Spo13378 (gene)

Overview
NameSpo13378
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionHistone superfamily protein
Locationchr4 : 33025047 .. 33025457 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACGAACCAAGCAAACTGCCAGGAAATCCACTGGAGGAAAAGCTCCAAGGAAGCAGCTCGCCACCAAGGCTGCCCGTAAGTCTGCCCCAGCTACCGGAGGAGTCAAGAAGCCCCACCGTTTCAGGCCAGGAACCGTGGCTCTTCGTGAAATCAGGAAGTACCAGAAGAGCACCGAGCTTCTCATCAGGAAGCTTCCATTCCAGAGGCTTGTCCGAGAAATCGCTCAGGATTTCAAAACTGATCTCCGTTTCCAAAGCTCCGCCGTCGCCGCTCTTCAGGAAGCCGCCGAAGCTTACCTTGTTGGTCTCTTTGAGGATACTAACCTCTGCGCAATTCACGCTAAGAGAGTGACCATTATGCCTAAGGATATTCAGCTTGCTAGGAGGATCCGTGGTGAGAGGGCTTAA

mRNA sequence

ATGGCACGAACCAAGCAAACTGCCAGGAAATCCACTGGAGGAAAAGCTCCAAGGAAGCAGCTCGCCACCAAGGCTGCCCGTAAGTCTGCCCCAGCTACCGGAGGAGTCAAGAAGCCCCACCGTTTCAGGCCAGGAACCGTGGCTCTTCGTGAAATCAGGAAGTACCAGAAGAGCACCGAGCTTCTCATCAGGAAGCTTCCATTCCAGAGGCTTGTCCGAGAAATCGCTCAGGATTTCAAAACTGATCTCCGTTTCCAAAGCTCCGCCGTCGCCGCTCTTCAGGAAGCCGCCGAAGCTTACCTTGTTGGTCTCTTTGAGGATACTAACCTCTGCGCAATTCACGCTAAGAGAGTGACCATTATGCCTAAGGATATTCAGCTTGCTAGGAGGATCCGTGGTGAGAGGGCTTAA

Coding sequence (CDS)

ATGGCACGAACCAAGCAAACTGCCAGGAAATCCACTGGAGGAAAAGCTCCAAGGAAGCAGCTCGCCACCAAGGCTGCCCGTAAGTCTGCCCCAGCTACCGGAGGAGTCAAGAAGCCCCACCGTTTCAGGCCAGGAACCGTGGCTCTTCGTGAAATCAGGAAGTACCAGAAGAGCACCGAGCTTCTCATCAGGAAGCTTCCATTCCAGAGGCTTGTCCGAGAAATCGCTCAGGATTTCAAAACTGATCTCCGTTTCCAAAGCTCCGCCGTCGCCGCTCTTCAGGAAGCCGCCGAAGCTTACCTTGTTGGTCTCTTTGAGGATACTAACCTCTGCGCAATTCACGCTAAGAGAGTGACCATTATGCCTAAGGATATTCAGCTTGCTAGGAGGATCCGTGGTGAGAGGGCTTAA

Protein sequence

MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo13378.1Spo13378.1mRNA


Homology
[Close]
BLAST of Spo13378.1 vs. NCBI nr
Match: gi|992271660|gb|KXG31833.1| (hypothetical protein SORBI_003G065000, partial [Sorghum bicolor])

HSP 1 Score: 253.4 bits (646), Expect = 2.200e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

		  

Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 87  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 146

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 147 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 206

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 207 MPKDIQLARRIRGERA 222
[Close]
BLAST of Spo13378.1 vs. NCBI nr
Match: gi|643697049|gb|KDP20192.1| (hypothetical protein JCGZ_07912 [Jatropha curcas])

HSP 1 Score: 253.4 bits (646), Expect = 2.200e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

		  

Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 91  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 150

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 151 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 210

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 211 MPKDIQLARRIRGERA 226
[Close]
BLAST of Spo13378.1 vs. NCBI nr
Match: gi|414878180|tpg|DAA55311.1| (TPA: histone H3.2 [Zea mays])

HSP 1 Score: 253.4 bits (646), Expect = 2.200e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

		  

Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 110 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 169

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 170 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 229

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 230 MPKDIQLARRIRGERA 245
[Close]
BLAST of Spo13378.1 vs. NCBI nr
Match: gi|944232983|gb|KQK97345.1| (hypothetical protein SETIT_012204mg, partial [Setaria italica])

