Spo13230 (gene)

Overview
NameSpo13230
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr4 : 12082385 .. 12082894 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCAACTAATGGAAGGAGAGACAAGGAAGAGGAAGATAACAAACATTTGCGGTGAAGACGAAGAAGAAGATGAAGATATAAAGATGGAGAAATTCTTTGCTCTTATAAGGAGTGCAAAGGATATCCGTGATCAGCTTCTTGATGCAGAAGGATCATCCAAAGAGAGAGCGAAGAAGGCGGTCGCTACGGCGGAGAAGAAGGCGGAGGTGGCGGTGGCTGGTAGAGCCGCTCAAAGGAATAATGAAAAGGGTTTTGCTAGTTTCGCAACCGCAACAGCAGCAGCAGTTGATGCAGACGCGGTTGTTCCTAATAAAAAAGCTGCGGCTGCGGCGGCGGCGGCGGCTGCTGCTGCGGCGGCAGATTCTGCTGCTAGGATTAGCAGATCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGAAGAGAACAGCAAAAAAGCAGCAGATCAGAAGAATGAATTTAAAGGGGGTAGGATTTTCTTGGATCTTAATCTTTCCCTTTAA

mRNA sequence

ATGAGGCAACTAATGGAAGGAGAGACAAGGAAGAGGAAGATAACAAACATTTGCGGTGAAGACGAAGAAGAAGATGAAGATATAAAGATGGAGAAATTCTTTGCTCTTATAAGGAGTGCAAAGGATATCCGTGATCAGCTTCTTGATGCAGAAGGATCATCCAAAGAGAGAGCGAAGAAGGCGGTCGCTACGGCGGAGAAGAAGGCGGAGGTGGCGGTGGCTGGTAGAGCCGCTCAAAGGAATAATGAAAAGGGTTTTGCTAGTTTCGCAACCGCAACAGCAGCAGCAGTTGATGCAGACGCGGTTGTTCCTAATAAAAAAGCTGCGGCTGCGGCGGCGGCGGCGGCTGCTGCTGCGGCGGCAGATTCTGCTGCTAGGATTAGCAGATCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGAAGAGAACAGCAAAAAAGCAGCAGATCAGAAGAATGAATTTAAAGGGGGTAGGATTTTCTTGGATCTTAATCTTTCCCTTTAA

Coding sequence (CDS)

ATGAGGCAACTAATGGAAGGAGAGACAAGGAAGAGGAAGATAACAAACATTTGCGGTGAAGACGAAGAAGAAGATGAAGATATAAAGATGGAGAAATTCTTTGCTCTTATAAGGAGTGCAAAGGATATCCGTGATCAGCTTCTTGATGCAGAAGGATCATCCAAAGAGAGAGCGAAGAAGGCGGTCGCTACGGCGGAGAAGAAGGCGGAGGTGGCGGTGGCTGGTAGAGCCGCTCAAAGGAATAATGAAAAGGGTTTTGCTAGTTTCGCAACCGCAACAGCAGCAGCAGTTGATGCAGACGCGGTTGTTCCTAATAAAAAAGCTGCGGCTGCGGCGGCGGCGGCGGCTGCTGCTGCGGCGGCAGATTCTGCTGCTAGGATTAGCAGATCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGAAGAGAACAGCAAAAAAGCAGCAGATCAGAAGAATGAATTTAAAGGGGGTAGGATTTTCTTGGATCTTAATCTTTCCCTTTAA

Protein sequence

MRQLMEGETRKRKITNICGEDEEEDEDIKMEKFFALIRSAKDIRDQLLDAEGSSKERAKKAVATAEKKAEVAVAGRAAQRNNEKGFASFATATAAAVDADAVVPNKKAAAAAAAAAAAAAADSAARISRSAAATAAAAAAAAEENSKKAADQKNEFKGGRIFLDLNLSL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo13230.1Spo13230.1mRNA


