Spo13459 (gene) | SpinachBase

Overview


Name	Spo13459
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	glycine-rich protein
Location	chr4 : 12713329 .. 12713790 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAACATCAAAGCAACAAAAGTCACCTTCCTTCTTACACTTCTCATCATCACAACAATCTCTTCCTTAACCGGGGCAACCCGGTCCAACCCGAACTCTAAGGGCACCAAGTCCAAGTCCAAGGGTGGAGGTGCTGGTTTTGGTGGTGGTAGCGGCGATAGCGGTGACGACTTCTTCGGGCCGGGTGGTGGGTTTGGAATACCCGGGTACAATGACCCGGGAATGTTCGGAGGCGGATACGGATACGGATACGGCTCCCCTAGCGGAGGCCACGGAAAGAGTGGGACTGTAAGACCAAGTGTGGTTTGTAAGGAAACAGGTCCTTGTTATATGAAGAAACTCCGGTGCCCGGCAAAGTGCTTTTACTCCTTTAGTAGGGCCGGTAAGGGTTACGGTGGCGGAGGTGGTGGTGGTGGGTGCACCATGGATTGCAAGAAGAATTGTATTGCTTATTGTTGA

mRNA sequence

ATGATGAACATCAAAGCAACAAAAGTCACCTTCCTTCTTACACTTCTCATCATCACAACAATCTCTTCCTTAACCGGGGCAACCCGGTCCAACCCGAACTCTAAGGGCACCAAGTCCAAGTCCAAGGGTGGAGGTGCTGGTTTTGGTGGTGGTAGCGGCGATAGCGGTGACGACTTCTTCGGGCCGGGTGGTGGGTTTGGAATACCCGGGTACAATGACCCGGGAATGTTCGGAGGCGGATACGGATACGGATACGGCTCCCCTAGCGGAGGCCACGGAAAGAGTGGGACTGTAAGACCAAGTGTGGTTTGTAAGGAAACAGGTCCTTGTTATATGAAGAAACTCCGGTGCCCGGCAAAGTGCTTTTACTCCTTTAGTAGGGCCGGTAAGGGTTACGGTGGCGGAGGTGGTGGTGGTGGGTGCACCATGGATTGCAAGAAGAATTGTATTGCTTATTGTTGA

Coding sequence (CDS)

ATGATGAACATCAAAGCAACAAAAGTCACCTTCCTTCTTACACTTCTCATCATCACAACAATCTCTTCCTTAACCGGGGCAACCCGGTCCAACCCGAACTCTAAGGGCACCAAGTCCAAGTCCAAGGGTGGAGGTGCTGGTTTTGGTGGTGGTAGCGGCGATAGCGGTGACGACTTCTTCGGGCCGGGTGGTGGGTTTGGAATACCCGGGTACAATGACCCGGGAATGTTCGGAGGCGGATACGGATACGGATACGGCTCCCCTAGCGGAGGCCACGGAAAGAGTGGGACTGTAAGACCAAGTGTGGTTTGTAAGGAAACAGGTCCTTGTTATATGAAGAAACTCCGGTGCCCGGCAAAGTGCTTTTACTCCTTTAGTAGGGCCGGTAAGGGTTACGGTGGCGGAGGTGGTGGTGGTGGGTGCACCATGGATTGCAAGAAGAATTGTATTGCTTATTGTTGA

Protein sequence

MMNIKATKVTFLLTLLIITTISSLTGATRSNPNSKGTKSKSKGGGAGFGGGSGDSGDDFFGPGGGFGIPGYNDPGMFGGGYGYGYGSPSGGHGKSGTVRPSVVCKETGPCYMKKLRCPAKCFYSFSRAGKGYGGGGGGGGCTMDCKKNCIAYC

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo13459.1	Spo13459.1	mRNA

Homology

[Close]

BLAST of Spo13459.1 vs. NCBI nr
Match: gi|902146938|gb|KNA05117.1| (hypothetical protein SOVF_193250 [Spinacia oleracea])

HSP 1 Score: 297.7 bits (761), Expect = 1.100e-77
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1

		  
Query: 1   MMNIKATKVTFLLTLLIITTISSLTGATRSNPNSKGTKSKSKGGGAGFGGGSGDSGDDFF 60
           MMNIKATKVTFLLTLLIITTISSLTGATRSNPNSKGTKSKSKGGGAGFGGGSGDSGDDFF
Sbjct: 1   MMNIKATKVTFLLTLLIITTISSLTGATRSNPNSKGTKSKSKGGGAGFGGGSGDSGDDFF 60