HSP 1 Score: 253.4 bits (646), Expect = 2.200e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

		  

Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 123 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 182

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 183 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 242

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 243 MPKDIQLARRIRGERA 258
[Close]
BLAST of Spo13378.1 vs. NCBI nr
Match: gi|922560415|ref|XP_013608483.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC106315288 [Brassica oleracea var. oleracea])

HSP 1 Score: 253.4 bits (646), Expect = 2.200e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

		  

Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
[Close]
BLAST of Spo13378.1 vs. UniProtKB/TrEMBL
Match: Q71CZ4_OROCE (Histone H3 OS=Orobanche cernua var. cumana PE=2 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.500e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

		  

Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
[Close]
BLAST of Spo13378.1 vs. UniProtKB/TrEMBL
Match: K3YE80_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_012541mg PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.500e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

		  

Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 52  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 111

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 112 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 171

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 172 MPKDIQLARRIRGERA 187
[Close]
BLAST of Spo13378.1 vs. UniProtKB/TrEMBL
Match: A0A096TZU4_MAIZE (Histone H3.2 OS=Zea mays GN=H3C4 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.500e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

		  

Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 110 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 169

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 170 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 229

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 230 MPKDIQLARRIRGERA 245
[Close]
BLAST of Spo13378.1 vs. UniProtKB/TrEMBL
Match: K3ZAN5_SETIT (Histone H3 OS=Setaria italica GN=SETIT_007481mg PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.500e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

		  

Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
[Close]
BLAST of Spo13378.1 vs. UniProtKB/TrEMBL
Match: M5WKJ0_PRUPE (Histone H3 OS=Prunus persica GN=PRUPE_ppa013165mg PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.500e-64
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

		  

Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
[Close]
BLAST of Spo13378.1 vs. ExPASy Swiss-Prot
Match: H32_ARATH (Histone H3.2 OS=Arabidopsis thaliana GN=HTR2 PE=1 SV=2)

HSP 1 Score: 253.4 bits (646), Expect = 1.400e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

		  

Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
[Close]
BLAST of Spo13378.1 vs. ExPASy Swiss-Prot
Match: H32_ASPOF (Histone H3.2 OS=Asparagus officinalis PE=2 SV=3)

HSP 1 Score: 253.4 bits (646), Expect = 1.400e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

		  

Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
[Close]
BLAST of Spo13378.1 vs. ExPASy Swiss-Prot
Match: H32_BRANA (Histone H3.2 OS=Brassica napus PE=2 SV=3)

HSP 1 Score: 253.4 bits (646), Expect = 1.400e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

		  

Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
[Close]
BLAST of Spo13378.1 vs. ExPASy Swiss-Prot
Match: H32_EUPES (Histone H3.2 OS=Euphorbia esula GN=H3 PE=2 SV=3)

HSP 1 Score: 253.4 bits (646), Expect = 1.400e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

		  

Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
[Close]
BLAST of Spo13378.1 vs. ExPASy Swiss-Prot
Match: H32_PETCR (Histone H3.2 OS=Petroselinum crispum GN=H3-7 PE=3 SV=2)

HSP 1 Score: 253.4 bits (646), Expect = 1.400e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

		  

Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
[Close]
BLAST of Spo13378.1 vs. TAIR (Arabidopsis)
Match: AT1G09200.1 (Histone superfamily protein)

HSP 1 Score: 253.4 bits (646), Expect = 7.700e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

		  

Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
[Close]
BLAST of Spo13378.1 vs. TAIR (Arabidopsis)
Match: AT3G27360.1 (Histone superfamily protein)

HSP 1 Score: 253.4 bits (646), Expect = 7.700e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

		  

Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
[Close]
BLAST of Spo13378.1 vs. TAIR (Arabidopsis)
Match: AT5G10390.1 (Histone superfamily protein)

HSP 1 Score: 253.4 bits (646), Expect = 7.700e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

		  

Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
[Close]
BLAST of Spo13378.1 vs. TAIR (Arabidopsis)
Match: AT5G10400.1 (Histone superfamily protein)

HSP 1 Score: 253.4 bits (646), Expect = 7.700e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

		  

Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
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BLAST of Spo13378.1 vs. TAIR (Arabidopsis)
Match: AT5G65360.1 (Histone superfamily protein)

