCGTTCTAGTATTACAGGGCTGTATCAGATTAAGCCAGCAAAGTGATAACATCAAACTATGTCGAGAGCTTTACAGATAGTCCACCCTAGCATGCCTAGTTAGAACAAAATAGAACCTTGCTTGCCCCTCACTTTCTTGGTTTCTTTGTTTAGGATCACTCTAACGTGTATAGAACAAGACAACATTTTGCATTCATTGGATATAACTGCTGGGAAAATCTGGTTACTGGATGCATGTTTGGTCTTCTATTATAGTGGTTCGTAGGTTGATATTTATATAATTGTTATTTTTTACGAGGTTTCTGATTAGAATTATGGAGTTATACTGGTGTGAATGTTCGCAGTAATGTAGTGTTTTGGTCAATACTATGTTATAACATTGATACTTTACTTTAATTTGTTAGAATATTTATGGGGAATAGGGGAGAAATTGCAATTTTTTTGTATCTTTTGGCTATGATTTGTATTGCTAAACTGTGCAAGATAGGGTATAGAAACATTTTGTTGAGATGGTTCGGAAATGTTTTGTTGATGCTGTACTCTGGGTTGTGACGGCCTGATTGTTTGCAGTCATGTATAATTGGTGTTGTTGGATATGTGGTTTATTCTACTTTTTATTGCCCATTTCGTCAATGTTGCCATCGAATTAGTCTTAGTTTGGTCTCACATTTATTGGGTTTCCTGTTTCATGGCTTTTTGAATTTGGTGTAAGATCTTTTTTTAAAAAATTGAACTTGCTGTTTTATTCTTGACTTGTGTGAAATGTAATGGTAAGATATGCACTTGTTATTTCTTTCAGCAAAGTTGATCATCATCTCAAACAATTGCCCACCCCTAAGGAAGTCTGAGATTGAGTACTATGCTATGTTGGCTAAGGTCGGAGTTCACCATTACAACGGAAGTAAGTGTTTCTTGGTATTGAATGGTATTTTGTTATTAATAAACCTTCCTTTGATATTTAGACATGTTTTTATCTGATTCCTTGTCTTGAATTCTCTCCCCGAACCCAATGTCAGTAGGATGTTAAACTTATGATGATGTTGGTTTACAGACAATGTTGATCTTGGAACTGCTTGCGGGAAGTATTACAGGGTGTGCTGCCTCAGCATTATTGATGCAGGTGACTCAGATATCATCAAGAGCATGCCCGACCACTAAATTTGCTGCCTTGTAGAAAGAAGTTTTGAGGTTTATTCATAGGAGCTTTGTTTCTGTTTCAGTCTCTTGGACCCGTTTGTTTGTAGACATTCGACTTCTATAGATTCATGTATCTCGTTTAAACTTGGATGCCACTTTTCTCTTGTGCTCTTTTGATATGAGTCTCTTGCTGATCAAGTAATATGGGTTTACAATGGTCTGTCACTGTTGTCATGAACTCATTGGTTGGGACACTGATGGACTCCTCTAAGCTATATCCCATGTTTTTATTAACGTCTGAAACTTTCTCATATGCACAAGTCCAACATTCCGTCAATTTGGAGTAGTCGAGTAGACCTACTACATGTATGTAGATCATTTGACCTTTTTATTAACGTCTGAAACTAACTTGAGGTTTGGTGTTTGATCCTTGCTTCTACCTCTTTGGGTGTAATATTTTAACGTGGAAGTTACTAAAAAGATAATGTAATTCCTAAAAATACAGCCATAAATGGTATACGTAACTCCCG