Query: 61  GPGGGFGIPGYNDPGMFGGGYGYGYGSPSGGHGKSGTVRPSVVCKETGPCYMKKLRCPAK 120
           GPGGGFGIPGYNDPGMFGGGYGYGYGSPSGGHGKSGTVRPSVVCKETGPCYMKKLRCPAK
Sbjct: 61  GPGGGFGIPGYNDPGMFGGGYGYGYGSPSGGHGKSGTVRPSVVCKETGPCYMKKLRCPAK 120

Query: 121 CFYSFSRAGKGYGGGGGGGGCTMDCKKNCIAYC 154
           CFYSFSRAGKGYGGGGGGGGCTMDCKKNCIAYC
Sbjct: 121 CFYSFSRAGKGYGGGGGGGGCTMDCKKNCIAYC 153

[Close]

BLAST of Spo13459.1 vs. NCBI nr
Match: gi|731369550|ref|XP_010696588.1| (PREDICTED: glycine-rich protein 2-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 214.9 bits (546), Expect = 9.600e-53
Identity = 117/155 (75.48%), Postives = 127/155 (81.94%), Query Frame = 1

		  
Query: 2   MNIKATKVTFLLTLL-IITTISSLTGATRSNPNSKGTKSKSKGGGAGFGGGSGDSGDDFF 61
           MN K TK TFL+ +L IITTISSL+GATR+ P SKGTK+K  GGG           DDFF
Sbjct: 1   MNTKVTKTTFLIFILVIITTISSLSGATRTYPTSKGTKAK--GGG-----------DDFF 60

Query: 62  GPGGGFGIPGYNDPGMFGGGYGYGYG--SPSGGHGKSGTVRPSVVCKETGPCYMKKLRCP 121
           G GGGFGIPG+NDPGMFGGGYGYGYG  SPSGGH KSGT+RPS+VCKE GPCYMKKL CP
Sbjct: 61  GSGGGFGIPGFNDPGMFGGGYGYGYGYGSPSGGHSKSGTIRPSMVCKEKGPCYMKKLMCP 120

Query: 122 AKCFYSFSRAGKGYGGGGGGGGCTMDCKKNCIAYC 154
           AKCF SFSR+GKGYGGGGGGGGCTMDCKK C+AYC
Sbjct: 121 AKCFTSFSRSGKGYGGGGGGGGCTMDCKKKCVAYC 142

[Close]

BLAST of Spo13459.1 vs. NCBI nr
Match: gi|703084978|ref|XP_010092614.1| (hypothetical protein L484_006376 [Morus notabilis])

HSP 1 Score: 161.4 bits (407), Expect = 1.300e-36
Identity = 91/145 (62.76%), Postives = 106/145 (73.10%), Query Frame = 1

		  
Query: 10  TFLLTLLIITTISSLTGATRSNPNSKGTKSKSKGGGAGFGGGSGDSGDD-FFGPGGGFGI 69
           +FLLTLL+IT++SSL+ + R  P S G  S    G  G   GS  + +  FFGPG GF I
Sbjct: 6   SFLLTLLLITSLSSLSLSAR--PGSDGPFSAELKGSKGSSPGSNSNNNGGFFGPGPGFNI 65

Query: 70  PGYNDPGMFGGGYGYGYGSPSGGHGKSGTVRPSVVCKETGPCYMKKLRCPAKCFYSFSRA 129
           PG+ +   FGGGYGYGYG P GGH K G VRP+VVC + GPCY KKL CPAKCF S+SR+
Sbjct: 66  PGFGNGNGFGGGYGYGYGGPKGGHDKGGIVRPTVVCTDKGPCYKKKLTCPAKCFTSYSRS 125

Query: 130 GKGYGGGGGGGGCTMDCKKNCIAYC 154
           GKGYGGGGGGGGCTMDCKK C+AYC
Sbjct: 126 GKGYGGGGGGGGCTMDCKKKCVAYC 148

[Close]

BLAST of Spo13459.1 vs. NCBI nr
Match: gi|351721048|ref|NP_001235149.1| (uncharacterized protein LOC100499725 precursor [Glycine max])

HSP 1 Score: 159.1 bits (401), Expect = 6.300e-36
Identity = 90/154 (58.44%), Postives = 109/154 (70.78%), Query Frame = 1

