Spo13191 (gene)

Overview
NameSpo13191
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr3 : 10221350 .. 10222630 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGTGGTAAAAAAGTACAGTATTGAAATGAGATCTGTCACTAATTTTGTTTTTCACAAGATCTACTCCGTACAGCCAAAATCCTTATTCATCCTTCGCAGGTATCATTGCTTGTGTGATTATATTTACTTATGCCAGTGTTGTTTTCGGCTAAACACCAACTGATTTTCGCTTCAGTTCTTTCAGTGCGGGCCTCTGGTTAGTGGTTAGGTTACCTCAGTTGTAGTAAAATAGCACTTAGTAACTGAATCAGCTAATAAACAAAGCATCTTGATGATGGATCATAGAATGTGTGTTTTTTTTTAAAAAAATGGTCCCCCATATGTGCCCCCACCAATCTCGGGCTTGGCCACTTGGACCAGGTGGCTTGAAGTAACCCCTGAGAAGAGTGGGAACATAGCTTACTAACTGGGCTCAAGGCTCCAAGTAAGTAGCATCCCTACCTCATTCCGAACTCCAGAAGAACTGTAAATCCAGTTACTAGACCTTGCTGGATGCAAGTGCTCGGAATTCTGATGCACCAAGTTGGGATTTAGACGTGAGAAGCTGAGCCCAAGGGTTGGAATGTTTGAGTATGGGATCAAAGATCACTTAACCTTGAGAGCTTGAGCTCGGACTCAATTTGTTCAGGAAAAGCTTTGCTTGAAGAGCTTGGTTCCTTAAAAAGTTCCAAGAGGCCTTTAAAAGTTGCCCAATAAACCTATAATGTTACCAAATACATTAAACAAAAGTACAATGTACTTTTTGCTATTTCTGTTAGACTGATGACAATTATGATATTGTCATGTTTATGCAGGTATACGGAATAGAGAAACCTTTGTGTCAAAGTGGAGACAATCAATACGAATTATAAGGAAGCAGGGGATGATACGGAAAAGAAACAACAGATTATGTGTCCACCCCCAAGGCCCCAAGTACCCTGTAAATTATGTGTCCAAACTATACCATAGGGAAAATGTTATACGGAGTACTTCGTATTTTTTATTCTTATTTATATACTCCAGGTTTCACTAATTGTCAAAATAGTCGGGTGTTTTACGGAGTACAATTGTCAAAAAGCAAAATTTGAAAGAGGAGATTGTCCTTCAAAATTCCTGTTTATTCCGTAGAAAATATCAAAAGCTTGGGAGGCCGGTAAGCAAATGTGCAACTCTAGGGATTCTTATGAGGTGAATTATTCAACAAAGCAGATTCATATTCTTTTTTCAACAAGTTATACTTGAATACGAAATACTCCGTATATCTGTATATTGCAAAAGTTTATTTCCAGTTAGCCAA

mRNA sequence

ATGTATGTGGTAAAAAAGTACAGTATTGAAATGAGATCTGTCACTAATTTTGTTTTTCACAAGATCTACTCCGTACAGCCAAAATCCTTATTCATCCTTCGCAGGTATCATTGCTTGTGTATACGGAATAGAGAAACCTTTGTGTCAAAGTGGAGACAATCAATACGAATTATAAGGAAGCAGGGGATGATACGGAAAAGAAACAACAGATTATGTGTCCACCCCCAAGGCCCCAAGTACCCTGTAAATTATGTGTCCAAACTATACCATAGGGAAAATGTTATACGGAGTACTTCGTATTTTTTATTCTTATTTATATACTCCAGGTTTCACTAATTGTCAAAATAGTCGGGTGTTTTACGGAGTACAATTGTCAAAAAGCAAAATTTGAAAGAGGAGATTGTCCTTCAAAATTCCTGTTTATTCCGTAGAAAATATCAAAAGCTTGGGAGGCCGGTAAGCAAATGTGCAACTCTAGGGATTCTTATGAGGTGAATTATTCAACAAAGCAGATTCATATTCTTTTTTCAACAAGTTATACTTGAATACGAAATACTCCGTATATCTGTATATTGCAAAAGTTTATTTCCAGTTAGCCAA