mRNA sequence

GAAAGGGAGAGCCCAACATAAAACTCTTACTAGTATGAGTCAGCTTTTGTTCACTCGTTCCTGTGTTGTTCATCTTTATTTTTGAAGCATTCTCTCCCTCACCAGGCGCCGCCGCCGCCGACGTCGAGATGGCTCCATCTAAGAAGACGAAGAAGACTCATGAGAGCATCAACAACAGGTTGGCTCTTGTCATGAAGAGTGGCAAGTTCACTCTTGGTTACAAAACGGTCCTCAAAACCCTTAGATCTTCAAAGGCAAAGTTGATCATCATCTCAAACAATTGCCCACCCCTAAGGAAGTCTGAGATTGAGTACTATGCTATGTTGGCTAAGGTCGGAGTTCACCATTACAACGGAAACAATGTTGATCTTGGAACTGCTTGCGGGAAGTATTACAGGGTGTGCTGCCTCAGCATTATTGATGCAGGTGACTCAGATATCATCAAGAGCATGCCCGACCACTAAATTTGCTGCCTTGTAGAAAGAAGTTTTGAGGTTTATTCATAGGAGCTTTGTTTCTGTTTCAGTCTCTTGGACCCGTTTGTTTGTAGACATTCGACTTCTATAGATTCATGTATCTCGTTTAAACTTGGATGCCACTTTTCTCTTGTGCTCTTTTGATATGAGTCTCTTGCTGATCAAGTAATATGGGTTTACAATGGTCTGTCACTGTTGTCATGAACTCATTGGTTGGGACACTGATGGACTCCTCTAAGCTATATCCCATGTTTTTATTAACGTCTGAAACTTTCTCATATGCACAAGTCCAACATTCCGTCAATTTGGAGTAGTCGAGTAGACCTACTACATGTATGTAGATCATTTGACCTTTTTATTAACGTCTGAAACTAACTTGAGGTTTGGTGTTTGATCCTTGCTTCTACCTCTTTGGGTGTAATATTTTAACGTGGAAGTTACTAAAAAGATAATGTAATTCCTAAAAATACAGCCATAAATGGTATACGTAACTCCCG

Coding sequence (CDS)

ATGGCTCCATCTAAGAAGACGAAGAAGACTCATGAGAGCATCAACAACAGGTTGGCTCTTGTCATGAAGAGTGGCAAGTTCACTCTTGGTTACAAAACGGTCCTCAAAACCCTTAGATCTTCAAAGGCAAAGTTGATCATCATCTCAAACAATTGCCCACCCCTAAGGAAGTCTGAGATTGAGTACTATGCTATGTTGGCTAAGGTCGGAGTTCACCATTACAACGGAAACAATGTTGATCTTGGAACTGCTTGCGGGAAGTATTACAGGGTGTGCTGCCTCAGCATTATTGATGCAGGTGACTCAGATATCATCAAGAGCATGCCCGACCACTAA

Protein sequence

MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPDH
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo13061.1Spo13061.1mRNA


Homology
[Close]
BLAST of Spo13061.1 vs. NCBI nr
Match: gi|902209349|gb|KNA16188.1| (hypothetical protein SOVF_091420, partial [Spinacia oleracea])

HSP 1 Score: 227.6 bits (579), Expect = 1.000e-56
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 

		  

Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI
Sbjct: 14  MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 73

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPDH 112
           EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPDH
Sbjct: 74  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPDH 124
[Close]
BLAST of Spo13061.1 vs. NCBI nr
Match: gi|902197326|gb|KNA13384.1| (hypothetical protein SOVF_117400 [Spinacia oleracea])

HSP 1 Score: 227.6 bits (579), Expect = 1.000e-56
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 

		  

Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI
Sbjct: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPDH 112
           EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPDH
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPDH 111
[Close]
BLAST of Spo13061.1 vs. NCBI nr
Match: gi|731348503|ref|XP_010685518.1| (PREDICTED: 60S ribosomal protein L30 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 213.8 bits (543), Expect = 1.600e-52
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = 1 

		  

Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M  SKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLR+SKAKLIIISNNCPPLRKSEI
Sbjct: 1   MVSSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRTSKAKLIIISNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMP-DH 112
           EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSII+ GDSDIIKSMP DH
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIEPGDSDIIKSMPGDH 112
[Close]
BLAST of Spo13061.1 vs. NCBI nr
Match: gi|697155155|ref|XP_009631814.1| (PREDICTED: 60S ribosomal protein L30-like [Nicotiana tomentosiformis])

HSP 1 Score: 209.9 bits (533), Expect = 2.200e-51
Identity = 101/110 (91.82%), Postives = 106/110 (96.36%), Query Frame = 1 

		  

Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M  +KKTKKTHESINNRLALVMKSGK+TLGYKTVLKTLR+SK KLIII+NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPD 111
           EYYAMLAKVGVHHYNGNNVDLGTACGKY+RVCCLSIID GDSDIIKSMPD
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKSMPD 110
[Close]
BLAST of Spo13061.1 vs. NCBI nr
Match: gi|702279726|ref|XP_010045139.1| (PREDICTED: 60S ribosomal protein L30 [Eucalyptus grandis])

