Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCATTTCCCGCCATTTCACCCCACTCCTTTCTTCCTCATAAATAGAGCTCGCACTACAGAGACAGGGTTCCCAGTCTTCCTACCACTTCCCTACTTCCCCACAATTTGCTCTCCTTCTCTCTCTTCACTCCCTCAAGAACAACTCAGAAACAATGTTTGAATTAAGGCTGGTACAGGGGAGCTTATTGAAAAGGGTGATTGACGCCATTAAAGATCTTGTCAATGACGCCAATTTTGATTGCTCTTCCACCGGATTCTCTCTGCAAGCCATGGATTCCAGTCATGTTGCTCTTGTCGCCCTCCTCCTGCGGTCCGAGGGGTTCGAGCATTTCCGATGTGACCGGACCTTCTCCATGGGTATGAGCATTGCTAACATGGCTAAGATGCTTAAATGCGCCTCTAATGATGATATTATTACCATCAAGGCTGATGACGGCACCGACACTGTCACTTTCATGTTCGAGAGCCCCTGTAAGTATTTCCTTTATATTACATTTTTGGTTTAATTGTTTCTGTTTTGGCTTAAATAGAATAGGGTTTTAGAAATGGGAAATTGATTTAGGGTTTTGGGCAATGGGAAATTGATTTAGGGTTTTGTAAAATGGGAATTTAATTTAGGGTTTTGTGAATGTGAAATTGATTTAGGGTTTTGTGAATGTGAAATTGATTTAGGGTTTTGGTGGGTTGTGTTTTGGCATTTGGAATCAGGATATCTTGCAGTAATGTTTGTCAATTAATTATGCCAGAATAGGGTTTTGCATTCATCATTTGGAGTTGGCCAATGTGGAATGTTTTTTGTCTATCTGATTGATTTAGATTCTATGATGCAAAGAGAGTGATACATTAAATTGGTTGTTTGTTAGATTTCACGTTATAAACATGGAGTGAATATTGGATTCAAGTTTTCTGCTTTGGTAGTTAGTAGTCACATAACCACCTGATGATCTTCTGTTGGAAGTTTATTGCTTTTGGGGGTTAATCATCTCTGATTTTGTTTGCTTAGTCCAAACAGTTGCAATTCCAGTTATTCCTTGTTCAATCAATTCATTGTTCAAAATAGTTACAGAGCACTTAATGTTGGAATGGGTTCCAGTTGTTTGTATCTTAATCTATGTCTGCATTTGGTTGCTTGTTTGTCATTGTGTTACCTTAACAATATGATACTTTATACGAAGTGTACTCCTTATGCATGCGATTCAAGTAGAATGTGTGATGAACATTTGCTGGCAATGTGATGAATGTTCAAGTTTTATATCTATGTACAGTGGTCCTCTTTGAGCTTTTGATGAATAGGACTATTCTATGACTTTCTGCGATATACATTAAAGTAGTATGCTTTCTTACTCATTGCTGCTGCCTGTCTAATGTGCAGCACAAGATAAGATATCAGATATTGAGATGAAACTGATGGACATTGACAGTGATCACCTTGGGATCCCAGATGCCGAATATGAAGCAATTGTTCGAATGCCATCAACAGAGTTTGGTAGCATATGTACAAGTCTTTCCACCATCGGTGATACTGGTAAGATGGGCTAATTGCTTATGTATATAACTAATGGTGTTTCCACTCACTACCATTCTTCTAAAAAGAGGAAGATAAGCTAACTTGATCCACTTATTGGTGCAGTTACTATTGCTGTGTCAAAGCAAGGTGTGACTTTTTCCACCAAAGGTGACATTGGATCTGGGAACATTACCTGCAGACAGAATTCATCAACAGAGAAGGTTTGTTCTTTCTCACTGCATCTACAAAAGTTACTCCAATTTGCAGAAATTACAATGTTTTGGATGATTATAGCAGTCTTGCTTATGAGAACTCATAATTTTGTTTTATTTTTGGTAATGTGGCAGCCAGAGGAGGCCACTATTATTGAGATGAAGGAACCAGTTGTTTTGACATTTGCTCTCAAGTATATCACTACATTCACCAAAGCAACATCTTTGTCCAGCCAAGTGACTATTAGCTTATCCTCGGATATGCCTGTGGTTGTGGAATACAAGATTGCTGAAATGGGCCACATCAGGTACTACCTGGCTCCCAAGATTGAAGAAGAGGATCTAGAGACCAACCTTCAGCCTGAAACCAGGCCTAGAACTGAGGCCCGAGAAGAAAATCATGCTAAACCCGAGGTCCATCAGGAGGCTCAAGAAGTTGTGCCTCTTGCTATAACGGGCACCAAGGAAGAAAATGGCACTGAAGATGAAATTGTTGAGGATTCCCAGGTTAAGATGGAAACTGAAAATGGAGCTGATGTGAAGCTTAAAGTGGAGAAAAAGCCATTGAAATCGGAATTAGCTATGGAGAAAGACTTTAAGATGGAAACTGATTCTGAAGCTGAGACAAAGCCTACGACAGAGGCAACACAACCAAAGTCAGAAGTTGAGGTTATGGAAGTAGAGGACTCTACTTGAGCAAACAATCACTGAAACATAACATGTTCATACTAGTGTTAGAGATTTGGGCAGTGTTTTATCTAGTCGGCTAGGTTTCCATGACCATTTTGGCATTTGATTTGATTATTTTTGGTCTGAAACCATTTTGATGTAAATCGGGTAGTTGGGTAATAGTAATTTAGGGCTTTCTTTCAAGAGTAACCTTCACTTTTGTAGTTGCTCAATGCAATGAACAAACAAGGAATTGGTGCAGAAGGGTGTTCTGGAT