Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGGCAGGTGAGCCCAAGCGATGAGAGAGAAAGATACGAGAGGTGAGAGAAATTGAAGGTACGATGGAGATAATCCTGGTGGGGAGACCGGGAGAGGATATAGAGAGGGTGGAAACGTAAATACTCTATTGTTAAGGAAAATGACAAAAAAAACATGAAGGATTTTAGGGGCATTTTAGTAATCTAACTATTGGGTGAATAGTATTCAATGTTCAAGGCTTTAGAAGTGTTATGATTCTTATTTACAAAGGGTGTACAATAAATATTGTACACCGGAGTACAAGTTAACTAAAAATGTTTAAAAGTTAAGCTTATATATGTAAAAGTTATCTATTTTTTAGTGATAAATTTTTTCATTTCAGTAAAACATATTTTTCAAAACCACTAATAAGGTATAACATTAATCATCTAACCATTTCTATCTTTTTTTTACTAATATAAAAGTTACTCAAAACTAGATTAAAGTTACCAAAAAATGGATAAAAGTTATCTTGGTGTATAATAAGTTTATTGTACACCTTATGCGCGCAAGACCTTTTGGTACTTTTTTTTTCTTCTTATCCTTTTTACATTTGTTGCCAACTATAAGTTCATGTTGGTTGTGTTGCTCATTATGAGTCATACGATAATGGTTATCTAATTACTCGCTAGTCAGACTCGTAATCATAGGGGTGGCTAATTACTCACTAGTCAGACTCGTCAGCACATTTCCTAAGTCAGAGCGACACTTATTTGGCAGATGGAGTATGTGTCATTATGATTAAAATTAATATATGTTTGTAAACTTTGTTCATGATTTTCCGATTTGTCCCAAGTTTTGAGAAAACTTGCCTTATAATTAAAGTTTTATATGTACATAGAAATTTTCCTACTTAAAGAGAATCCAATCCCCAAGTCCGTTCTCATCCCGGAACTTGGTACAAAATTTAATTTCAAAATTCAAACACGAGCTCTCAAAACGGGTACCACAATTGGTCTCTGAAGCTTATTTCCAGTCAAAATGACATTAAGAAATCCAAATTCGGGCGCCGACCCACAAAACCGAGCACCCGGGCTCCGACCCGTAAAACCGAGTCCAAAACTATGCAAAATCGCGCAAATCTCCATATGTGATATGTACATGCACTCATATCAAAATCCTCATCTTCTCTATTAATTTCGAGCCAAAAATAGCAAGATTTTCTGACCAGACGAATTCTATAACTAAAATTTTGATAAGTCCGGTCTAGGAAAATTGGCCTAAAAGAATGCCCCTTAGCCCGTCATTTTTCGGGCCGGGTATAAGATGATCAGGTCTAATATTTTCCAATGACATAATTTTTATTAGTGAATGAAATAGTTAATCAATTAAAAATAGGACAAATGGGAAGCAAGAAGAAGCAGCTTGGTGTCACTAGCTTTGCTATATATGGCCTATATGGCTATATGGCTATATGGTACGACAAAGTGTTTAATGGCAAGGACTTTAGCTCCTCATGCCATCATTGCGGATAGGGTGCTTAGGCCATAGGCTTGCAGAGGACTTCAACAAGTATGCTGCTCGTATATACGGGATGACTCGATCGTAGGAAAAAGTACCAAGCTCTAACTAAGGTACGAACTACGAAGTATTAGACTATTAGAGTATTAGGTATGGCACACCTCAACTCCCTCTAATGTTGTGAAGCTGAATTGTGATGTATGTTTGGCTAATATTGTGATGTAGATCGGTTTTGATTTAGACATGATCTGCATATATCGGTTCTATTCTGGATATGAATTGTATTGATCAGTTCTGATTTGAACATATCGGTTTTGATCCGTATAAATCGATTATGATTTGGACATGATCTGATTAATGCAAAATGTTAAAATGGTGCGAGTATTTCGGGACGGAGGGAGTAAGATTTTAAGGTGTAATATTGCCACACTTGGTCACTTTGTAGGTTTTATTTGCACTCAGCATGTTTTTCTATTTTTTTTTTAATACTCCCTCCGTCCCGGAATACTTGAAACCGTTTGTCCGACACAGAGTTTAATTCATTATAATTGACTTCTTATTTAATTGAAAGGTAGTTAGTAGTGAGGTATTTTTTTAATATAGATAGTGGTATGTGGTGTCATGAATTTTCTAATGTTTATTTGGGGTAGTAAGTTGTTGGTGGGCCCTTAGGTAAGGTGAGAAAATAATAAAATATTATGTAAAGTTTCTATTTTTAGAAGCGTTTCAAGTAATACGGGACGACCCGATAAGGAAAGCGTTTCAAGTATTCCGGGACGGAGGGAGTAAAATTTAGGAGCCTCTTCTTTTCACTTGAATAAATTTTTATTTTTGTTTTTTGTCTATGTTCGAACTCCAAACCACATAGTCGCAGTGCTGTATCCCTTCTTCTGTTAAAACCCTCGAAGAAAAGCAAGCATCACCATTCACCACCTCTAGTCGGCGGCGGCTCTGCCAACCACCACTCCTTATGTGCTGCTGCTATTCTCGGTAATTTTATAGAACTATTTTGTATCGATTTTTGTTATTTTTTTTTGTATTTTGTATTGATTCAATGATGTAATTTTCTAAATTGTTAAATATATTCTGTTGGATTTTTTTGTTAACTTTGTTTTGATATGATTTTCATAAGATTGATTAGGATTACTGATTCGATTTTTTTTTGACATGGTGGGTTTCAAATTGTTAAAAGTACTTCTGCTGGTATATTTTGGTGTTGTTTTTGTCTAATTATTCTATACCCATTTCATGATTCTACTTGAAATTTGTATAATCATTTTTGATATGATTCGATTTTTCTGACAATCTCCTTGGGCACAGGCCGGCGCCCCTCCTGCTCTGCCTCAGGGACCGGCCTGAGCTTGAGAAAATGTAGGTAGTGGTGGTTTTGTTCATGAGAAGATAATGTATTTGGTCAAATTTGAACCCCTGAATCTTTAAGAGTGAAATGTCAGAAATATAGAATGCTTTCACGGTATAACTAATGAATTATGGTTTAAAACACGAAATAAGGAGCTGATAAACTTATTTCGGCGTAATGCCTCTAGTTTTTAAACATGGCCTTGTTAATTTTGGGGTTATGTTCTAGATTAACGAGTTCTTGTAATAACACTCTAGTTTTTTTTGTTTATGAATGATCTTTTTCCATGCTTTTGTTCTTGCCTTGTTTACTGATTGTTGCTGACAGAATGATCTCCATTTTGGCAGCTAGACCCTCAAATTGAGCAGGCTTTAGTAGCAATATCTTGCTTTCTAATGAGCTCTAGATCCAAAAACTTCCGTCGTCGAGCTGGTAATGATGAAGAAGATAATGAAACTAATGGTAGTGGAGTTCCATCTAAAACTACCACGAAACCATCTTTGAATAAAGCTACATCATCAGAAAAACCAAAGAAAACCCACCAAAAGCTTCTAAGTTTTGCTGAAGATGAAGAAAATGAAACACCATTTTCTCGTCCGCAAAAATCTTCTTCATCCCGTCCCTCCAAGTCCAGTTCCTCTCATCAAATTACATCTCTCAAGGACCGTCGTGGGTCTTCCTCTAGTTCACTTCCCTCTAACGTCCAACCTCAAGCTGGTCAATATACAAAAGAAGCTCTCCTTGAGCTCCAAAAGAACACTAAAACCCTTGTTAGCTCTAGGACAAGACTGCCAGCATCAGACACAAAACCTAGTTCTTCCTTGGAGCCTGTCATTGTTTTGAAAGGTCGTGTAAAACCTGTTCTGGAGACTGGGAATGATGGTGATGAGCTCAATGAAGACAACCCTGAAAAGGATGAAGAGACTGCTACCCTGAAGAGAGAGAAGGATATGGATCTCCTAGATCAAGCAACAATTAATGCCATTCGGGCTAAGAGAGAGAAACTTCGGCAATCACGGGCTGCAGCACCAGATTATATATCGTTGGATGCTGGAAGCAATCATGGAGAAGCAGAGGGGTTAAGTGACGAGGAACCAGAATTTCAAACTCGAATTGCTATGCTTGGTGAGAAGGTAGATGGTCCCAAAAAGGGTGTATTTGAAGATGTGGATGAAAGATCAGTGCGTGCTGGGCAGTTAACCATGGATGATGATGAAGACGAGGAAGAGAGAAAATGGGAAGAGGAGCAGTTTAGGAAAGGTCTGGGCAAGAGAATGGATGAAGGACCTACTGCAGTCAGCAGAAATGCATCATCAGCTCAATCTGCTCAACCTCAAAGTTATATGTACACAACACCAGAGTCTTATTCATCTGTTGCCTGTATTCCTCCTGCTGGGCCACCCAGCATTGGAGGGGCAATTGGTGGTGTACAGGGCGTTGGGACAATGTCCATTTCTCAGCAGGCTAAAATTGCCAAACTAGCTTTTCAAGATAACTTGAAGAGACTTAAGGCATGTGTCTGTTTTTGCCTAAATTTATCAATTTTTCTTGCGTAACTTGTTGACTTGAGATAATTGTTGAAGTTCCAGGGATAGATCTAGGACCTTCACAATGGATTGGCAAAATAAAATTACACTGACAATGTATTTTCTTTCTTCTACTTGTTGTTAGGTATATATGTTCTTAAATGTGTGTAATCAACCATAGCACTATAACCATAACCCCAATCATTATCACCCCATCCCAAATGAATAGGTGATTGTATTATTGTTTAAAATCTTTTGGGAAGTTAGAAAAGTGAGAGTATTCCCCTATGGTTGGGTCACTTGCGTGGGTTGGCTAGTGGCTACTCGTGTTTCTTGCTGGATTTGATTGTTCAATATTTAGCCTTTGGGCTAGGGCTTCTTCTGCTGCTTTTTCCCCCGTTCCCCCTTAGCTTACTAGTTCTATCCTTTCCGGCCTGATTTTCATCAGATAAAGAAATAAAATAATACCTCGTAATAAGGGCTGTTGGAAATTACGACCTTGTGCAAATATATGCTAATCCAGATTACAGCTTTTTTGGTCAAGTCTTATGCTTGATAAGAAATTTTTCCATCTTATAATAAGTGTAAAGCTTGGCTGTTCTGTCCCTTCCATCTTTAATTTGCAGTCAACCTGTAATAGAACTTATTTGTGTTAAAGAGCCAACTTGCGGCGTCATGCTGTTATTAATTTTTTCCGGGGTATTTGGTATCTGTTTCCACACACCTTTAATGCTTATGAACTATAATTTTTTTTGTTCTTCGCTATGTTGTACAAGGGATGGCTTTTTTTGTTCTCATACATTTTTCTTGATTTCTGCCCCCTTCTTTGTTTCCAGGAAACTCATGTAAAAACGATGACTTCATTGGCTCGTGTTGATGAAAGTTTATCTGCATCATTGGTGAATATCACTGTACTTGAGAAGTCTTCATCTGATGCTGGAGAGAAGTATATTTTCATGCAAAGGCTCCGTGACTTTGTTTCTGTTATATGTGACTTTTTGCAGGTATAG ATGTGGCAGCTAGACCCTCAAATTGAGCAGGCTTTAGTAGCAATATCTTGCTTTCTAATGAGCTCTAGATCCAAAAACTTCCGTCGTCGAGCTGGTAATGATGAAGAAGATAATGAAACTAATGGTAGTGGAGTTCCATCTAAAACTACCACGAAACCATCTTTGAATAAAGCTACATCATCAGAAAAACCAAAGAAAACCCACCAAAAGCTTCTAAGTTTTGCTGAAGATGAAGAAAATGAAACACCATTTTCTCGTCCGCAAAAATCTTCTTCATCCCGTCCCTCCAAGTCCAGTTCCTCTCATCAAATTACATCTCTCAAGGACCGTCGTGGGTCTTCCTCTAGTTCACTTCCCTCTAACGTCCAACCTCAAGCTGGTCAATATACAAAAGAAGCTCTCCTTGAGCTCCAAAAGAACACTAAAACCCTTGTTAGCTCTAGGACAAGACTGCCAGCATCAGACACAAAACCTAGTTCTTCCTTGGAGCCTGTCATTGTTTTGAAAGGTCGTGTAAAACCTGTTCTGGAGACTGGGAATGATGGTGATGAGCTCAATGAAGACAACCCTGAAAAGGATGAAGAGACTGCTACCCTGAAGAGAGAGAAGGATATGGATCTCCTAGATCAAGCAACAATTAATGCCATTCGGGCTAAGAGAGAGAAACTTCGGCAATCACGGGCTGCAGCACCAGATTATATATCGTTGGATGCTGGAAGCAATCATGGAGAAGCAGAGGGGTTAAGTGACGAGGAACCAGAATTTCAAACTCGAATTGCTATGCTTGGTGAGAAGGTAGATGGTCCCAAAAAGGGTGTATTTGAAGATGTGGATGAAAGATCAGTGCGTGCTGGGCAGTTAACCATGGATGATGATGAAGACGAGGAAGAGAGAAAATGGGAAGAGGAGCAGTTTAGGAAAGGTCTGGGCAAGAGAATGGATGAAGGACCTACTGCAGTCAGCAGAAATGCATCATCAGCTCAATCTGCTCAACCTCAAAGTTATATGTACACAACACCAGAGTCTTATTCATCTGTTGCCTGTATTCCTCCTGCTGGGCCACCCAGCATTGGAGGGGCAATTGGTGGTGTACAGGGCGTTGGGACAATGTCCATTTCTCAGCAGGCTAAAATTGCCAAACTAGCTTTTCAAGATAACTTGAAGAGACTTAAGGAAACTCATGTAAAAACGATGACTTCATTGGCTCGTGTTGATGAAAGTTTATCTGCATCATTGGTGAATATCACTGTACTTGAGAAGTCTTCATCTGATGCTGGAGAGAAGTATATTTTCATGCAAAGGCTCCGTGACTTTGTTTCTGTTATATGTGACTTTTTGCAGGTATAG