Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAGAATTGATGTACGAAATCGGGCAAAATGCGTATATAAAGCTAGTGTTACATGCCTTAAAGCATAAGGCGAGCCCCGTTAATGGAGTTTTGGTTGGCCGCTTTGATGGTGGAAAGGGAGTGGTTGAAATTACTGATGCTATCCCTCTTTTTCATTCCAACATTGGTCTCCTCCCTGCTCTGGAGATCGCCCTGATGCAAGTATGTTCTATGTTCTCTCTCTTCTCTCTGCTGTCTATATACGCTCTTTTTCTGTTTGAAATTTTATTATTTCAATTGATATATGTTGCTTTTATTTGCTAAAAGTTGGTTGTGCGCTGTCATTTACCAAATGTTGTTATTATTGAAGCATAATTTGTTAGTGCTGTTCAAAGAAGTAACTATGTATATGACTTGGGTCTTTGGTACGGTTGCAGTAAATTTTAATAGTGATATCTTGTGTTCAACTGTGATTGAGTGGGGGGAGGGAGAGAAGTTTGTAGAGTGGTGTTGAACTTCTGTCTCATGTGTTAGCAGGTGTATTTTAATTGTCTGATTTATCAAACTTATCTTTTTGTATAAACTTCGCAACCCAGTGGGATCAAATTACATCATGCTAGTCCTTGAATGATTGAAGCTATTTTCTTGACGAGGGTCACGAGCTATGTTTACAGAGTGCCAGAGTTCATTTTATTGGTCATACTAGAGTTGCCAGATTTAGCTCATCAGTGAGTGAATGTTAATGGATCTGATTTGAACAGAAATGTGAATCACAGCCAATCCATATCGTGATGGAGAACAAAGACGATGAATTCAATACATATGTGAACCATAAAAATAGTACTGAAATGAACTAGAACAATATTTAGTTAACTGTTTTATGAAAATCCTAATGTGCAATTTACTTATATCGGTAGATTATTCGAATAACCATGGCTTTTCTCTACAACTGAATGATGAATTATTGGTTATTTGGTCTAGTGCTTTGCATCTCTTAAGAGACCCCTTTTTCCTGTAGTTGTCCTGCATACTTGGGATTCTACTCGGCTACTTCTCCAAGCCAACATTGGGTCATAAAAATATGATACTTCCTCTATTTTTTATTAGTTGCTAAATTTCTTTAGTCACGCTTGCTGCATAAATTCCATTATTATCTTTAATTATCTATAAACAAAAGTCATAAAAAAAAATTGATATTAATAAAATAATATTGAGACAAATCTAACAAGATCTCACATGACTATATTTTTTCTGGGTATAAATAACAGAAGATAATCACAGTAAATTATGTGAATAATGTCAAAAAATGGAACGTAGCAACTAATTAAAAACAGAAGTAGTATAATGTAAGTATCTTGCAGACCTTGCACTATAATGTTTCTTCAGTGAAATTCAACCATTTGTTAATGACTGCACTCTTAGGGTATTAATTGGTGTTTCCATGAAGGAGGAATTTCAAGAGTACGTGAGATGATATCATTTCTAGTATTGTCCTGCCATCTGGCACTCGGCAATCTGTCACAAAGAGCACAGTATCCTTTTAGTACTTTTTAATGGGCACTGCATCATGTTGGAAAAATCGGTCAAGGTCTTCTGATTTATGTGTGGAGATAGTTAAGAAACTACGTGGTAAAATTTTTCTTCGGGTAATCGATCTTTCTAGCTCCAATTGGGTTGAATATTTCCAGAGAATCTCTACTCTTCCAATCTGTTTGTTTGGCTGCTTTATGTGTGTTGTGGCTGAATGGAATAGGAATATATGTCTAATAGGGATCCCCTTGATGCCTAATTGCCTCCTCTTGTAGTGAATGTAGATTGTAGCCTCTCTTTGATCACATGCATCAGGGTCTTTCTGGAATTCTCTGATATGTACATTGATTGGTTCACTTCTTAATTTCATTTTTCTCTATATGATGTTCTCTTTGTAAGTTTTTATAAATTTATAATGATAAAAGTACATTTACTGATCTGTTGTCTACGTTATTAGATAGAAGAAAAATATGCAAGTCAAGGTTTGAGCTTGGTGGGTTACTTCCATGCAAATGAAAGGTCCGATGACAATGATCTCGGCAATGTGGCCAAGAACATCGGAGATCATATTTGTCGGTACTTTCCCCAGGCTGGAGTTCTCTTGGTATGCATAGTGACGAGATGCTCGCTCCCTCTTCTTTCCCTTTTAGAGTTAGGGTGCATTCAATGCCTTTTGTTTCTATCAATGCTGATGTTTGATGTTTGATTTCTTAGTTGGACAATAAAAAACTCGAAGCTTTACCAAAAGTGAAAGATCGCAGCCCTGTAATGCAGGTAGCTTTTCTTTCATTTTTCTATGATACGCTTGTAGTGTTTTTTTTTTTGTTTTTTTTTTGTGTGATAATAGCACCCTCTAATCTAGAGCTGCAGCCTGTAGGGAGTTTTTTTTTGTGTGACTGTGAACTGATTTCTTTCTCTGGCTCCATAGAAGATTTATGGTGTGTTTGGATAGCAAGATAGAAGGGGAAAGGAATGGGAGGGAAAGAGGACAAAAGGGAGGGGAAAGAAAGGCATGGTTAAGGTGAGCTCCATTTTCCCTCCAAATCTCTCCAATTTGGAGGGAAAATGGATCCCTCCCTCTTCCTCCCCTTCCTTCCCCAACCTTTTACCCAAACAAGGGAGCTTGTTCCTCTCCCTTTCCCTACCCTCCTTTTGTCTCCATTTTTTGTTATCCAAACAATGTGTTACTTTAGATGATAAATTGAGGCTTGACAGAAGTAGATACCTCTGTTTCTGTTTTCTCTGTACGCTAGCCTGTAGATCAGTTCACCAACCAACAAAGGAGAAATTATGTCTTAGCACAGTAGAGAGGGACTTATCACTTGTGTATATACACATACTCTCTTTACGTTTCGATGCATGTTTGGTGAGATAGTCAGAGGTAAATGGTTGGGACATAGGACTTTATGATAATGCTACTCAACAATCACATGCTGCATGTTGATTTGATCGCGCAAAGCCGCAAAATGTCCAATTGGCATTTTCTAGAATCTCATCCAAGTGAATTTGTTTATATTACATCACATGCCTAGTCCGCTGTTCAGTGTAATGAATTAGGTTTCTTTAATAAAAAGATAAAGCTTCCAAATTGTGTCCTATGTTTTGAGTTGTGAGCTTAGTGTATGTTGACCTCCAGCTCTAGCTAGTGACATTAAAATGGGCTGGAATTACTAAAAACACTGACTATCGGATGGAGAGATACTTGCCTTGACTCCACTTTGCTTTGTTATGTTGTAGGAGAGATACTTGCCTTGACTACATCCCTTGTTGCATTGCTTTGTTATGTTGTAGGAGAGATACTTGCCTTGACTCCACTTTCTGGTCATTATTCTTTTATATCTTAGAAGTTAGAAGTTTTATATTTGATTGGTGCTTCCATTATATCAGCTGTATTCAAAAGATGGATCCAAATGGAAAGTAGAGGAGAGTGGTCGGCTAGTATTGAAGGAGCCATCAGCAAACATAATATTATTGGATTATGCATCAACCCAGAAATGGGAGGAAATTGTAGACTTTGATGATCACCTTGACGACATTAACAAGTAAGTTCCTGTTATTTTACTCTAGCAACATGGTGTAAATTGCTCAGAATGACGGTATTAATCTTACATGCAATCGATTTCTTCTTGTAGGGACTGGCTAAATGCTGAATTATTCAAGTGAGACTTGTGAATCTAAGAACTCATCTGAGCTTGATCTGGTTGAATATTTAACTATTGAACTTGGAGCAAAGAACAATCAGATGGATTGATAGGCTCAGATCTCACGAGTATTGTTCTTGTCTACATTCTTGGAAGTTTTGGTAATTCAAATGAAGTATTTATACTGCCTTGTGGCTTTCTCACATTATCAAGAGCTAATCAGGATTTTGACCAATTTGTATTTGTGAAGACTTTACAAGTCTTCACTTTCATTACTCTTGTTTGCTCTTTTCTTAATTTATCAGCAACTAGAAAGGTGGAGTAGTTAAATTTAAATCCAATTTGTTTTGACAAGCAATTCGGTGTCTTTTTCAAACTTGCGGTAATGGTATACATGAATTCCCTTGTGCAAGGCACCTACATGCAACTTAGGCCCTAAACTCCTCATCTTCCCATGAATACATGATGAGAGTATCAAACCCAGTCACAGGTCACTGGATTTGTAGAGCAGTCCATCGTATTTTGAGATTTTGATATAAAAGTTGTTTTTTAC ATGGGAGAATTGATGTACGAAATCGGGCAAAATGCGTATATAAAGCTAGTGTTACATGCCTTAAAGCATAAGGCGAGCCCCGTTAATGGAGTTTTGGTTGGCCGCTTTGATGGTGGAAAGGGAGTGGTTGAAATTACTGATGCTATCCCTCTTTTTCATTCCAACATTGGTCTCCTCCCTGCTCTGGAGATCGCCCTGATGCAAATAGAAGAAAAATATGCAAGTCAAGGTTTGAGCTTGGTGGGTTACTTCCATGCAAATGAAAGGTCCGATGACAATGATCTCGGCAATGTGGCCAAGAACATCGGAGATCATATTTGTCGGTACTTTCCCCAGGCTGGAGTTCTCTTGTTGGACAATAAAAAACTCGAAGCTTTACCAAAAGTGAAAGATCGCAGCCCTGTAATGCAGCTGTATTCAAAAGATGGATCCAAATGGAAAGTAGAGGAGAGTGGTCGGCTAGTATTGAAGGAGCCATCAGCAAACATAATATTATTGGATTATGCATCAACCCAGAAATGGGAGGAAATTGTAGACTTTGATGATCACCTTGACGACATTAACAAGGACTGGCTAAATGCTGAATTATTCAAGTGAGACTTGTGAATCTAAGAACTCATCTGAGCTTGATCTGGTTGAATATTTAACTATTGAACTTGGAGCAAAGAACAATCAGATGGATTGATAGGCTCAGATCTCACGAGTATTGTTCTTGTCTACATTCTTGGAAGTTTTGGTAATTCAAATGAAGTATTTATACTGCCTTGTGGCTTTCTCACATTATCAAGAGCTAATCAGGATTTTGACCAATTTGTATTTGTGAAGACTTTACAAGTCTTCACTTTCATTACTCTTGTTTGCTCTTTTCTTAATTTATCAGCAACTAGAAAGGTGGAGTAGTTAAATTTAAATCCAATTTGTTTTGACAAGCAATTCGGTGTCTTTTTCAAACTTGCGGTAATGGTATACATGAATTCCCTTGTGCAAGGCACCTACATGCAACTTAGGCCCTAAACTCCTCATCTTCCCATGAATACATGATGAGAGTATCAAACCCAGTCACAGGTCACTGGATTTGTAGAGCAGTCCATCGTATTTTGAGATTTTGATATAAAAGTTGTTTTTTAC