Homology
[Close]
BLAST of Spo13230.1 vs. NCBI nr
Match: gi|902222537|gb|KNA19200.1| (hypothetical protein SOVF_063840 [Spinacia oleracea])

HSP 1 Score: 260.8 bits (665), Expect = 1.700e-66
Identity = 163/169 (96.45%), Postives = 163/169 (96.45%), Query Frame = 1 

		  

Query: 1   MRQLMEGETRKRKITNICGEDEEEDEDIKMEKFFALIRSAKDIRDQLLDAEGSSKERAKK 60
           MRQLMEGETRKRKITNICGEDEEEDEDIKMEKFFALIRSA DIRDQLLDAEGSSKERAKK
Sbjct: 1   MRQLMEGETRKRKITNICGEDEEEDEDIKMEKFFALIRSANDIRDQLLDAEGSSKERAKK 60

Query: 61  AVATAEKKAEVAVAGRAAQRNNEKGFASFATATAAAVDADAVVPNKKAAAAAAAAAAAAA 120
           AVATAEKKAEVAVAGRAAQRNNEKGFASFATATAAAVDADAVVPNKKAAAAAAAAAAAAA
Sbjct: 61  AVATAEKKAEVAVAGRAAQRNNEKGFASFATATAAAVDADAVVPNKKAAAAAAAAAAAAA 120

Query: 121 ADSAARISRSAAATAAAAAAAAEENSKKAADQKNEFKGGRIFLDLNLSL 170
           ADSAARISRS     AAAAAAAEENSKKAADQKNEFKGGRIFLDLNLSL
Sbjct: 121 ADSAARISRS-----AAAAAAAEENSKKAADQKNEFKGGRIFLDLNLSL 164
[Close]
BLAST of Spo13230.1 vs. NCBI nr
Match: gi|731327476|ref|XP_010674540.1| (PREDICTED: uncharacterized protein LOC104890664 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 107.1 bits (266), Expect = 3.100e-20
Identity = 87/175 (49.71%), Postives = 101/175 (57.71%), Query Frame = 1 

		  

Query: 1   MRQLMEGETRKRKITNICGEDEEEDEDIKMEKFFALIRSAKDIRDQLLDAEGSSKERAKK 60
           MR +MEGET+KRKI N+  ED+EEDEDIK+EKFFALIRSAKDIRDQL DAEG SK R KK
Sbjct: 1   MRLIMEGETKKRKIINMA-EDDEEDEDIKIEKFFALIRSAKDIRDQLFDAEG-SKHRVKK 60

Query: 61  AVATAEKKAEVAVAGRAAQRNNEKGFASFATATAAAVDADAVVPNKKAAAAAAAAAAAAA 120
           AV T +KK+E+AV        N+  F   A     A D                   + A
Sbjct: 61  AVTTEKKKSEIAV----KTVKNDNSFTEVAVKQVVAAD-------------------STA 120

Query: 121 ADSAARISRSAAATAAAAAAAAEENSKKAADQKN------EFKGGRIFLDLNLSL 170
           A + A+ISRS          + EENS K A   N       +KGGRIFLDLNLSL
Sbjct: 121 AGANAKISRS----------SPEENSNKTATDYNSINNNSNYKGGRIFLDLNLSL 140
[Close]
BLAST of Spo13230.1 vs. NCBI nr
Match: gi|870862981|gb|KMT14169.1| (hypothetical protein BVRB_4g079870 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 88.2 bits (217), Expect = 1.500e-14
Identity = 75/156 (48.08%), Postives = 86/156 (55.13%), Query Frame = 1 

		  

Query: 20  EDEEEDEDIKMEKFFALIRSAKDIRDQLLDAEGSSKERAKKAVATAEKKAEVAVAGRAAQ 79
           ED+EEDEDIK+EKFFALIRSAKDIRDQL DAEG SK R KKAV T +KK+E+AV      
Sbjct: 3   EDDEEDEDIKIEKFFALIRSAKDIRDQLFDAEG-SKHRVKKAVTTEKKKSEIAV----KT 62