ATGTGGCAGCTAGACCCTCAAATTGAGCAGGCTTTAGTAGCAATATCTTGCTTTCTAATGAGCTCTAGATCCAAAAACTTCCGTCGTCGAGCTGGTAATGATGAAGAAGATAATGAAACTAATGGTAGTGGAGTTCCATCTAAAACTACCACGAAACCATCTTTGAATAAAGCTACATCATCAGAAAAACCAAAGAAAACCCACCAAAAGCTTCTAAGTTTTGCTGAAGATGAAGAAAATGAAACACCATTTTCTCGTCCGCAAAAATCTTCTTCATCCCGTCCCTCCAAGTCCAGTTCCTCTCATCAAATTACATCTCTCAAGGACCGTCGTGGGTCTTCCTCTAGTTCACTTCCCTCTAACGTCCAACCTCAAGCTGGTCAATATACAAAAGAAGCTCTCCTTGAGCTCCAAAAGAACACTAAAACCCTTGTTAGCTCTAGGACAAGACTGCCAGCATCAGACACAAAACCTAGTTCTTCCTTGGAGCCTGTCATTGTTTTGAAAGGTCGTGTAAAACCTGTTCTGGAGACTGGGAATGATGGTGATGAGCTCAATGAAGACAACCCTGAAAAGGATGAAGAGACTGCTACCCTGAAGAGAGAGAAGGATATGGATCTCCTAGATCAAGCAACAATTAATGCCATTCGGGCTAAGAGAGAGAAACTTCGGCAATCACGGGCTGCAGCACCAGATTATATATCGTTGGATGCTGGAAGCAATCATGGAGAAGCAGAGGGGTTAAGTGACGAGGAACCAGAATTTCAAACTCGAATTGCTATGCTTGGTGAGAAGGTAGATGGTCCCAAAAAGGGTGTATTTGAAGATGTGGATGAAAGATCAGTGCGTGCTGGGCAGTTAACCATGGATGATGATGAAGACGAGGAAGAGAGAAAATGGGAAGAGGAGCAGTTTAGGAAAGGTCTGGGCAAGAGAATGGATGAAGGACCTACTGCAGTCAGCAGAAATGCATCATCAGCTCAATCTGCTCAACCTCAAAGTTATATGTACACAACACCAGAGTCTTATTCATCTGTTGCCTGTATTCCTCCTGCTGGGCCACCCAGCATTGGAGGGGCAATTGGTGGTGTACAGGGCGTTGGGACAATGTCCATTTCTCAGCAGGCTAAAATTGCCAAACTAGCTTTTCAAGATAACTTGAAGAGACTTAAGGAAACTCATGTAAAAACGATGACTTCATTGGCTCGTGTTGATGAAAGTTTATCTGCATCATTGGTGAATATCACTGTACTTGAGAAGTCTTCATCTGATGCTGGAGAGAAGTATATTTTCATGCAAAGGCTCCGTGACTTTGTTTCTGTTATATGTGACTTTTTGCAGGTATAG MWQLDPQIEQALVAISCFLMSSRSKNFRRRAGNDEEDNETNGSGVPSKTTTKPSLNKATSSEKPKKTHQKLLSFAEDEENETPFSRPQKSSSSRPSKSSSSHQITSLKDRRGSSSSSLPSNVQPQAGQYTKEALLELQKNTKTLVSSRTRLPASDTKPSSSLEPVIVLKGRVKPVLETGNDGDELNEDNPEKDEETATLKREKDMDLLDQATINAIRAKREKLRQSRAAAPDYISLDAGSNHGEAEGLSDEEPEFQTRIAMLGEKVDGPKKGVFEDVDERSVRAGQLTMDDDEDEEERKWEEEQFRKGLGKRMDEGPTAVSRNASSAQSAQPQSYMYTTPESYSSVACIPPAGPPSIGGAIGGVQGVGTMSISQQAKIAKLAFQDNLKRLKETHVKTMTSLARVDESLSASLVNITVLEKSSSDAGEKYIFMQRLRDFVSVICDFLQV Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo13247.1 vs. NCBI nr
Match: gi|902166786|gb|KNA07271.1| (hypothetical protein SOVF_173440, partial [Spinacia oleracea]) HSP 1 Score: 788.1 bits (2034), Expect = 8.100e-225 Identity = 428/428 (100.00%), Postives = 428/428 (100.00%), Query Frame = 1
BLAST of Spo13247.1 vs. NCBI nr
Match: gi|731351490|ref|XP_010687066.1| (PREDICTED: LOW QUALITY PROTEIN: PAX3- and PAX7-binding protein 1-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 615.5 bits (1586), Expect = 7.200e-173 Identity = 347/449 (77.28%), Postives = 387/449 (86.19%), Query Frame = 1
BLAST of Spo13247.1 vs. NCBI nr
Match: gi|731370629|ref|XP_010647970.1| (PREDICTED: PAX3- and PAX7-binding protein 1 [Vitis vinifera]) HSP 1 Score: 405.6 bits (1041), Expect = 1.100e-109 Identity = 266/463 (57.45%), Postives = 326/463 (70.41%), Query Frame = 1