		  
Query: 4   IKATKVTFLLTLLIITTISSLTGATRSNPNS-KGTKSKSKGGGAGFGGGSGDSGDDFFGP 63
           +K T    LL+LL++ T  SL     SNP+  K  K+ ++GGGAG G G       FFGP
Sbjct: 21  MKPTITILLLSLLLLITSPSLATRPASNPDQVKHNKNNNQGGGAGAGAGG------FFGP 80

Query: 64  GGGFGIPGYNDP---GMFGGGYGYGYGSPSGGHGKSGTVRPSVVCKETGPCYMKKLRCPA 123
           GGGF IPG+ +    G+ GGGYG GYG P+GG  K G +RP+VVCK+ GPC+ KK+ CPA
Sbjct: 81  GGGFSIPGFGNGFGNGIIGGGYGSGYGGPNGGSSKGGIIRPTVVCKDKGPCFQKKVTCPA 140

Query: 124 KCFYSFSRAGKGYGGGGGGGGCTMDCKKNCIAYC 154
           KCF SFSR+GKGYGGGGGGGGCT+DCKK CIAYC
Sbjct: 141 KCFSSFSRSGKGYGGGGGGGGCTIDCKKKCIAYC 168

[Close]

BLAST of Spo13459.1 vs. NCBI nr
Match: gi|734337635|gb|KHN08572.1| (hypothetical protein glysoja_014337 [Glycine soja])

HSP 1 Score: 157.9 bits (398), Expect = 1.400e-35
Identity = 89/154 (57.79%), Postives = 109/154 (70.78%), Query Frame = 1

		  
Query: 4   IKATKVTFLLTLLIITTISSLTGATRSNPNS-KGTKSKSKGGGAGFGGGSGDSGDDFFGP 63
           +K T    LL+LL++ T  SL     SNP+  K  K+ ++GGGAG G G       FFGP
Sbjct: 21  MKPTITILLLSLLLLITSPSLATRPASNPDQVKHNKNNNQGGGAGAGAGG------FFGP 80

Query: 64  GGGFGIPGYNDP---GMFGGGYGYGYGSPSGGHGKSGTVRPSVVCKETGPCYMKKLRCPA 123
           GGGF IPG+ +    G+ GGGYG GYG P+GG  K G +RP+V+CK+ GPC+ KK+ CPA
Sbjct: 81  GGGFSIPGFGNGFGNGIIGGGYGSGYGGPNGGSSKGGIIRPTVLCKDKGPCFQKKVTCPA 140

Query: 124 KCFYSFSRAGKGYGGGGGGGGCTMDCKKNCIAYC 154
           KCF SFSR+GKGYGGGGGGGGCT+DCKK CIAYC
Sbjct: 141 KCFSSFSRSGKGYGGGGGGGGCTIDCKKKCIAYC 168

[Close]

BLAST of Spo13459.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QCX8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_193250 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 7.900e-78
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1

		  
Query: 1   MMNIKATKVTFLLTLLIITTISSLTGATRSNPNSKGTKSKSKGGGAGFGGGSGDSGDDFF 60
           MMNIKATKVTFLLTLLIITTISSLTGATRSNPNSKGTKSKSKGGGAGFGGGSGDSGDDFF
Sbjct: 1   MMNIKATKVTFLLTLLIITTISSLTGATRSNPNSKGTKSKSKGGGAGFGGGSGDSGDDFF 60

Query: 61  GPGGGFGIPGYNDPGMFGGGYGYGYGSPSGGHGKSGTVRPSVVCKETGPCYMKKLRCPAK 120
           GPGGGFGIPGYNDPGMFGGGYGYGYGSPSGGHGKSGTVRPSVVCKETGPCYMKKLRCPAK
Sbjct: 61  GPGGGFGIPGYNDPGMFGGGYGYGYGSPSGGHGKSGTVRPSVVCKETGPCYMKKLRCPAK 120

Query: 121 CFYSFSRAGKGYGGGGGGGGCTMDCKKNCIAYC 154
           CFYSFSRAGKGYGGGGGGGGCTMDCKKNCIAYC
Sbjct: 121 CFYSFSRAGKGYGGGGGGGGCTMDCKKNCIAYC 153

[Close]

BLAST of Spo13459.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BA53_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g199550 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 6.700e-53
Identity = 117/155 (75.48%), Postives = 127/155 (81.94%), Query Frame = 1