CCATTTCCCGCCATTTCACCCCACTCCTTTCTTCCTCATAAATAGAGCTCGCACTACAGAGACAGGGTTCCCAGTCTTCCTACCACTTCCCTACTTCCCCACAATTTGCTCTCCTTCTCTCTCTTCACTCCCTCAAGAACAACTCAGAAACAATGTTTGAATTAAGGCTGGTACAGGGGAGCTTATTGAAAAGGGTGATTGACGCCATTAAAGATCTTGTCAATGACGCCAATTTTGATTGCTCTTCCACCGGATTCTCTCTGCAAGCCATGGATTCCAGTCATGTTGCTCTTGTCGCCCTCCTCCTGCGGTCCGAGGGGTTCGAGCATTTCCGATGTGACCGGACCTTCTCCATGGGTATGAGCATTGCTAACATGGCTAAGATGCTTAAATGCGCCTCTAATGATGATATTATTACCATCAAGGCTGATGACGGCACCGACACTGTCACTTTCATGTTCGAGAGCCCCTCACAAGATAAGATATCAGATATTGAGATGAAACTGATGGACATTGACAGTGATCACCTTGGGATCCCAGATGCCGAATATGAAGCAATTGTTCGAATGCCATCAACAGAGTTTGGTAGCATATGTACAAGTCTTTCCACCATCGGTGATACTGTTACTATTGCTGTGTCAAAGCAAGGTGTGACTTTTTCCACCAAAGGTGACATTGGATCTGGGAACATTACCTGCAGACAGAATTCATCAACAGAGAAGCCAGAGGAGGCCACTATTATTGAGATGAAGGAACCAGTTGTTTTGACATTTGCTCTCAAGTATATCACTACATTCACCAAAGCAACATCTTTGTCCAGCCAAGTGACTATTAGCTTATCCTCGGATATGCCTGTGGTTGTGGAATACAAGATTGCTGAAATGGGCCACATCAGGTACTACCTGGCTCCCAAGATTGAAGAAGAGGATCTAGAGACCAACCTTCAGCCTGAAACCAGGCCTAGAACTGAGGCCCGAGAAGAAAATCATGCTAAACCCGAGGTCCATCAGGAGGCTCAAGAAGTTGTGCCTCTTGCTATAACGGGCACCAAGGAAGAAAATGGCACTGAAGATGAAATTGTTGAGGATTCCCAGGTTAAGATGGAAACTGAAAATGGAGCTGATGTGAAGCTTAAAGTGGAGAAAAAGCCATTGAAATCGGAATTAGCTATGGAGAAAGACTTTAAGATGGAAACTGATTCTGAAGCTGAGACAAAGCCTACGACAGAGGCAACACAACCAAAGTCAGAAGTTGAGGTTATGGAAGTAGAGGACTCTACTTGAGCAAACAATCACTGAAACATAACATGTTCATACTAGTGTTAGAGATTTGGGCAGTGTTTTATCTAGTCGGCTAGGTTTCCATGACCATTTTGGCATTTGATTTGATTATTTTTGGTCTGAAACCATTTTGATGTAAATCGGGTAGTTGGGTAATAGTAATTTAGGGCTTTCTTTCAAGAGTAACCTTCACTTTTGTAGTTGCTCAATGCAATGAACAAACAAGGAATTGGTGCAGAAGGGTGTTCTGGAT ATGTTTGAATTAAGGCTGGTACAGGGGAGCTTATTGAAAAGGGTGATTGACGCCATTAAAGATCTTGTCAATGACGCCAATTTTGATTGCTCTTCCACCGGATTCTCTCTGCAAGCCATGGATTCCAGTCATGTTGCTCTTGTCGCCCTCCTCCTGCGGTCCGAGGGGTTCGAGCATTTCCGATGTGACCGGACCTTCTCCATGGGTATGAGCATTGCTAACATGGCTAAGATGCTTAAATGCGCCTCTAATGATGATATTATTACCATCAAGGCTGATGACGGCACCGACACTGTCACTTTCATGTTCGAGAGCCCCTCACAAGATAAGATATCAGATATTGAGATGAAACTGATGGACATTGACAGTGATCACCTTGGGATCCCAGATGCCGAATATGAAGCAATTGTTCGAATGCCATCAACAGAGTTTGGTAGCATATGTACAAGTCTTTCCACCATCGGTGATACTGTTACTATTGCTGTGTCAAAGCAAGGTGTGACTTTTTCCACCAAAGGTGACATTGGATCTGGGAACATTACCTGCAGACAGAATTCATCAACAGAGAAGCCAGAGGAGGCCACTATTATTGAGATGAAGGAACCAGTTGTTTTGACATTTGCTCTCAAGTATATCACTACATTCACCAAAGCAACATCTTTGTCCAGCCAAGTGACTATTAGCTTATCCTCGGATATGCCTGTGGTTGTGGAATACAAGATTGCTGAAATGGGCCACATCAGGTACTACCTGGCTCCCAAGATTGAAGAAGAGGATCTAGAGACCAACCTTCAGCCTGAAACCAGGCCTAGAACTGAGGCCCGAGAAGAAAATCATGCTAAACCCGAGGTCCATCAGGAGGCTCAAGAAGTTGTGCCTCTTGCTATAACGGGCACCAAGGAAGAAAATGGCACTGAAGATGAAATTGTTGAGGATTCCCAGGTTAAGATGGAAACTGAAAATGGAGCTGATGTGAAGCTTAAAGTGGAGAAAAAGCCATTGAAATCGGAATTAGCTATGGAGAAAGACTTTAAGATGGAAACTGATTCTGAAGCTGAGACAAAGCCTACGACAGAGGCAACACAACCAAAGTCAGAAGTTGAGGTTATGGAAGTAGAGGACTCTACTTGA