Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGCTGCTGCTGATGATGATACTACAACCTATGATGAGAGGTCTGAATACGTTGATCCTGATTGGACTGTTGTCCTACCTCGTCGGAAACGGAGAAAATGTCAGCCTAAAGTATCCCACCCAGAGCAAGATGTAAAAGAGCAGCAATTGGCCCCACCTGACCTGGAAGTCGATGAAGAGAGAGAGTCAAAATTAATGCAGAAAATCGAGACTAGCTTGAAGAAACTCGAGAGCTCCAAGTTTTTTGAACTTTTCTTGAATCAGATACAAGACCCTGAAGTGTTTAATTGTTTTTCTAGAGTTTTAGGGTCTGAACCAAGTATGAAGATGGTAGTATATGGTATAGGCAGCATCGAATCTTTTGAAGCCCCACGGTTACAGCTTAGTTTAGTGATGTTGATGAAGAGAAAGTTTGAATGGATAGGTGATGTCGAGGTATTTGACCCTGTTCTTTCTGGCACTGAAACACGGGTTCTGGAATCTCTTGGGTATTCTGTTATAACGGTGAATGAGGAAGGTAGAAGACAGGCATTAAAACCCACATTGTTCTTTATGCCTCACTGTGAGGCTTCGTTGTATCACAACCTTCTAGAGGTAAATTGGAATGCAGATATGTTGAGAAACTTGGCATTATTTGGAAACAGTTTTGAATCTTATGAACATCACAATGATGTAGTCAAGGACTACATAGCTTCTCCTTACACAAAGCGTATCTTGGCTGCTCGGACATTTGCAGAGGAGTTCAGAGTCAAAACAGGTCCAGATGATCATTGCAGAGCCTTTTATGAATCCAGTTGGCTTTTTTTCAACCCGAATCATGAGCAAGGATTACCCATTGTTTAG ATGGCTGCTGCTGCTGATGATGATACTACAACCTATGATGAGAGGTCTGAATACGTTGATCCTGATTGGACTGTTGTCCTACCTCGTCGGAAACGGAGAAAATGTCAGCCTAAAGTATCCCACCCAGAGCAAGATGTAAAAGAGCAGCAATTGGCCCCACCTGACCTGGAAGTCGATGAAGAGAGAGAGTCAAAATTAATGCAGAAAATCGAGACTAGCTTGAAGAAACTCGAGAGCTCCAAGTTTTTTGAACTTTTCTTGAATCAGATACAAGACCCTGAAGTGTTTAATTGTTTTTCTAGAGTTTTAGGGTCTGAACCAAGTATGAAGATGGTAGTATATGGTATAGGCAGCATCGAATCTTTTGAAGCCCCACGGTTACAGCTTAGTTTAGTGATGTTGATGAAGAGAAAGTTTGAATGGATAGGTGATGTCGAGGTATTTGACCCTGTTCTTTCTGGCACTGAAACACGGGTTCTGGAATCTCTTGGGTATTCTGTTATAACGGTGAATGAGGAAGGTAGAAGACAGGCATTAAAACCCACATTGTTCTTTATGCCTCACTGTGAGGCTTCGTTGTATCACAACCTTCTAGAGGTAAATTGGAATGCAGATATGTTGAGAAACTTGGCATTATTTGGAAACAGTTTTGAATCTTATGAACATCACAATGATGTAGTCAAGGACTACATAGCTTCTCCTTACACAAAGCGTATCTTGGCTGCTCGGACATTTGCAGAGGAGTTCAGAGTCAAAACAGGTCCAGATGATCATTGCAGAGCCTTTTATGAATCCAGTTGGCTTTTTTTCAACCCGAATCATGAGCAAGGATTACCCATTGTTTAG ATGGCTGCTGCTGCTGATGATGATACTACAACCTATGATGAGAGGTCTGAATACGTTGATCCTGATTGGACTGTTGTCCTACCTCGTCGGAAACGGAGAAAATGTCAGCCTAAAGTATCCCACCCAGAGCAAGATGTAAAAGAGCAGCAATTGGCCCCACCTGACCTGGAAGTCGATGAAGAGAGAGAGTCAAAATTAATGCAGAAAATCGAGACTAGCTTGAAGAAACTCGAGAGCTCCAAGTTTTTTGAACTTTTCTTGAATCAGATACAAGACCCTGAAGTGTTTAATTGTTTTTCTAGAGTTTTAGGGTCTGAACCAAGTATGAAGATGGTAGTATATGGTATAGGCAGCATCGAATCTTTTGAAGCCCCACGGTTACAGCTTAGTTTAGTGATGTTGATGAAGAGAAAGTTTGAATGGATAGGTGATGTCGAGGTATTTGACCCTGTTCTTTCTGGCACTGAAACACGGGTTCTGGAATCTCTTGGGTATTCTGTTATAACGGTGAATGAGGAAGGTAGAAGACAGGCATTAAAACCCACATTGTTCTTTATGCCTCACTGTGAGGCTTCGTTGTATCACAACCTTCTAGAGGTAAATTGGAATGCAGATATGTTGAGAAACTTGGCATTATTTGGAAACAGTTTTGAATCTTATGAACATCACAATGATGTAGTCAAGGACTACATAGCTTCTCCTTACACAAAGCGTATCTTGGCTGCTCGGACATTTGCAGAGGAGTTCAGAGTCAAAACAGGTCCAGATGATCATTGCAGAGCCTTTTATGAATCCAGTTGGCTTTTTTTCAACCCGAATCATGAGCAAGGATTACCCATTGTTTAG MAAAADDDTTTYDERSEYVDPDWTVVLPRRKRRKCQPKVSHPEQDVKEQQLAPPDLEVDEERESKLMQKIETSLKKLESSKFFELFLNQIQDPEVFNCFSRVLGSEPSMKMVVYGIGSIESFEAPRLQLSLVMLMKRKFEWIGDVEVFDPVLSGTETRVLESLGYSVITVNEEGRRQALKPTLFFMPHCEASLYHNLLEVNWNADMLRNLALFGNSFESYEHHNDVVKDYIASPYTKRILAARTFAEEFRVKTGPDDHCRAFYESSWLFFNPNHEQGLPIV Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo13295.1 vs. NCBI nr
Match: gi|902152553|gb|KNA05613.1| (hypothetical protein SOVF_188700 [Spinacia oleracea]) HSP 1 Score: 569.3 bits (1466), Expect = 3.700e-159 Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 1
BLAST of Spo13295.1 vs. NCBI nr
Match: gi|731319799|ref|XP_010670467.1| (PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 455.7 bits (1171), Expect = 5.900e-125 Identity = 225/277 (81.23%), Postives = 251/277 (90.61%), Query Frame = 1
BLAST of Spo13295.1 vs. NCBI nr
Match: gi|743913303|ref|XP_011000557.1| (PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Populus euphratica]) HSP 1 Score: 297.0 bits (759), Expect = 3.500e-77 Identity = 150/261 (57.47%), Postives = 195/261 (74.71%), Query Frame = 1