HSP 1 Score: 253.4 bits (646), Expect = 7.700e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

		  

Query: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
           LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPKDIQLARRIRGERA 137
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of Spo13378.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|992271660|gb|KXG31833.1|2.2e-64100.hypothetical protein SORBI_003... [more]
gi|643697049|gb|KDP20192.1|2.2e-64100.hypothetical protein JCGZ_0791... [more]
gi|414878180|tpg|DAA55311.1|2.2e-64100.TPA: histone H3.2 [Zea mays][more]
gi|944232983|gb|KQK97345.1|2.2e-64100.hypothetical protein SETIT_012... [more]
gi|922560415|ref|XP_013608483.1|2.2e-64100.PREDICTED: LOW QUALITY PROTEIN... [more]
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BLAST of Spo13378.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
Q71CZ4_OROCE1.5e-64100.Histone H3 OS=Orobanche cernua... [more]
K3YE80_SETIT1.5e-64100.Uncharacterized protein OS=Set... [more]
A0A096TZU4_MAIZE1.5e-64100.Histone H3.2 OS=Zea mays GN=H3... [more]
K3ZAN5_SETIT1.5e-64100.Histone H3 OS=Setaria italica ... [more]
M5WKJ0_PRUPE1.5e-64100.Histone H3 OS=Prunus persica G... [more]
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BLAST of Spo13378.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
H32_ARATH1.4e-66100.Histone H3.2 OS=Arabidopsis th... [more]
H32_ASPOF1.4e-66100.Histone H3.2 OS=Asparagus offi... [more]
H32_BRANA1.4e-66100.Histone H3.2 OS=Brassica napus... [more]
H32_EUPES1.4e-66100.Histone H3.2 OS=Euphorbia esul... [more]
H32_PETCR1.4e-66100.Histone H3.2 OS=Petroselinum c... [more]
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BLAST of Spo13378.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT1G09200.17.7e-68100.Histone superfamily protein[more]
AT3G27360.17.7e-68100.Histone superfamily protein[more]
AT5G10390.17.7e-68100.Histone superfamily protein[more]
AT5G10400.17.7e-68100.Histone superfamily protein[more]
AT5G65360.17.7e-68100.Histone superfamily protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000164Histone H3/CENP-APRINTSPR00622HISTONEH3coord: 114..135
score: 1.3E-85coord: 98..114
score: 1.3E-85coord: 34..55
score: 1.3E-85coord: 80..98
score: 1.3E-85coord: 3..17
score: 1.3E-85coord: 17..31
score: 1.3E-85coord: 58..75
score: 1.3
IPR000164Histone H3/CENP-APANTHERPTHR11426HISTONE H3coord: 1..136
score: 1.2E
IPR000164Histone H3/CENP-ASMARTSM00428h35coord: 34..136
score: 8.4
IPR000164Histone H3/CENP-APROSITEPS00322HISTONE_H3_1coord: 15..21
scor
IPR000164Histone H3/CENP-APROSITEPS00959HISTONE_H3_2coord: 67..75
scor
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 1..132
score: 8.0
IPR009072Histone-foldGENE3D1.10.20.10coord: 2..134
score: 5.5
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 2..133
score: 1.14

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008283 cell proliferation
biological_process GO:0051567 histone H3-K9 methylation
biological_process GO:0006886 intracellular protein transport
biological_process GO:0009987 cellular process
biological_process GO:0006306 DNA methylation
biological_process GO:0006270 DNA replication initiation
biological_process GO:0006268 DNA unwinding involved in DNA replication
biological_process GO:0016458 gene silencing
biological_process GO:0006412 translation
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0051726 regulation of cell cycle
biological_process GO:0006275 regulation of DNA replication
biological_process GO:0009909 regulation of flower development
biological_process GO:0006334 nucleosome assembly
cellular_component GO:0042555 MCM complex
cellular_component GO:0005657 replication fork
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005744 mitochondrial inner membrane presequence translocase complex
cellular_component GO:0044425 membrane part
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005730 nucleolus
cellular_component GO:0005840 ribosome
cellular_component GO:0009536 plastid
cellular_component GO:0005634 nucleus
cellular_component GO:0000786 nucleosome
molecular_function GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity
molecular_function GO:0005515 protein binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0003678 DNA helicase activity
RNA-Seq Expression