MFELRLVQGSLLKRVIDAIKDLVNDANFDCSSTGFSLQAMDSSHVALVALLLRSEGFEHFRCDRTFSMGMSIANMAKMLKCASNDDIITIKADDGTDTVTFMFESPSQDKISDIEMKLMDIDSDHLGIPDAEYEAIVRMPSTEFGSICTSLSTIGDTVTIAVSKQGVTFSTKGDIGSGNITCRQNSSTEKPEEATIIEMKEPVVLTFALKYITTFTKATSLSSQVTISLSSDMPVVVEYKIAEMGHIRYYLAPKIEEEDLETNLQPETRPRTEAREENHAKPEVHQEAQEVVPLAITGTKEENGTEDEIVEDSQVKMETENGADVKLKVEKKPLKSELAMEKDFKMETDSEAETKPTTEATQPKSEVEVMEVEDST Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo13439.1 vs. NCBI nr
Match: gi|902157301|gb|KNA06110.1| (hypothetical protein SOVF_184080 [Spinacia oleracea]) HSP 1 Score: 703.7 bits (1815), Expect = 1.700e-199 Identity = 376/376 (100.00%), Postives = 376/376 (100.00%), Query Frame = 1
BLAST of Spo13439.1 vs. NCBI nr
Match: gi|731315190|ref|XP_010690277.1| (PREDICTED: proliferating cell nuclear antigen-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 612.5 bits (1578), Expect = 5.100e-172 Identity = 332/386 (86.01%), Postives = 353/386 (91.45%), Query Frame = 1
BLAST of Spo13439.1 vs. NCBI nr
Match: gi|661882490|emb|CDP14070.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 429.5 bits (1103), Expect = 6.100e-117 Identity = 238/373 (63.81%), Postives = 286/373 (76.68%), Query Frame = 1
BLAST of Spo13439.1 vs. NCBI nr
Match: gi|703088291|ref|XP_010093496.1| (Proliferating cell nuclear antigen large form [Morus notabilis]) HSP 1 Score: 421.4 bits (1082), Expect = 1.700e-114 Identity = 231/374 (61.76%), Postives = 285/374 (76.20%), Query Frame = 1
BLAST of Spo13439.1 vs. NCBI nr
Match: gi|661887358|emb|CDP09138.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 417.9 bits (1073), Expect = 1.800e-113 Identity = 208/262 (79.39%), Postives = 241/262 (91.98%), Query Frame = 1
BLAST of Spo13439.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QFU6_SPIOL (Proliferating cell nuclear antigen OS=Spinacia oleracea GN=SOVF_184080 PE=3 SV=1) HSP 1 Score: 703.7 bits (1815), Expect = 1.200e-199 Identity = 376/376 (100.00%), Postives = 376/376 (100.00%), Query Frame = 1
BLAST of Spo13439.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CX17_BETVU (Proliferating cell nuclear antigen OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g024430 PE=3 SV=1) HSP 1 Score: 612.5 bits (1578), Expect = 3.500e-172 Identity = 332/386 (86.01%), Postives = 353/386 (91.45%), Query Frame = 1
BLAST of Spo13439.1 vs. UniProtKB/TrEMBL
Match: A0A068UZV2_COFCA (Proliferating cell nuclear antigen OS=Coffea canephora GN=GSCOC_T00039257001 PE=3 SV=1) HSP 1 Score: 429.5 bits (1103), Expect = 4.300e-117 Identity = 238/373 (63.81%), Postives = 286/373 (76.68%), Query Frame = 1
