Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTCATGAACATCGCCCCTGGATACATATCTTGCCTCGCCGATCTGATCAACGCCTTTTACCAGCAGTTCGCCAGCTAGAGAAACATACGAGTGATCTTTATCGATTGGTCCAAGCTCCCACCGAATCGGTACGCAATTATTTAAACTGTTTCAATTGTGAAAAGATTAGTATAAAAAACGGTGATGTCAAGACAGCTATCGAAGCCTTCAAAAGAGGTCTCATCCCCAATTCGGAGTTGTACCGGGAGATCACCAAAATATCCATGTGCGACATTTGAAGAGGTCAGATCCAGAGCTAGTGCCCAAATGCGCCTGGAAGAGGATGATGCAACCCGGACGACGGCACCACGGCTAGCAGGGGCAGCAGCGATAGACGATGATTTTACTATTCTGTTATATGTATTTACTATTCCGTTATGATTTTCCCCCTCAAAAATATTTTCCATTTACTTTTACCTTTTTATTTGAGTGTGATAGGTTTTTCCAAATACATATCCGATATGTATTTGGACTTCCTCCTTCCAATGCATTAGCTAGCCGATGGCTAGCTAACCTTCATCGCATTTCAGTTAGTACTTTCATCACATTCTAGCTGACTTGTCAACTTTTACCTTTTTGTCAACTAATTTCGCCAAACGAAGCCTTGAAACACAATAATCTAAAATCGACGAACTCCTTGAAATTAATCTTTTGACTCAAATATCAATGCTTCAAAATTTTAGGTGAATTTTTTTTTCCAGTTGCCAGAACGATTATCATAAAGAAGTTCTAAATTCATTATTTTGGTATTATTCCGAAAAAGATACAGATAGCTGACTTATTTATCACATGATGTTTGATGTAGGCTAGCAAAACTTTCAGAAGGACAATTAGTTGATGGGAGGTTGGAATGTTTATACCATGGTTGGCAATTTTAAGGGGAAGGCAAATGTGTGAAGATACGTCAGGTCAATACTAGTACATCTTCTCTTAATCACCTTGAAATCCACTCTTTTCACTTTCCATTCTTGCTTAAAATGCATGATTCTAATGAAGTTCTTACATGAATCTAAACTAACAGCTACCAGCAGGAGCTAAAATTCCTAAACAAGCATGTGTGAAGACTTATGAAGTGAGAGATTCTCAAGGAGTTGTGTGGGTGTGGATGTCCCAAAGATTCCCGCCAAATGCCGAGAAACTCCCTTGGTTTGAAAACTTTGCTAGGCCAGGGTTTCAAGATATCTCAACTACACACGAGCTTCCATATGACCACTCCATTCTCCTCGAGAATCTCATGGACCCAGCCCACGTCCCAATATCCCATGATCGGACTGATTGGAGTGCAAAACGAGAAGACGCTCAAGCGTTGCTTTTTGAAGTCATAGAGAGAACAGACCGAGGTTTTGCTGGCTGGTGGGGAAAAGAAAGCGAGAAATCTATGTTAAATTTTCTGAGGTTTGAGGCACCATGTGTGCTCTCAAATAGTCGAGAGATAGTTGATGAAAAGGGAGAAAAAAACTACTTCAGCGGGCTCTTCCTTTGCAGGCCACCAGGGCAGGGGAAATCCATGCTAATTGTGAGGTTTGGAACCACTAAAAGATCGCCTCTTGCTAAATTCTTTCCCACGTGGTATTTCCACCAAAATGCTAGTAAGGTGTTTGAGCAAGACATGGGCTTCCTCTCATCCCAGAATGAGGTTTTGATCAGAGAGAAAGTCCCAACAAAGGAACTCTACCTGAATTTGAAGTCTTCTGACACTTGGGTTGCAGAATACAGGAAACGGATGGACAAAGTTGGGCATGGGATGCCTTATCATTTTGGGCATAGTATTATTTCACCCCCTGAAGTTCCAGCAGTTGTTGAGCATGCCCCAGCAGGTCTATTTGCTGGACTGTCGGCTCAATCTCCTGCTAAAGGTGGGCTTGGGACCATGTATGCTCCGAATTGGTCTAACCGGTATTTCCGACATGTGATCAATTGCAAGGAATGCAGTGGTGTCCTTAAAGCCTTTGAAACATGGAAAAAGGTCCTTTCTGTTATCGCTCTTTTATCCACTGGATTTGCCATACTTGTTTCAGGAAGGCAGTGGAAAGCTCTATGTTTAGTTACCACTTCATTGTGCTTGGCTGGAGTGTGTTTGTCAGACGATTGTGAAGGTTGCCTATATAAGGTCTACATGATATTTGATATGAAGAATGGGGATATTAGGTACAATGTGGTGCTCCTTGACATTCTTATTTGGCACAAATTGAAGGTTGTTACAATTTTCATGCCTAGATACAACTTACTCTTATTATTGTAAATGCGGTATTTATTCCTTGAGTTAGCAGTCCGTACCACACACTAATCGACCTGCAGCTGTTAGTCAGATAGGTGGTTTCAAAGATTGATGTGTTTTTTGTTTAGACCTACCATTGATATTAGACTATGAACTAGTAGATTTTTGAGATATTTAAACCAAATTTGTGTACTATGTGATGGAAAGGGAATGAGAGATTAGATATCATCTGTCTATATTATGCGGAATAAACCTAGGGATGTCAATGGGGCGGGGCGGATGTAGGTCCCTCCATCCCCATCCCCACCTAAAATTTTCATCTCTATCCCCGCCCCATCACCCATGGCGGGTACAAAATTTATCCCCATCCCCGCCCCAACGGGTATAAACTAAAATCCATCCCCGCCCCACCACCCAACTGGGTATCCATCCCCGTCTTATCCCCGCCTCATACCCGCGCCAGTACCCGCCAAAATTTTCTTATTTAGCAAACATTTTCCATGTATACGGAGTAATGAAAGTTAACATTCGAAAAAAAATACCGTATGACTAAAGTAACATATATAATCGGAAAAAAAATATGTCATAACAAAAAAAATCTCACCTAAATTCATATTATCACCTAAACATGCAAATAAATCCAAACTCAATCCATCACCCATGGCGGGTATGAAGCGGGGCGAGTGGGTATGGGGCGGGGTGGGCAGGGATTTTCACTTTTCTATTTTTATAAATTTCTGAAAATTNCCCGCCCCATCACCCGCCAAACCTACCTCCATCCCCGCCTACTTGGGGCGGATGCGGGTCGGGTCTCCTACGAAACCCGCCCCACTGACATCCCTAAATAAACCCTTTGATGCCAAGGGGGAGATGAAGCTGCGTTATTAAATTACTTCTGCAATCTGCATGTCATGATTCATGAAAACTTGATTCCAGGACACATCAAACAGTCCCTGTGAGGAGTCCATGGATTCAGAAATATGTTTTGGCAAAGGATGCTTGTTTGATTAACAACAGAATCATTGGGTGGCTGTTAGAAACCAGAGAGGATTCTTGA ATGGCTCATGAACATCGCCCCTGGATACATATCTTGCCTCGCCGATCTGATCAACGCCTTTTACCAGCAGTTCGCCAGCTAGAGAAACATACGAGTGATCTTTATCGATTGGTCCAAGCTCCCACCGAATCGCTACCAGCAGGAGCTAAAATTCCTAAACAAGCATGTGTGAAGACTTATGAAGTGAGAGATTCTCAAGGAGTTGTGTGGGTGTGGATGTCCCAAAGATTCCCGCCAAATGCCGAGAAACTCCCTTGGTTTGAAAACTTTGCTAGGCCAGGGTTTCAAGATATCTCAACTACACACGAGCTTCCATATGACCACTCCATTCTCCTCGAGAATCTCATGGACCCAGCCCACGTCCCAATATCCCATGATCGGACTGATTGGAGTGCAAAACGAGAAGACGCTCAAGCGTTGCTTTTTGAAGTCATAGAGAGAACAGACCGAGGTTTTGCTGGCTGGTGGGGAAAAGAAAGCGAGAAATCTATGTTAAATTTTCTGAGGTTTGAGGCACCATGTGTGCTCTCAAATAGTCGAGAGATAGTTGATGAAAAGGGAGAAAAAAACTACTTCAGCGGGCTCTTCCTTTGCAGGCCACCAGGGCAGGGGAAATCCATGCTAATTGTGAGGTTTGGAACCACTAAAAGATCGCCTCTTGCTAAATTCTTTCCCACGTGGTATTTCCACCAAAATGCTAGTAAGGTGTTTGAGCAAGACATGGGCTTCCTCTCATCCCAGAATGAGGTTTTGATCAGAGAGAAAGTCCCAACAAAGGAACTCTACCTGAATTTGAAGTCTTCTGACACTTGGGTTGCAGAATACAGGAAACGGATGGACAAAGTTGGGCATGGGATGCCTTATCATTTTGGGCATAGTATTATTTCACCCCCTGAAGTTCCAGCAGTTGTTGAGCATGCCCCAGCAGGTCTATTTGCTGGACTGTCGGCTCAATCTCCTGCTAAAGGTGGGCTTGGGACCATGTATGCTCCGAATTGGTCTAACCGGTATTTCCGACATGTGATCAATTGCAAGGAATGCAGTGGTGTCCTTAAAGCCTTTGAAACATGGAAAAAGGTCCTTTCTGTTATCGCTCTTTTATCCACTGGATTTGCCATACTTGTTTCAGGAAGGCAGTGGAAAGCTCTATGTTTAGTTACCACTTCATTGTGCTTGGCTGGAGTGTGTTTGTCAGACGATTGTGAAGGTTGCCTATATAAGGTCTACATGATATTTGATATGAAGAATGGGGATATTAGGACACATCAAACAGTCCCTGTGAGGAGTCCATGGATTCAGAAATATGTTTTGGCAAAGGATGCTTGTTTGATTAACAACAGAATCATTGGGTGGCTGTTAGAAACCAGAGAGGATTCTTGA ATGGCTCATGAACATCGCCCCTGGATACATATCTTGCCTCGCCGATCTGATCAACGCCTTTTACCAGCAGTTCGCCAGCTAGAGAAACATACGAGTGATCTTTATCGATTGGTCCAAGCTCCCACCGAATCGCTACCAGCAGGAGCTAAAATTCCTAAACAAGCATGTGTGAAGACTTATGAAGTGAGAGATTCTCAAGGAGTTGTGTGGGTGTGGATGTCCCAAAGATTCCCGCCAAATGCCGAGAAACTCCCTTGGTTTGAAAACTTTGCTAGGCCAGGGTTTCAAGATATCTCAACTACACACGAGCTTCCATATGACCACTCCATTCTCCTCGAGAATCTCATGGACCCAGCCCACGTCCCAATATCCCATGATCGGACTGATTGGAGTGCAAAACGAGAAGACGCTCAAGCGTTGCTTTTTGAAGTCATAGAGAGAACAGACCGAGGTTTTGCTGGCTGGTGGGGAAAAGAAAGCGAGAAATCTATGTTAAATTTTCTGAGGTTTGAGGCACCATGTGTGCTCTCAAATAGTCGAGAGATAGTTGATGAAAAGGGAGAAAAAAACTACTTCAGCGGGCTCTTCCTTTGCAGGCCACCAGGGCAGGGGAAATCCATGCTAATTGTGAGGTTTGGAACCACTAAAAGATCGCCTCTTGCTAAATTCTTTCCCACGTGGTATTTCCACCAAAATGCTAGTAAGGTGTTTGAGCAAGACATGGGCTTCCTCTCATCCCAGAATGAGGTTTTGATCAGAGAGAAAGTCCCAACAAAGGAACTCTACCTGAATTTGAAGTCTTCTGACACTTGGGTTGCAGAATACAGGAAACGGATGGACAAAGTTGGGCATGGGATGCCTTATCATTTTGGGCATAGTATTATTTCACCCCCTGAAGTTCCAGCAGTTGTTGAGCATGCCCCAGCAGGTCTATTTGCTGGACTGTCGGCTCAATCTCCTGCTAAAGGTGGGCTTGGGACCATGTATGCTCCGAATTGGTCTAACCGGTATTTCCGACATGTGATCAATTGCAAGGAATGCAGTGGTGTCCTTAAAGCCTTTGAAACATGGAAAAAGGTCCTTTCTGTTATCGCTCTTTTATCCACTGGATTTGCCATACTTGTTTCAGGAAGGCAGTGGAAAGCTCTATGTTTAGTTACCACTTCATTGTGCTTGGCTGGAGTGTGTTTGTCAGACGATTGTGAAGGTTGCCTATATAAGGTCTACATGATATTTGATATGAAGAATGGGGATATTAGGACACATCAAACAGTCCCTGTGAGGAGTCCATGGATTCAGAAATATGTTTTGGCAAAGGATGCTTGTTTGATTAACAACAGAATCATTGGGTGGCTGTTAGAAACCAGAGAGGATTCTTGA MAHEHRPWIHILPRRSDQRLLPAVRQLEKHTSDLYRLVQAPTESLPAGAKIPKQACVKTYEVRDSQGVVWVWMSQRFPPNAEKLPWFENFARPGFQDISTTHELPYDHSILLENLMDPAHVPISHDRTDWSAKREDAQALLFEVIERTDRGFAGWWGKESEKSMLNFLRFEAPCVLSNSREIVDEKGEKNYFSGLFLCRPPGQGKSMLIVRFGTTKRSPLAKFFPTWYFHQNASKVFEQDMGFLSSQNEVLIREKVPTKELYLNLKSSDTWVAEYRKRMDKVGHGMPYHFGHSIISPPEVPAVVEHAPAGLFAGLSAQSPAKGGLGTMYAPNWSNRYFRHVINCKECSGVLKAFETWKKVLSVIALLSTGFAILVSGRQWKALCLVTTSLCLAGVCLSDDCEGCLYKVYMIFDMKNGDIRTHQTVPVRSPWIQKYVLAKDACLINNRIIGWLLETREDS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo13334.1 vs. NCBI nr