BLAST of Spo13247.1 vs. NCBI nr
Match: gi|297737868|emb|CBI27069.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 383.6 bits (984), Expect = 4.600e-103 Identity = 252/432 (58.33%), Postives = 312/432 (72.22%), Query Frame = 1
BLAST of Spo13247.1 vs. NCBI nr
Match: gi|645276184|ref|XP_008243166.1| (PREDICTED: PAX3- and PAX7-binding protein 1 [Prunus mume]) HSP 1 Score: 374.0 bits (959), Expect = 3.600e-100 Identity = 255/470 (54.26%), Postives = 317/470 (67.45%), Query Frame = 1
BLAST of Spo13247.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QL18_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_173440 PE=4 SV=1) HSP 1 Score: 788.1 bits (2034), Expect = 5.600e-225 Identity = 428/428 (100.00%), Postives = 428/428 (100.00%), Query Frame = 1
BLAST of Spo13247.1 vs. UniProtKB/TrEMBL
Match: F6HF14_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02980 PE=4 SV=1) HSP 1 Score: 380.2 bits (975), Expect = 3.500e-102 Identity = 253/449 (56.35%), Postives = 313/449 (69.71%), Query Frame = 1
BLAST of Spo13247.1 vs. UniProtKB/TrEMBL
Match: A0A059A010_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00868 PE=4 SV=1) HSP 1 Score: 371.3 bits (952), Expect = 1.600e-99 Identity = 250/453 (55.19%), Postives = 309/453 (68.21%), Query Frame = 1
BLAST of Spo13247.1 vs. UniProtKB/TrEMBL
Match: A0A059BFV8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02350 PE=4 SV=1) HSP 1 Score: 369.8 bits (948), Expect = 4.800e-99 Identity = 254/477 (53.25%), Postives = 313/477 (65.62%), Query Frame = 1
BLAST of Spo13247.1 vs. UniProtKB/TrEMBL
Match: I1NDJ9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G028100 PE=4 SV=1) HSP 1 Score: 357.8 bits (917), Expect = 1.900e-95 Identity = 247/449 (55.01%), Postives = 311/449 (69.27%), Query Frame = 1
BLAST of Spo13247.1 vs. TAIR (Arabidopsis)
Match: AT5G08550.1 (GC-rich sequence DNA-binding factor-like protein) HSP 1 Score: 257.3 bits (656), Expect = 1.700e-68 Identity = 203/456 (44.52%), Postives = 267/456 (58.55%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo13247.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo13247.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo13247.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0 Position : 0 Zoom : x 1
BLAST of Spo13247.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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