Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTGCGTACATTGTCAGCTCTAAGGCAACACATTATAACAAAAAGGAAGAGCCCTAAGGTTGCAGATGAGACCATGTTTAGCAACATGAATGCTGATGGTGCCGGCATGCCATTGCCTGTATACGCTAATGACATGAACCGAACCGCTCGGTCACACCACACTCGAAACGGGCTGGCTGTGATTTCGACTATTGTTCGTATACCGTTTTCCATCCTTTCTTGCTTCTCCCAACACCATGGCAACGCCGCTGATGCCATGTGGGTCACCGGAGAAACCTTTCGGACTTCTTCGGAGATTGATCATCTTATGATCAGTGACAGTATGCGTTATGCAATTTTGATGTAG ATGTTGCGTACATTGTCAGCTCTAAGGCAACACATTATAACAAAAAGGAAGAGCCCTAAGGTTGCAGATGAGACCATGTTTAGCAACATGAATGCTGATGGTGCCGGCATGCCATTGCCTGTATACGCTAATGACATGAACCGAACCGCTCGGTCACACCACACTCGAAACGGGCTGGCTGTGATTTCGACTATTGTTCGTATACCGTTTTCCATCCTTTCTTGCTTCTCCCAACACCATGGCAACGCCGCTGATGCCATGTGGGTCACCGGAGAAACCTTTCGGACTTCTTCGGAGATTGATCATCTTATGATCAGTGACAGTATGCGTTATGCAATTTTGATGTAG ATGTTGCGTACATTGTCAGCTCTAAGGCAACACATTATAACAAAAAGGAAGAGCCCTAAGGTTGCAGATGAGACCATGTTTAGCAACATGAATGCTGATGGTGCCGGCATGCCATTGCCTGTATACGCTAATGACATGAACCGAACCGCTCGGTCACACCACACTCGAAACGGGCTGGCTGTGATTTCGACTATTGTTCGTATACCGTTTTCCATCCTTTCTTGCTTCTCCCAACACCATGGCAACGCCGCTGATGCCATGTGGGTCACCGGAGAAACCTTTCGGACTTCTTCGGAGATTGATCATCTTATGATCAGTGACAGTATGCGTTATGCAATTTTGATGTAG MLRTLSALRQHIITKRKSPKVADETMFSNMNADGAGMPLPVYANDMNRTARSHHTRNGLAVISTIVRIPFSILSCFSQHHGNAADAMWVTGETFRTSSEIDHLMISDSMRYAILM Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo13407.1 vs. NCBI nr
Match: gi|902194699|gb|KNA12629.1| (hypothetical protein SOVF_124300 [Spinacia oleracea]) HSP 1 Score: 230.3 bits (586), Expect = 1.700e-57 Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 1
BLAST of Spo13407.1 vs. NCBI nr
Match: gi|731371509|ref|XP_010666063.1| (PREDICTED: uncharacterized protein LOC104883274 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 173.3 bits (438), Expect = 2.400e-40 Identity = 84/115 (73.04%), Postives = 98/115 (85.22%), Query Frame = 1
BLAST of Spo13407.1 vs. NCBI nr
Match: gi|731327824|ref|XP_010674723.1| (PREDICTED: uncharacterized protein LOC104890820 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 132.1 bits (331), Expect = 6.200e-28 Identity = 71/115 (61.74%), Postives = 81/115 (70.43%), Query Frame = 1
BLAST of Spo13407.1 vs. NCBI nr
Match: gi|902220943|gb|KNA18737.1| (hypothetical protein SOVF_068060 [Spinacia oleracea]) HSP 1 Score: 122.1 bits (305), Expect = 6.400e-25 Identity = 71/115 (61.74%), Postives = 79/115 (68.70%), Query Frame = 1
BLAST of Spo13407.1 vs. NCBI nr
Match: gi|952025440|gb|ALN97013.1| (hypothetical protein [Populus tomentosa]) HSP 1 Score: 107.1 bits (266), Expect = 2.100e-20 Identity = 62/116 (53.45%), Postives = 76/116 (65.52%), Query Frame = 1
BLAST of Spo13407.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QZF0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_124300 PE=4 SV=1) HSP 1 Score: 230.3 bits (586), Expect = 1.200e-57 Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 1
BLAST of Spo13407.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B5V9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g225670 PE=4 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 1.700e-40 Identity = 84/115 (73.04%), Postives = 98/115 (85.22%), Query Frame = 1
BLAST of Spo13407.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CJL5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g081210 PE=4 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 4.300e-28 Identity = 71/115 (61.74%), Postives = 81/115 (70.43%), Query Frame = 1
BLAST of Spo13407.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RIQ8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_068060 PE=4 SV=1) HSP 1 Score: 122.1 bits (305), Expect = 4.400e-25 Identity = 71/115 (61.74%), Postives = 79/115 (68.70%), Query Frame = 1
BLAST of Spo13407.1 vs. UniProtKB/TrEMBL
Match: A0A0S2GL29_POPTO (Uncharacterized protein OS=Populus tomentosa PE=2 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 1.500e-20 Identity = 62/116 (53.45%), Postives = 76/116 (65.52%), Query Frame = 1
BLAST of Spo13407.1 vs. TAIR (Arabidopsis)
Match: AT5G35732.1 (unknown protein) HSP 1 Score: 77.8 bits (190), Expect = 4.900e-15 Identity = 50/115 (43.48%), Postives = 71/115 (61.74%), Query Frame = 1
BLAST of Spo13407.1 vs. TAIR (Arabidopsis)
Match: AT2G04795.1 (unknown protein) HSP 1 Score: 71.2 bits (173), Expect = 4.600e-13 Identity = 44/115 (38.26%), Postives = 63/115 (54.78%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo13407.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo13407.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo13407.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo13407.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|