HSP 1 Score: 209.5 bits (532), Expect = 2.900e-51
Identity = 102/113 (90.27%), Postives = 107/113 (94.69%), Query Frame = 1 

		  

Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M  +KKTKKTHESINNRLALVMKSGK+TLGYKTVLKTLR+SK KL+II+NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLVIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMP--DH 112
           EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIID GDSDIIKSMP  DH
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGGDH 113
[Close]
BLAST of Spo13061.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R367_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_117400 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 7.300e-57
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 

		  

Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI
Sbjct: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPDH 112
           EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPDH
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPDH 111
[Close]
BLAST of Spo13061.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R9J9_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_091420 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 7.300e-57
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 

		  

Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI
Sbjct: 14  MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 73

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPDH 112
           EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPDH
Sbjct: 74  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPDH 124
[Close]
BLAST of Spo13061.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BU14_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g171800 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.100e-52
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = 1 

		  

Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M  SKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLR+SKAKLIIISNNCPPLRKSEI
Sbjct: 1   MVSSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRTSKAKLIIISNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMP-DH 112
           EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSII+ GDSDIIKSMP DH
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIEPGDSDIIKSMPGDH 112
[Close]
BLAST of Spo13061.1 vs. UniProtKB/TrEMBL
Match: A0A059D9M8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03786 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.000e-51
Identity = 102/113 (90.27%), Postives = 107/113 (94.69%), Query Frame = 1 

		  

Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M  +KKTKKTHESINNRLALVMKSGK+TLGYKTVLKTLR+SK KL+II+NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLVIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMP--DH 112
           EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIID GDSDIIKSMP  DH
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGGDH 113
[Close]
BLAST of Spo13061.1 vs. UniProtKB/TrEMBL
Match: K4DAK6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 2.700e-51
Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = 1 

		  

Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M  +KKTKKTHESINNRLALVMKSGK+TLGYKTVLKTLR+SK KLIII+NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMP 110
           EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIID GDSDIIKSMP
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 109
[Close]
BLAST of Spo13061.1 vs. ExPASy Swiss-Prot
Match: RL30_LUPLU (60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.000e-52
Identity = 98/109 (89.91%), Postives = 105/109 (96.33%), Query Frame = 1 

		  

Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M  +KKTKKTHESINNRLALVMKSGK+TLGYKTVLK+LRSSK KLIII+NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMP 110
           EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSI+D GDSDIIK++P
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTLP 109
[Close]
BLAST of Spo13061.1 vs. ExPASy Swiss-Prot
Match: RL30_EUPES (60S ribosomal protein L30 OS=Euphorbia esula GN=RPL30 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 3.500e-52
Identity = 100/112 (89.29%), Postives = 108/112 (96.43%), Query Frame = 1 

		  

Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M  +KKTKKTHESIN+RLALVMKSGKFTLGYKTVL++LRS+K KLIII+NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINSRLALVMKSGKFTLGYKTVLESLRSNKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMP-DH 112
           EYYAMLAKVGVHHYNGNNVDLGTACGKY+RVCCLSIIDAGDSDIIKS+P DH
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDAGDSDIIKSIPGDH 112
[Close]
BLAST of Spo13061.1 vs. ExPASy Swiss-Prot
Match: RL302_ARATH (60S ribosomal protein L30-2 OS=Arabidopsis thaliana GN=RPL30B PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.500e-47
Identity = 90/109 (82.57%), Postives = 100/109 (91.74%), Query Frame = 1 

		  

Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M   KKTKK+HE IN+RLALVMKSGK+TLGYK+VLK+LR SK KLI+IS NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMP 110
           EYYAMLAKVGVHHYNGNNVDLGTACGKY+RV CLSI+D GDSDIIKS+P
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIP 109
[Close]
BLAST of Spo13061.1 vs. ExPASy Swiss-Prot
Match: RL301_ARATH (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana GN=RPL30A PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.000e-47
Identity = 90/109 (82.57%), Postives = 102/109 (93.58%), Query Frame = 1 

		  

Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M  +KKTKK+HE IN+RLALVMKSGK+TLGYK+VLK+LRSSK KLI+IS+NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMP 110
           EYYAMLAKVGVHHYN NNVDLGTACGKY+RV CLSI+D GDSDIIKS+P
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLP 109
[Close]
BLAST of Spo13061.1 vs. ExPASy Swiss-Prot
Match: RL303_ARATH (60S ribosomal protein L30-3 OS=Arabidopsis thaliana GN=RPL30C PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.200e-46
Identity = 88/109 (80.73%), Postives = 100/109 (91.74%), Query Frame = 1 