BLAST of Spo13295.1 vs. NCBI nr
Match: gi|566147549|ref|XP_002297744.2| (hypothetical protein POPTR_0001s06400g [Populus trichocarpa]) HSP 1 Score: 295.8 bits (756), Expect = 7.900e-77 Identity = 155/282 (54.96%), Postives = 203/282 (71.99%), Query Frame = 1
BLAST of Spo13295.1 vs. NCBI nr
Match: gi|1009175277|ref|XP_015868794.1| (PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Ziziphus jujuba]) HSP 1 Score: 293.5 bits (750), Expect = 3.900e-76 Identity = 152/274 (55.47%), Postives = 196/274 (71.53%), Query Frame = 1
BLAST of Spo13295.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QG29_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_188700 PE=4 SV=1) HSP 1 Score: 569.3 bits (1466), Expect = 2.600e-159 Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 1
BLAST of Spo13295.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CTM5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g041440 PE=4 SV=1) HSP 1 Score: 455.7 bits (1171), Expect = 4.100e-125 Identity = 225/277 (81.23%), Postives = 251/277 (90.61%), Query Frame = 1
BLAST of Spo13295.1 vs. UniProtKB/TrEMBL
Match: B9GM13_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s06400g PE=4 SV=2) HSP 1 Score: 295.8 bits (756), Expect = 5.500e-77 Identity = 155/282 (54.96%), Postives = 203/282 (71.99%), Query Frame = 1
BLAST of Spo13295.1 vs. UniProtKB/TrEMBL
Match: B9GWW7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s19760g PE=4 SV=2) HSP 1 Score: 291.6 bits (745), Expect = 1.000e-75 Identity = 143/260 (55.00%), Postives = 195/260 (75.00%), Query Frame = 1
BLAST of Spo13295.1 vs. UniProtKB/TrEMBL
Match: A0A061FS11_THECC (Sensitivity to red light reduced protein (SRR1), putative OS=Theobroma cacao GN=TCM_045259 PE=4 SV=1) HSP 1 Score: 289.3 bits (739), Expect = 5.100e-75 Identity = 150/269 (55.76%), Postives = 186/269 (69.14%), Query Frame = 1
BLAST of Spo13295.1 vs. ExPASy Swiss-Prot
Match: SRR1_ARATH (Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana GN=SRR1 PE=2 SV=2) HSP 1 Score: 272.7 bits (696), Expect = 4.500e-72 Identity = 142/266 (53.38%), Postives = 189/266 (71.05%), Query Frame = 1
BLAST of Spo13295.1 vs. ExPASy Swiss-Prot
Match: SRR1L_MOUSE (SRR1-like protein OS=Mus musculus GN=Srrd PE=2 SV=4) HSP 1 Score: 99.4 bits (246), Expect = 6.800e-20 Identity = 73/219 (33.33%), Postives = 112/219 (51.14%), Query Frame = 1
BLAST of Spo13295.1 vs. ExPASy Swiss-Prot
Match: SRR1L_HUMAN (SRR1-like protein OS=Homo sapiens GN=SRRD PE=2 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 7.000e-17 Identity = 53/142 (37.32%), Postives = 80/142 (56.34%), Query Frame = 1
BLAST of Spo13295.1 vs. ExPASy Swiss-Prot
Match: SRR1L_DROME (SRR1-like protein OS=Drosophila melanogaster GN=CG7988 PE=1 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 4.600e-8 Identity = 49/196 (25.00%), Postives = 93/196 (47.45%), Query Frame = 1
BLAST of Spo13295.1 vs. TAIR (Arabidopsis)
Match: AT5G59560.1 (sensitivity to red light reduced protein (SRR1)) HSP 1 Score: 272.7 bits (696), Expect = 2.500e-73 Identity = 142/266 (53.38%), Postives = 189/266 (71.05%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo13295.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo13295.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo13295.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 4
BLAST of Spo13295.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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