Query: 80  RNNEKGFASFATATAAAVDADAVVPNKKAAAAAAAAAAAAAADSAARISRSAAATAAAAA 139
             N+  F   A     A D                   + AA + A+ISRS         
Sbjct: 63  VKNDNSFTEVAVKQVVAAD-------------------STAAGANAKISRS--------- 122

Query: 140 AAAEENSKKAADQKN------EFKGGRIFLDLNLSL 170
            + EENS K A   N       +KGGRIFLDLNLSL
Sbjct: 123 -SPEENSNKTATDYNSINNNSNYKGGRIFLDLNLSL 124
[Close]
BLAST of Spo13230.1 vs. NCBI nr
Match: gi|870839985|gb|KMS94749.1| (hypothetical protein BVRB_015670 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 65.5 bits (158), Expect = 1.000e-7
Identity = 66/135 (48.89%), Postives = 75/135 (55.56%), Query Frame = 1 

		  

Query: 20  EDEEEDEDIKMEKFFALIRSAKDIRDQLLDAEGSSKERAKKAVATAEKKAEVAVAGRAAQ 79
           ED+EEDED+K+EKFFALIRSAKDI DQL DAEG SK R KKAV T +KK+EVAV      
Sbjct: 3   EDDEEDEDVKIEKFFALIRSAKDISDQLFDAEG-SKHRVKKAVTTEKKKSEVAV----KT 62

Query: 80  RNNEKGFASFATATAAAVDADAVVPNKKAAAAAAAAAAAAAADSAARISRSAAATAAAAA 139
             N+  F          VD   VV           AA +  ADS A+ISRS         
Sbjct: 63  VKNDNNFTE--------VDVKQVV-----------AADSTVADS-AKISRS--------- 102

Query: 140 AAAEENSKKAADQKN 155
            + EENS KAA   N
Sbjct: 123 -SPEENSNKAAADYN 102
[Close]
BLAST of Spo13230.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RI94_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_063840 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.200e-66
Identity = 163/169 (96.45%), Postives = 163/169 (96.45%), Query Frame = 1 

		  

Query: 1   MRQLMEGETRKRKITNICGEDEEEDEDIKMEKFFALIRSAKDIRDQLLDAEGSSKERAKK 60
           MRQLMEGETRKRKITNICGEDEEEDEDIKMEKFFALIRSA DIRDQLLDAEGSSKERAKK
Sbjct: 1   MRQLMEGETRKRKITNICGEDEEEDEDIKMEKFFALIRSANDIRDQLLDAEGSSKERAKK 60

Query: 61  AVATAEKKAEVAVAGRAAQRNNEKGFASFATATAAAVDADAVVPNKKAAAAAAAAAAAAA 120
           AVATAEKKAEVAVAGRAAQRNNEKGFASFATATAAAVDADAVVPNKKAAAAAAAAAAAAA
Sbjct: 61  AVATAEKKAEVAVAGRAAQRNNEKGFASFATATAAAVDADAVVPNKKAAAAAAAAAAAAA 120

Query: 121 ADSAARISRSAAATAAAAAAAAEENSKKAADQKNEFKGGRIFLDLNLSL 170
           ADSAARISRS     AAAAAAAEENSKKAADQKNEFKGGRIFLDLNLSL
Sbjct: 121 ADSAARISRS-----AAAAAAAEENSKKAADQKNEFKGGRIFLDLNLSL 164
[Close]
BLAST of Spo13230.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CQ89_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g079870 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.000e-14
Identity = 75/156 (48.08%), Postives = 86/156 (55.13%), Query Frame = 1 

		  