		  

Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M   KK KK+HE IN+RLALVMKSGK+TLGYK+VLK+LRSSK KLI+IS+NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMP 110
           EYYAMLAKVGVH YNGNNVDLGTACGKY+RV CLSI+D GDSDIIK++P
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLP 109
[Close]
BLAST of Spo13061.1 vs. TAIR (Arabidopsis)
Match: AT1G77940.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 189.9 bits (481), Expect = 8.500e-49
Identity = 90/109 (82.57%), Postives = 100/109 (91.74%), Query Frame = 1 

		  

Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M   KKTKK+HE IN+RLALVMKSGK+TLGYK+VLK+LR SK KLI+IS NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMP 110
           EYYAMLAKVGVHHYNGNNVDLGTACGKY+RV CLSI+D GDSDIIKS+P
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIP 109
[Close]
BLAST of Spo13061.1 vs. TAIR (Arabidopsis)
Match: AT1G36240.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 189.5 bits (480), Expect = 1.100e-48
Identity = 90/109 (82.57%), Postives = 102/109 (93.58%), Query Frame = 1 

		  

Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M  +KKTKK+HE IN+RLALVMKSGK+TLGYK+VLK+LRSSK KLI+IS+NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMP 110
           EYYAMLAKVGVHHYN NNVDLGTACGKY+RV CLSI+D GDSDIIKS+P
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLP 109
[Close]
BLAST of Spo13061.1 vs. TAIR (Arabidopsis)
Match: AT3G18740.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 186.0 bits (471), Expect = 1.200e-47
Identity = 88/109 (80.73%), Postives = 100/109 (91.74%), Query Frame = 1 

		  

Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M   KK KK+HE IN+RLALVMKSGK+TLGYK+VLK+LRSSK KLI+IS+NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMP 110
           EYYAMLAKVGVH YNGNNVDLGTACGKY+RV CLSI+D GDSDIIK++P
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLP 109
The following BLAST results are available for this feature:
BLAST of Spo13061.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902209349|gb|KNA16188.1|1.0e-56100.hypothetical protein SOVF_0914... [more]
gi|902197326|gb|KNA13384.1|1.0e-56100.hypothetical protein SOVF_1174... [more]
gi|731348503|ref|XP_010685518.1|1.6e-5294.6PREDICTED: 60S ribosomal prote... [more]
gi|697155155|ref|XP_009631814.1|2.2e-5191.8PREDICTED: 60S ribosomal prote... [more]
gi|702279726|ref|XP_010045139.1|2.9e-5190.2PREDICTED: 60S ribosomal prote... [more]
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BLAST of Spo13061.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R367_SPIOL7.3e-57100.Uncharacterized protein OS=Spi... [more]
A0A0K9R9J9_SPIOL7.3e-57100.Uncharacterized protein (Fragm... [more]
A0A0J8BU14_BETVU1.1e-5294.6Uncharacterized protein OS=Bet... [more]
A0A059D9M8_EUCGR2.0e-5190.2Uncharacterized protein OS=Euc... [more]
K4DAK6_SOLLC2.7e-5192.6Uncharacterized protein OS=Sol... [more]
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BLAST of Spo13061.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL30_LUPLU2.0e-5289.960S ribosomal protein L30 OS=L... [more]
RL30_EUPES3.5e-5289.260S ribosomal protein L30 OS=E... [more]
RL302_ARATH1.5e-4782.560S ribosomal protein L30-2 OS... [more]
RL301_ARATH2.0e-4782.5Putative 60S ribosomal protein... [more]
RL303_ARATH2.2e-4680.760S ribosomal protein L30-3 OS... [more]
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BLAST of Spo13061.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G77940.18.5e-4982.5Ribosomal protein L7Ae/L30e/S1... [more]
AT1G36240.11.1e-4882.5Ribosomal protein L7Ae/L30e/S1... [more]
AT3G18740.11.2e-4780.7Ribosomal protein L7Ae/L30e/S1... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000231Ribosomal protein L30ePANTHERPTHR11449RIBOSOMAL PROTEIN L30coord: 2..110
score: 1.6
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 13..105
score: 1.4
IPR022991Ribosomal protein L30e, conserved sitePROSITEPS00709RIBOSOMAL_L30E_1coord: 24..48
scor
IPR022991Ribosomal protein L30e, conserved sitePROSITEPS00993RIBOSOMAL_L30E_2coord: 80..100
scor

