Spo13169 (gene)

Overview
NameSpo13169
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_44249 : 1 .. 189 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCGCGTATTTAAGTCGTCTGCAAAGGATTCAACCCGCCACTCGGGAGGAATTGTACTTCAAGGCAGCCCACGCGGCGCATCCGCCGCGCGGACTTAGCCTACGACACGTGCCCTTGGGGGCCAAAGCCCCTACTGTAGGACGGCAATCGGGTGGCGGGCGCATGCGTCGCTTCTGGCCCGGATTCTGA

mRNA sequence

GTCGCGTATTTAAGTCGTCTGCAAAGGATTCAACCCGCCACTCGGGAGGAATTGTACTTCAAGGCAGCCCACGCGGCGCATCCGCCGCGCGGACTTAGCCTACGACACGTGCCCTTGGGGGCCAAAGCCCCTACTGTAGGACGGCAATCGGGTGGCGGGCGCATGCGTCGCTTCTGGCCCGGATTCTGA

Coding sequence (CDS)

GTCGCGTATTTAAGTCGTCTGCAAAGGATTCAACCCGCCACTCGGGAGGAATTGTACTTCAAGGCAGCCCACGCGGCGCATCCGCCGCGCGGACTTAGCCTACGACACGTGCCCTTGGGGGCCAAAGCCCCTACTGTAGGACGGCAATCGGGTGGCGGGCGCATGCGTCGCTTCTGGCCCGGATTCTGA

Protein sequence

VAYLSRLQRIQPATREELYFKAAHAAHPPRGLSLRHVPLGAKAPTVGRQSGGGRMRRFWPGF
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo13169.1Spo13169.1mRNA


Homology
[Close]
BLAST of Spo13169.1 vs. UniProtKB/TrEMBL
Match: A0A0P6CHZ2_9CRUS (Uncharacterized protein (Fragment) OS=Daphnia magna PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.700e-7
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 1 

		  

Query: 8   QRIQPATREELYFKAAHAAHPPRGLSLRHVPLGAKAP--TVGRQSGGGRM 56
           QRI PA R ELYF AAHAA PPRGL  RHVPLGA+ P   VG ++ G R+
Sbjct: 60  QRILPAARWELYFMAAHAARPPRGLGQRHVPLGARGPLLRVGNRAAGARV 109
[Close]
BLAST of Spo13169.1 vs. UniProtKB/TrEMBL
Match: I1LXS9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.500e-6
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 1 

		  

Query: 1    VAYLSRLQRIQPATREELYFKAAHAAHPPRGLSLRHVPLGAKAP--TVGRQSGGGRM 56
            VAYLSRLQRI PA R EL FKA+  A+PP     RHVPLG + P   VG+++ G R+
Sbjct: 9602 VAYLSRLQRILPAARWELRFKASRRANPPHEGHQRHVPLGGRGPLLLVGKRTAGARV 9658
[Close]
BLAST of Spo13169.1 vs. UniProtKB/TrEMBL
Match: I1LXT0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.500e-6
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 1 

		  

Query: 1   VAYLSRLQRIQPATREELYFKAAHAAHPPRGLSLRHVPLGAKAP--TVGRQSGGGRM 56
           VAYLSRLQRI PA R EL FKA+  A+PP     RHVPLG + P   VG+++ G R+
Sbjct: 99  VAYLSRLQRILPAARWELRFKASRRANPPHEGHQRHVPLGGRGPLLLVGKRTAGARV 155
[Close]
BLAST of Spo13169.1 vs. UniProtKB/TrEMBL
Match: I1LXQ4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.500e-6
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 1 

		  

Query: 1   VAYLSRLQRIQPATREELYFKAAHAAHPPRGLSLRHVPLGAKAP--TVGRQSGGGRM 56
           VAYLSRLQRI PA R EL FKA+  A+PP     RHVPLG + P   VG+++ G R+
Sbjct: 100 VAYLSRLQRILPAARWELRFKASRRANPPHEGHQRHVPLGGRGPLLLVGKRTAGARV 156
The following BLAST results are available for this feature:
BLAST of Spo13169.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo13169.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 4
Match NameE-valueIdentityDescription
A0A0P6CHZ2_9CRUS1.7e-764.0Uncharacterized protein (Fragm... [more]
I1LXS9_SOYBN2.5e-656.1Uncharacterized protein OS=Gly... [more]
I1LXT0_SOYBN2.5e-656.1Uncharacterized protein OS=Gly... [more]
I1LXQ4_SOYBN2.5e-656.1Uncharacterized protein OS=Gly... [more]
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BLAST of Spo13169.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo13169.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo166060.78Barchart | Table