Match: gi|902192376|gb|KNA12024.1| (hypothetical protein SOVF_129620 [Spinacia oleracea]) HSP 1 Score: 724.9 bits (1870), Expect = 8.600e-206 Identity = 345/351 (98.29%), Postives = 347/351 (98.86%), Query Frame = 1
BLAST of Spo13334.1 vs. NCBI nr
Match: gi|731362568|ref|XP_010692953.1| (PREDICTED: protein TIC 55, chloroplastic [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 677.2 bits (1746), Expect = 2.100e-191 Identity = 318/351 (90.60%), Postives = 336/351 (95.73%), Query Frame = 1
BLAST of Spo13334.1 vs. NCBI nr
Match: gi|1021054150|gb|KZN11928.1| (hypothetical protein DCAR_004584 [Daucus carota subsp. sativus]) HSP 1 Score: 621.3 bits (1601), Expect = 1.300e-174 Identity = 289/351 (82.34%), Postives = 318/351 (90.60%), Query Frame = 1
BLAST of Spo13334.1 vs. NCBI nr
Match: gi|75219721|sp|O49931.1|TIC55_PEA (RecName: Full=Protein TIC 55, chloroplastic; AltName: Full=Rieske iron-sulfur protein TIC55; AltName: Full=Translocon at the inner envelope membrane of chloroplasts 55; Short=PsTIC55; Flags: Precursor [Pisum sativum]) HSP 1 Score: 609.8 bits (1571), Expect = 4.000e-171 Identity = 286/351 (81.48%), Postives = 307/351 (87.46%), Query Frame = 1
BLAST of Spo13334.1 vs. NCBI nr
Match: gi|359475902|ref|XP_002283433.2| (PREDICTED: protein TIC 55, chloroplastic [Vitis vinifera]) HSP 1 Score: 608.2 bits (1567), Expect = 1.200e-170 Identity = 281/351 (80.06%), Postives = 313/351 (89.17%), Query Frame = 1
BLAST of Spo13334.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QXL7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_129620 PE=4 SV=1) HSP 1 Score: 724.9 bits (1870), Expect = 6.000e-206 Identity = 345/351 (98.29%), Postives = 347/351 (98.86%), Query Frame = 1
BLAST of Spo13334.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BH75_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g044830 PE=4 SV=1) HSP 1 Score: 677.2 bits (1746), Expect = 1.400e-191 Identity = 318/351 (90.60%), Postives = 336/351 (95.73%), Query Frame = 1
BLAST of Spo13334.1 vs. UniProtKB/TrEMBL
Match: A0A166J9C6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_004584 PE=4 SV=1) HSP 1 Score: 621.3 bits (1601), Expect = 9.300e-175 Identity = 289/351 (82.34%), Postives = 318/351 (90.60%), Query Frame = 1