Coding sequence (CDS)

ATGTATGTGGTAAAAAAGTACAGTATTGAAATGAGATCTGTCACTAATTTTGTTTTTCACAAGATCTACTCCGTACAGCCAAAATCCTTATTCATCCTTCGCAGGTATCATTGCTTGTGTATACGGAATAGAGAAACCTTTGTGTCAAAGTGGAGACAATCAATACGAATTATAAGGAAGCAGGGGATGATACGGAAAAGAAACAACAGATTATGTGTCCACCCCCAAGGCCCCAAGTACCCTGTAAATTATGTGTCCAAACTATACCATAGGGAAAATGTTATACGGAGTACTTCGTATTTTTTATTCTTATTTATATACTCCAGGTTTCACTAA

Protein sequence

MYVVKKYSIEMRSVTNFVFHKIYSVQPKSLFILRRYHCLCIRNRETFVSKWRQSIRIIRKQGMIRKRNNRLCVHPQGPKYPVNYVSKLYHRENVIRSTSYFLFLFIYSRFH
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo13191.1Spo13191.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo13191.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo13191.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo13191.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo13191.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046339 diacylglycerol metabolic process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006468 protein phosphorylation
biological_process GO:0008152 metabolic process
biological_process GO:0051276 chromosome organization
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0008284 positive regulation of cell proliferation
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0043687 post-translational protein modification
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0030422 production of siRNA involved in RNA interference
biological_process GO:0009410 response to xenobiotic stimulus
biological_process GO:0035556 intracellular signal transduction
biological_process GO:0006281 DNA repair
biological_process GO:0045132 meiotic chromosome segregation
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0051604 protein maturation
biological_process GO:0009630 gravitropism
biological_process GO:0006810 transport
biological_process GO:0016070 RNA metabolic process
biological_process GO:0006312 mitotic recombination
biological_process GO:0009560 embryo sac egg cell differentiation
biological_process GO:0006370 7-methylguanosine mRNA capping
biological_process GO:0006266 DNA ligation
biological_process GO:0006310 DNA recombination
biological_process GO:0006260 DNA replication
biological_process GO:0035335 peptidyl-tyrosine dephosphorylation
biological_process GO:0098507 polynucleotide 5' dephosphorylation
biological_process GO:0006570 tyrosine metabolic process
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0009853 photorespiration
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0007094 mitotic spindle assembly checkpoint
biological_process GO:0051301 cell division
biological_process GO:0051788 response to misfolded protein
biological_process GO:0016049 cell growth
biological_process GO:0009395 phospholipid catabolic process
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0032482 Rab protein signal transduction
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0015996 chlorophyll catabolic process
biological_process GO:0006457 protein folding
biological_process GO:0009845 seed germination
biological_process GO:0061025 membrane fusion
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0000902 cell morphogenesis
biological_process GO:0006508 proteolysis
biological_process GO:0010540 basipetal auxin transport
biological_process GO:0018342 protein prenylation
biological_process GO:0006308 DNA catabolic process
biological_process GO:0007186 G-protein coupled receptor signaling pathway
biological_process GO:0048527 lateral root development
biological_process GO:0018345 protein palmitoylation
cellular_component GO:0005635 nuclear envelope
cellular_component GO:0005634 nucleus
cellular_component GO:0031461 cullin-RING ubiquitin ligase complex
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component GO:0022626 cytosolic ribosome
cellular_component GO:0005773 vacuole
cellular_component GO:0055029 nuclear DNA-directed RNA polymerase complex
cellular_component GO:0005730 nucleolus
cellular_component GO:0005834 heterotrimeric G-protein complex