ATGGGAGAATTGATGTACGAAATCGGGCAAAATGCGTATATAAAGCTAGTGTTACATGCCTTAAAGCATAAGGCGAGCCCCGTTAATGGAGTTTTGGTTGGCCGCTTTGATGGTGGAAAGGGAGTGGTTGAAATTACTGATGCTATCCCTCTTTTTCATTCCAACATTGGTCTCCTCCCTGCTCTGGAGATCGCCCTGATGCAAATAGAAGAAAAATATGCAAGTCAAGGTTTGAGCTTGGTGGGTTACTTCCATGCAAATGAAAGGTCCGATGACAATGATCTCGGCAATGTGGCCAAGAACATCGGAGATCATATTTGTCGGTACTTTCCCCAGGCTGGAGTTCTCTTGTTGGACAATAAAAAACTCGAAGCTTTACCAAAAGTGAAAGATCGCAGCCCTGTAATGCAGCTGTATTCAAAAGATGGATCCAAATGGAAAGTAGAGGAGAGTGGTCGGCTAGTATTGAAGGAGCCATCAGCAAACATAATATTATTGGATTATGCATCAACCCAGAAATGGGAGGAAATTGTAGACTTTGATGATCACCTTGACGACATTAACAAGGACTGGCTAAATGCTGAATTATTCAAGTGA MGELMYEIGQNAYIKLVLHALKHKASPVNGVLVGRFDGGKGVVEITDAIPLFHSNIGLLPALEIALMQIEEKYASQGLSLVGYFHANERSDDNDLGNVAKNIGDHICRYFPQAGVLLLDNKKLEALPKVKDRSPVMQLYSKDGSKWKVEESGRLVLKEPSANIILLDYASTQKWEEIVDFDDHLDDINKDWLNAELFK Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo13441.1 vs. NCBI nr
Match: gi|902188566|gb|KNA11191.1| (hypothetical protein SOVF_137500 [Spinacia oleracea]) HSP 1 Score: 402.1 bits (1032), Expect = 5.500e-109 Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1
BLAST of Spo13441.1 vs. NCBI nr
Match: gi|731315170|ref|XP_010690192.1| (PREDICTED: ER membrane protein complex subunit 8/9 homolog [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 359.4 bits (921), Expect = 4.100e-96 Identity = 172/198 (86.87%), Postives = 188/198 (94.95%), Query Frame = 1
BLAST of Spo13441.1 vs. NCBI nr
Match: gi|90762228|gb|ABD97881.1| (putative CPF 0172 family protein [Salicornia bigelovii]) HSP 1 Score: 357.1 bits (915), Expect = 2.000e-95 Identity = 171/198 (86.36%), Postives = 188/198 (94.95%), Query Frame = 1
BLAST of Spo13441.1 vs. NCBI nr
Match: gi|595829732|ref|XP_007205927.1| (hypothetical protein PRUPE_ppa011638mg [Prunus persica]) HSP 1 Score: 292.4 bits (747), Expect = 6.100e-76 Identity = 139/200 (69.50%), Postives = 168/200 (84.00%), Query Frame = 1
BLAST of Spo13441.1 vs. NCBI nr
Match: gi|645215870|ref|XP_008218489.1| (PREDICTED: ER membrane protein complex subunit 8/9 homolog [Prunus mume]) HSP 1 Score: 292.0 bits (746), Expect = 8.000e-76 Identity = 139/200 (69.50%), Postives = 168/200 (84.00%), Query Frame = 1
BLAST of Spo13441.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QXF8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_137500 PE=4 SV=1) HSP 1 Score: 402.1 bits (1032), Expect = 3.800e-109 Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1
BLAST of Spo13441.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FR80_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g024360 PE=4 SV=1) HSP 1 Score: 359.4 bits (921), Expect = 2.800e-96 Identity = 172/198 (86.87%), Postives = 188/198 (94.95%), Query Frame = 1
BLAST of Spo13441.1 vs. UniProtKB/TrEMBL