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0016556 mRNA modification
biological_process GO:0009089 lysine biosynthetic process via diaminopimelate
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0019877 diaminopimelate biosynthetic process
biological_process GO:0042742 defense response to bacterium
biological_process GO:0030154 cell differentiation
biological_process GO:0000387 spliceosomal snRNP assembly
biological_process GO:0006821 chloride transport
biological_process GO:0006884 cell volume homeostasis
biological_process GO:0006412 translation
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0048481 plant ovule development
biological_process GO:0006655 phosphatidylglycerol biosynthetic process
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0016024 CDP-diacylglycerol biosynthetic process
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0010207 photosystem II assembly
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0010048 vernalization response
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0000413 protein peptidyl-prolyl isomerization
biological_process GO:0006457 protein folding
biological_process GO:0006396 RNA processing
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0006421 asparaginyl-tRNA aminoacylation
biological_process GO:0006522 alanine metabolic process
biological_process GO:0045037 protein import into chloroplast stroma
biological_process GO:0048598 embryonic morphogenesis
biological_process GO:0009658 chloroplast organization
biological_process GO:0048312 intracellular distribution of mitochondria
biological_process GO:0070291 N-acylethanolamine metabolic process
biological_process GO:0006378 mRNA polyadenylation
biological_process GO:0006810 transport
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0051788 response to misfolded protein
biological_process GO:0046686 response to cadmium ion
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0009853 photorespiration
biological_process GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
biological_process GO:0006096 glycolytic process
biological_process GO:0009060 aerobic respiration
biological_process GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0006508 proteolysis
biological_process GO:0007275 multicellular organism development
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
biological_process GO:0051604 protein maturation
biological_process GO:0016458 gene silencing
biological_process GO:0034968 histone lysine methylation
biological_process GO:1903047 mitotic cell cycle process
biological_process GO:0006606 protein import into nucleus
biological_process GO:0042545 cell wall modification
biological_process GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0006414 translational elongation
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0051726 regulation of cell cycle
biological_process GO:0009553 embryo sac development
biological_process GO:0016485 protein processing
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0043481 anthocyanin accumulation in tissues in response to UV light
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0070084 protein initiator methionine removal
biological_process GO:0001510 RNA methylation
biological_process GO:0048440 carpel development
biological_process GO:0031365 N-terminal protein amino acid modification
biological_process GO:0006261 DNA-dependent DNA replication
biological_process GO:0048856 anatomical structure development
cellular_component GO:0045275 respiratory chain complex III
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005634 nucleus
cellular_component GO:0005773 vacuole
cellular_component GO:0005840 ribosome
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005737 cytoplasm
cellular_component GO:0010006 Toc complex
cellular_component GO:0070469 respiratory chain
cellular_component GO:0031359 integral component of chloroplast outer membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005622 intracellular
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0005849 mRNA cleavage factor complex
cellular_component GO:0009506 plasmodesma
cellular_component GO:0034715 pICln-Sm protein complex
cellular_component GO:0005618 cell wall
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009840 chloroplastic endopeptidase Clp complex
cellular_component GO:0030687 preribosome, large subunit precursor
cellular_component GO:0031969 chloroplast membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005654 nucleoplasm
cellular_component GO:0005829 cytosol
cellular_component GO:0034709 methylosome
cellular_component GO:0005730 nucleolus