cellular_component GO:0000785 chromatin
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0010287 plastoglobule
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0044444 cytoplasmic part
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0016020 membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009506 plasmodesma
molecular_function GO:0005525 GTP binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0005507 copper ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005488 binding
molecular_function GO:0015078 proton transmembrane transporter activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0019003 GDP binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0008138 protein tyrosine/serine/threonine phosphatase activity
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0004871 obsolete signal transducer activity
molecular_function GO:0004435 phosphatidylinositol phospholipase C activity
molecular_function GO:0005515 protein binding
molecular_function GO:0019905 syntaxin binding
molecular_function GO:0031625 ubiquitin protein ligase binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0017111 nucleoside-triphosphatase activity
molecular_function GO:0008233 peptidase activity
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0004725 protein tyrosine phosphatase activity
molecular_function GO:0003682 chromatin binding
molecular_function GO:0000386 second spliceosomal transesterification activity
molecular_function GO:0003727 single-stranded RNA binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0016887 ATPase activity
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005215 transporter activity
molecular_function GO:0003910 DNA ligase (ATP) activity
molecular_function GO:0004484 mRNA guanylyltransferase activity
molecular_function GO:0004651 polynucleotide 5'-phosphatase activity
molecular_function GO:0003924 GTPase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo224580.74Barchart | Table
Spo250130.72Barchart | Table
Spo098420.72Barchart | Table
Spo011460.71Barchart | Table
Spo030020.70Barchart | Table
Spo037350.70Barchart | Table
Spo252340.70Barchart | Table
Spo242320.70Barchart | Table
Spo229700.70Barchart | Table
Spo125110.70Barchart | Table
Spo010480.70Barchart | Table
Spo135140.70Barchart | Table
Spo109350.70Barchart | Table
Spo171900.69Barchart | Table
Spo119930.69Barchart | Table
Spo233550.69Barchart | Table
Spo070920.69Barchart | Table
Spo074150.69Barchart | Table
Spo259360.69Barchart | Table
Spo024990.69Barchart | Table
Spo171230.69Barchart | Table
Spo038650.68Barchart | Table
Spo013130.68Barchart | Table
Spo047030.68Barchart | Table
Spo070790.68Barchart | Table
Spo076940.68Barchart | Table
Spo077000.68Barchart | Table
Spo144680.68Barchart | Table
Spo164210.68Barchart | Table
Spo175890.68Barchart | Table
Spo228590.68Barchart | Table
Spo234340.68Barchart | Table
Spo056030.67Barchart | Table
Spo135340.67Barchart | Table
Spo171540.67Barchart | Table
Spo077200.67Barchart | Table
Spo172350.67Barchart | Table
Spo181380.67Barchart | Table
Spo183300.67Barchart | Table
Spo178890.67Barchart | Table
Spo051240.67Barchart | Table
Spo181790.67Barchart | Table
Spo111900.67Barchart | Table
Spo152200.67Barchart | Table
Spo101620.66Barchart | Table
Spo133180.66Barchart | Table
Spo085410.66Barchart | Table
Spo243620.66Barchart | Table
Spo150120.66Barchart | Table
Spo041040.66Barchart | Table
Spo083550.66Barchart | Table
Spo007830.66Barchart | Table
Spo192710.66Barchart | Table
Spo216280.66Barchart | Table
Spo229400.66Barchart | Table
Spo056740.66Barchart | Table
Spo233770.66Barchart | Table
Spo016630.66Barchart | Table
Spo116800.66Barchart | Table
Spo118020.66Barchart | Table
Spo109660.65Barchart | Table
Spo135270.65Barchart | Table
Spo173860.65Barchart | Table
Spo145880.65Barchart | Table
Spo141720.65Barchart | Table
Spo127490.65Barchart | Table
Spo088840.65Barchart | Table
Spo067150.65Barchart | Table
Spo253020.65Barchart | Table
Spo134920.65Barchart | Table