Match: Q1W2L0_SALBI (Putative CPF 0172 family protein OS=Salicornia bigelovii GN=UPF1 PE=2 SV=1) HSP 1 Score: 357.1 bits (915), Expect = 1.400e-95 Identity = 171/198 (86.36%), Postives = 188/198 (94.95%), Query Frame = 1
BLAST of Spo13441.1 vs. UniProtKB/TrEMBL
Match: M5W166_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011638mg PE=4 SV=1) HSP 1 Score: 292.4 bits (747), Expect = 4.300e-76 Identity = 139/200 (69.50%), Postives = 168/200 (84.00%), Query Frame = 1
BLAST of Spo13441.1 vs. UniProtKB/TrEMBL
Match: A0A067KT59_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01069 PE=4 SV=1) HSP 1 Score: 290.0 bits (741), Expect = 2.100e-75 Identity = 140/201 (69.65%), Postives = 170/201 (84.58%), Query Frame = 1
BLAST of Spo13441.1 vs. ExPASy Swiss-Prot
Match: EMC89_ARATH (ER membrane protein complex subunit 8/9 homolog OS=Arabidopsis thaliana GN=EMB2731 PE=2 SV=1) HSP 1 Score: 268.5 bits (685), Expect = 5.900e-71 Identity = 134/201 (66.67%), Postives = 161/201 (80.10%), Query Frame = 1
BLAST of Spo13441.1 vs. ExPASy Swiss-Prot
Match: EMC9_MOUSE (ER membrane protein complex subunit 9 OS=Mus musculus GN=Emc9 PE=1 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 1.400e-27 Identity = 75/200 (37.50%), Postives = 113/200 (56.50%), Query Frame = 1
BLAST of Spo13441.1 vs. ExPASy Swiss-Prot
Match: EMC9_RAT (ER membrane protein complex subunit 9 OS=Rattus norvegicus GN=Emc9 PE=2 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 3.400e-26 Identity = 73/200 (36.50%), Postives = 110/200 (55.00%), Query Frame = 1
BLAST of Spo13441.1 vs. ExPASy Swiss-Prot
Match: EMC9_HUMAN (ER membrane protein complex subunit 9 OS=Homo sapiens GN=EMC9 PE=1 SV=3) HSP 1 Score: 118.6 bits (296), Expect = 7.600e-26 Identity = 71/200 (35.50%), Postives = 111/200 (55.50%), Query Frame = 1
BLAST of Spo13441.1 vs. ExPASy Swiss-Prot
Match: EMC8_RAT (ER membrane protein complex subunit 8 OS=Rattus norvegicus GN=Emc8 PE=2 SV=1) HSP 1 Score: 108.6 bits (270), Expect = 7.900e-23 Identity = 62/196 (31.63%), Postives = 93/196 (47.45%), Query Frame = 1
BLAST of Spo13441.1 vs. TAIR (Arabidopsis)
Match: AT5G55940.1 (Uncharacterised protein family (UPF0172)) HSP 1 Score: 268.5 bits (685), Expect = 3.300e-72 Identity = 134/201 (66.67%), Postives = 161/201 (80.10%), Query Frame = 1
BLAST of Spo13441.1 vs. TAIR (Arabidopsis)
Match: AT5G51620.2 (Uncharacterised protein family (UPF0172)) HSP 1 Score: 55.8 bits (133), Expect = 3.400e-8 Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo13441.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo13441.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo13441.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo13441.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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