cellular_component GO:0005886 plasma membrane
cellular_component GO:0022626 cytosolic ribosome
cellular_component GO:0009570 chloroplast stroma
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0050897 cobalt ion binding
molecular_function GO:0070006 metalloaminopeptidase activity
molecular_function GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0008097 5S rRNA binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0004816 asparagine-tRNA ligase activity
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005488 binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003729 mRNA binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity
molecular_function GO:0031177 phosphopantetheine binding
molecular_function GO:0008121 ubiquinol-cytochrome-c reductase activity
molecular_function GO:0005215 transporter activity
molecular_function GO:0043021 ribonucleoprotein complex binding
molecular_function GO:0005515 protein binding
molecular_function GO:0070402 NADPH binding
molecular_function GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor
molecular_function GO:0047412 N-(long-chain-acyl)ethanolamine deacylase activity
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo184070.85Barchart | Table
Spo061010.85Barchart | Table
Spo030070.84Barchart | Table
Spo147570.81Barchart | Table
Spo205190.80Barchart | Table
Spo173740.79Barchart | Table
Spo192310.79Barchart | Table
Spo060970.78Barchart | Table
Spo029310.78Barchart | Table
Spo078210.77Barchart | Table
Spo156410.77Barchart | Table
Spo001950.77Barchart | Table
Spo249180.75Barchart | Table
Spo137320.75Barchart | Table
Spo194410.75Barchart | Table
Spo187840.75Barchart | Table
Spo204600.74Barchart | Table
Spo029930.74Barchart | Table
Spo249160.74Barchart | Table
Spo151330.74Barchart | Table
Spo197990.73Barchart | Table
Spo045380.73Barchart | Table
Spo152350.73Barchart | Table
Spo271540.73Barchart | Table
Spo194400.73Barchart | Table
Spo214060.73Barchart | Table
Spo089140.72Barchart | Table
Spo108630.72Barchart | Table
Spo249050.72Barchart | Table
Spo229120.72Barchart | Table
Spo212780.72Barchart | Table
Spo196500.72Barchart | Table
Spo194130.72Barchart | Table
Spo173730.72Barchart | Table
Spo069040.72Barchart | Table
Spo070170.72Barchart | Table
Spo138180.72Barchart | Table
Spo089310.72Barchart | Table
Spo070160.71Barchart | Table
Spo047550.71Barchart | Table
Spo092080.71Barchart | Table
Spo128160.71Barchart | Table
Spo148840.71Barchart | Table
Spo232980.71Barchart | Table
Spo244160.71Barchart | Table
Spo233980.70Barchart | Table
Spo030060.70Barchart | Table
Spo174950.70Barchart | Table
Spo225780.70Barchart | Table
Spo225350.70Barchart | Table
Spo128610.70Barchart | Table
Spo029280.70Barchart | Table
Spo212070.70Barchart | Table
Spo139340.70Barchart | Table
Spo076670.69Barchart | Table
Spo132880.69Barchart | Table
Spo142380.69Barchart | Table
Spo077820.69Barchart | Table
Spo167540.69Barchart | Table
Spo059460.69Barchart | Table
Spo044970.69Barchart | Table
Spo208960.69Barchart | Table
Spo222750.69Barchart | Table
Spo230700.69Barchart | Table
Spo246740.69Barchart | Table
Spo011830.69Barchart | Table
Spo249370.69Barchart | Table
Spo253490.69Barchart | Table
Spo127570.69Barchart | Table
Spo030080.68Barchart | Table
Spo143230.68Barchart | Table
Spo105530.68Barchart | Table
Spo101650.68Barchart | Table
Spo254810.68Barchart | Table
Spo015350.68Barchart | Table
Spo217280.68Barchart | Table
Spo194340.68Barchart | Table
Spo056180.68Barchart | Table
Spo011300.68Barchart | Table
Spo086640.68Barchart | Table
Spo056320.67Barchart | Table
Spo251750.67Barchart | Table
Spo205150.67Barchart | Table
Spo217160.67Barchart | Table
Spo121910.67Barchart | Table
Spo225010.67Barchart | Table
Spo003630.67Barchart | Table
Spo243950.67Barchart | Table
Spo244200.67Barchart | Table
Spo014780.67Barchart | Table
Spo155220.67Barchart | Table
Spo267260.67Barchart | Table
Spo170800.67Barchart | Table
Spo076680.66Barchart | Table
Spo131190.66Barchart | Table
Spo193050.66Barchart | Table
Spo270400.66Barchart | Table
Spo143800.66Barchart | Table
Spo182210.66Barchart | Table
Spo222910.66Barchart | Table
Spo132410.66Barchart | Table
Spo062020.66Barchart | Table
Spo128770.66Barchart | Table
Spo238290.66Barchart | Table
Spo280410.66Barchart | Table
Spo264880.66Barchart | Table
Spo168350.66Barchart | Table
Spo060940.66Barchart | Table
Spo082850.66Barchart | Table
Spo148580.66Barchart | Table
Spo029880.66Barchart | Table
Spo253060.66Barchart | Table
Spo086910.66Barchart | Table
Spo019990.66Barchart | Table
Spo057080.65Barchart | Table
Spo064970.65Barchart | Table
Spo030620.65Barchart | Table
Spo237770.65Barchart | Table
Spo249360.65Barchart | Table