Query: 20  EDEEEDEDIKMEKFFALIRSAKDIRDQLLDAEGSSKERAKKAVATAEKKAEVAVAGRAAQ 79
           ED+EEDEDIK+EKFFALIRSAKDIRDQL DAEG SK R KKAV T +KK+E+AV      
Sbjct: 3   EDDEEDEDIKIEKFFALIRSAKDIRDQLFDAEG-SKHRVKKAVTTEKKKSEIAV----KT 62

Query: 80  RNNEKGFASFATATAAAVDADAVVPNKKAAAAAAAAAAAAAADSAARISRSAAATAAAAA 139
             N+  F   A     A D                   + AA + A+ISRS         
Sbjct: 63  VKNDNSFTEVAVKQVVAAD-------------------STAAGANAKISRS--------- 122

Query: 140 AAAEENSKKAADQKN------EFKGGRIFLDLNLSL 170
            + EENS K A   N       +KGGRIFLDLNLSL
Sbjct: 123 -SPEENSNKTATDYNSINNNSNYKGGRIFLDLNLSL 124
[Close]
BLAST of Spo13230.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B164_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_015670 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.300e-8
Identity = 66/135 (48.89%), Postives = 75/135 (55.56%), Query Frame = 1 

		  

Query: 20  EDEEEDEDIKMEKFFALIRSAKDIRDQLLDAEGSSKERAKKAVATAEKKAEVAVAGRAAQ 79
           ED+EEDED+K+EKFFALIRSAKDI DQL DAEG SK R KKAV T +KK+EVAV      
Sbjct: 3   EDDEEDEDVKIEKFFALIRSAKDISDQLFDAEG-SKHRVKKAVTTEKKKSEVAV----KT 62

Query: 80  RNNEKGFASFATATAAAVDADAVVPNKKAAAAAAAAAAAAAADSAARISRSAAATAAAAA 139
             N+  F          VD   VV           AA +  ADS A+ISRS         
Sbjct: 63  VKNDNNFTE--------VDVKQVV-----------AADSTVADS-AKISRS--------- 102

Query: 140 AAAEENSKKAADQKN 155
            + EENS KAA   N
Sbjct: 123 -SPEENSNKAAADYN 102
The following BLAST results are available for this feature:
BLAST of Spo13230.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 4
Match NameE-valueIdentityDescription
gi|902222537|gb|KNA19200.1|1.7e-6696.4hypothetical protein SOVF_0638... [more]
gi|731327476|ref|XP_010674540.1|3.1e-2049.7PREDICTED: uncharacterized pro... [more]
gi|870862981|gb|KMT14169.1|1.5e-1448.0hypothetical protein BVRB_4g07... [more]
gi|870839985|gb|KMS94749.1|1.0e-748.8hypothetical protein BVRB_0156... [more]
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BLAST of Spo13230.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9RI94_SPIOL1.2e-6696.4Uncharacterized protein OS=Spi... [more]
A0A0J8CQ89_BETVU1.0e-1448.0Uncharacterized protein OS=Bet... [more]
A0A0J8B164_BETVU7.3e-848.8Uncharacterized protein OS=Bet... [more]
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BLAST of Spo13230.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo13230.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
No results

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010112 regulation of systemic acquired resistance
biological_process GO:0010207 photosystem II assembly
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0006364 rRNA processing
biological_process GO:0006771 riboflavin metabolic process
biological_process GO:0010114 response to red light
biological_process GO:0010218 response to far red light
biological_process GO:0009637 response to blue light
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0006464 cellular protein modification process
biological_process GO:0010206 photosystem II repair
biological_process GO:0009657 plastid organization
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006979 response to oxidative stress
biological_process GO:0030091 protein repair
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0019497 hexachlorocyclohexane metabolic process
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0031977 thylakoid lumen
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
molecular_function GO:0008113 peptide-methionine (S)-S-oxide reductase activity
molecular_function GO:0003993 acid phosphatase activity
molecular_function GO:0003743 translation initiation factor activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo097690.70Barchart | Table
Spo115240.68Barchart | Table
Spo046530.66Barchart | Table
Spo095540.65Barchart | Table