BLAST of Spo13334.1 vs. UniProtKB/TrEMBL
Match: D7SV72_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g07020 PE=4 SV=1) HSP 1 Score: 608.2 bits (1567), Expect = 8.200e-171 Identity = 281/351 (80.06%), Postives = 313/351 (89.17%), Query Frame = 1
BLAST of Spo13334.1 vs. UniProtKB/TrEMBL
Match: B9RNS2_RICCO (Chlorophyll a oxygenase, putative OS=Ricinus communis GN=RCOM_0920350 PE=4 SV=1) HSP 1 Score: 607.4 bits (1565), Expect = 1.400e-170 Identity = 280/351 (79.77%), Postives = 311/351 (88.60%), Query Frame = 1
BLAST of Spo13334.1 vs. ExPASy Swiss-Prot
Match: TIC55_PEA (Protein TIC 55, chloroplastic OS=Pisum sativum GN=TIC55 PE=1 SV=1) HSP 1 Score: 609.8 bits (1571), Expect = 2.500e-173 Identity = 286/351 (81.48%), Postives = 307/351 (87.46%), Query Frame = 1
BLAST of Spo13334.1 vs. ExPASy Swiss-Prot
Match: TIC55_ARATH (Protein TIC 55, chloroplastic OS=Arabidopsis thaliana GN=TIC55 PE=1 SV=1) HSP 1 Score: 559.7 bits (1441), Expect = 3.000e-158 Identity = 271/380 (71.32%), Postives = 304/380 (80.00%), Query Frame = 1
BLAST of Spo13334.1 vs. ExPASy Swiss-Prot
Match: PTC52_ARATH (Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana GN=PTC52 PE=2 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 6.300e-15 Identity = 78/307 (25.41%), Postives = 118/307 (38.44%), Query Frame = 1
BLAST of Spo13334.1 vs. TAIR (Arabidopsis)
Match: AT2G24820.1 (translocon at the inner envelope membrane of chloroplasts 55-II) HSP 1 Score: 559.7 bits (1441), Expect = 1.700e-159 Identity = 271/380 (71.32%), Postives = 304/380 (80.00%), Query Frame = 1
BLAST of Spo13334.1 vs. TAIR (Arabidopsis)
Match: AT4G25650.2 (ACD1-like) HSP 1 Score: 83.6 bits (205), Expect = 3.500e-16 Identity = 78/307 (25.41%), Postives = 118/307 (38.44%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo13334.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo13334.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo13334.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 3
BLAST of Spo13334.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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