BLAST of Spo13439.1 vs. UniProtKB/TrEMBL
Match: W9R1P0_9ROSA (Proliferating cell nuclear antigen OS=Morus notabilis GN=L484_001873 PE=3 SV=1) HSP 1 Score: 421.4 bits (1082), Expect = 1.200e-114 Identity = 231/374 (61.76%), Postives = 285/374 (76.20%), Query Frame = 1
BLAST of Spo13439.1 vs. UniProtKB/TrEMBL
Match: A0A068UNF1_COFCA (Proliferating cell nuclear antigen OS=Coffea canephora GN=GSCOC_T00028347001 PE=3 SV=1) HSP 1 Score: 417.9 bits (1073), Expect = 1.300e-113 Identity = 208/262 (79.39%), Postives = 241/262 (91.98%), Query Frame = 1
BLAST of Spo13439.1 vs. ExPASy Swiss-Prot
Match: PCNA_PEA (Proliferating cell nuclear antigen OS=Pisum sativum GN=PCNA PE=2 SV=1) HSP 1 Score: 417.5 bits (1072), Expect = 1.500e-115 Identity = 210/265 (79.25%), Postives = 239/265 (90.19%), Query Frame = 1
BLAST of Spo13439.1 vs. ExPASy Swiss-Prot
Match: PCNA_TOBAC (Proliferating cell nuclear antigen OS=Nicotiana tabacum GN=PCNA PE=2 SV=1) HSP 1 Score: 414.8 bits (1065), Expect = 9.700e-115 Identity = 206/262 (78.63%), Postives = 240/262 (91.60%), Query Frame = 1
BLAST of Spo13439.1 vs. ExPASy Swiss-Prot
Match: PCNA1_DAUCA (Proliferating cell nuclear antigen OS=Daucus carota PE=3 SV=1) HSP 1 Score: 412.5 bits (1059), Expect = 4.800e-114 Identity = 206/262 (78.63%), Postives = 239/262 (91.22%), Query Frame = 1
BLAST of Spo13439.1 vs. ExPASy Swiss-Prot
Match: PCNA2_DAUCA (Proliferating cell nuclear antigen large form OS=Daucus carota PE=2 SV=1) HSP 1 Score: 409.8 bits (1052), Expect = 3.100e-113 Identity = 229/374 (61.23%), Postives = 275/374 (73.53%), Query Frame = 1
BLAST of Spo13439.1 vs. ExPASy Swiss-Prot
Match: PCNA_CATRO (Proliferating cell nuclear antigen OS=Catharanthus roseus PE=2 SV=1) HSP 1 Score: 409.1 bits (1050), Expect = 5.300e-113 Identity = 204/265 (76.98%), Postives = 240/265 (90.57%), Query Frame = 1
BLAST of Spo13439.1 vs. TAIR (Arabidopsis)
Match: AT1G07370.1 (proliferating cellular nuclear antigen 1) HSP 1 Score: 402.9 bits (1034), Expect = 2.200e-112 Identity = 203/263 (77.19%), Postives = 236/263 (89.73%), Query Frame = 1
BLAST of Spo13439.1 vs. TAIR (Arabidopsis)
Match: AT2G29570.1 (proliferating cell nuclear antigen 2) HSP 1 Score: 401.0 bits (1029), Expect = 8.200e-112 Identity = 199/259 (76.83%), Postives = 233/259 (89.96%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo13439.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo13439.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo13439.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo13439.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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