		  
Query: 2   MNIKATKVTFLLTLL-IITTISSLTGATRSNPNSKGTKSKSKGGGAGFGGGSGDSGDDFF 61
           MN K TK TFL+ +L IITTISSL+GATR+ P SKGTK+K  GGG           DDFF
Sbjct: 1   MNTKVTKTTFLIFILVIITTISSLSGATRTYPTSKGTKAK--GGG-----------DDFF 60

Query: 62  GPGGGFGIPGYNDPGMFGGGYGYGYG--SPSGGHGKSGTVRPSVVCKETGPCYMKKLRCP 121
           G GGGFGIPG+NDPGMFGGGYGYGYG  SPSGGH KSGT+RPS+VCKE GPCYMKKL CP
Sbjct: 61  GSGGGFGIPGFNDPGMFGGGYGYGYGYGSPSGGHSKSGTIRPSMVCKEKGPCYMKKLMCP 120

Query: 122 AKCFYSFSRAGKGYGGGGGGGGCTMDCKKNCIAYC 154
           AKCF SFSR+GKGYGGGGGGGGCTMDCKK C+AYC
Sbjct: 121 AKCFTSFSRSGKGYGGGGGGGGCTMDCKKKCVAYC 142

[Close]

BLAST of Spo13459.1 vs. UniProtKB/TrEMBL
Match: W9QRB6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006376 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.800e-37
Identity = 91/145 (62.76%), Postives = 106/145 (73.10%), Query Frame = 1

		  
Query: 10  TFLLTLLIITTISSLTGATRSNPNSKGTKSKSKGGGAGFGGGSGDSGDD-FFGPGGGFGI 69
           +FLLTLL+IT++SSL+ + R  P S G  S    G  G   GS  + +  FFGPG GF I
Sbjct: 6   SFLLTLLLITSLSSLSLSAR--PGSDGPFSAELKGSKGSSPGSNSNNNGGFFGPGPGFNI 65

Query: 70  PGYNDPGMFGGGYGYGYGSPSGGHGKSGTVRPSVVCKETGPCYMKKLRCPAKCFYSFSRA 129
           PG+ +   FGGGYGYGYG P GGH K G VRP+VVC + GPCY KKL CPAKCF S+SR+
Sbjct: 66  PGFGNGNGFGGGYGYGYGGPKGGHDKGGIVRPTVVCTDKGPCYKKKLTCPAKCFTSYSRS 125

Query: 130 GKGYGGGGGGGGCTMDCKKNCIAYC 154
           GKGYGGGGGGGGCTMDCKK C+AYC
Sbjct: 126 GKGYGGGGGGGGCTMDCKKKCVAYC 148

[Close]

BLAST of Spo13459.1 vs. UniProtKB/TrEMBL
Match: C6SVW2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G244800 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.400e-36
Identity = 90/154 (58.44%), Postives = 109/154 (70.78%), Query Frame = 1

		  
Query: 4   IKATKVTFLLTLLIITTISSLTGATRSNPNS-KGTKSKSKGGGAGFGGGSGDSGDDFFGP 63
           +K T    LL+LL++ T  SL     SNP+  K  K+ ++GGGAG G G       FFGP
Sbjct: 21  MKPTITILLLSLLLLITSPSLATRPASNPDQVKHNKNNNQGGGAGAGAGG------FFGP 80

Query: 64  GGGFGIPGYNDP---GMFGGGYGYGYGSPSGGHGKSGTVRPSVVCKETGPCYMKKLRCPA 123
           GGGF IPG+ +    G+ GGGYG GYG P+GG  K G +RP+VVCK+ GPC+ KK+ CPA
Sbjct: 81  GGGFSIPGFGNGFGNGIIGGGYGSGYGGPNGGSSKGGIIRPTVVCKDKGPCFQKKVTCPA 140

Query: 124 KCFYSFSRAGKGYGGGGGGGGCTMDCKKNCIAYC 154
           KCF SFSR+GKGYGGGGGGGGCT+DCKK CIAYC
Sbjct: 141 KCFSSFSRSGKGYGGGGGGGGCTIDCKKKCIAYC 168

[Close]

BLAST of Spo13459.1 vs. UniProtKB/TrEMBL
Match: A0A0B2PLW1_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_014337 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 9.700e-36
Identity = 89/154 (57.79%), Postives = 109/154 (70.78%), Query Frame = 1

		  
Query: 4   IKATKVTFLLTLLIITTISSLTGATRSNPNS-KGTKSKSKGGGAGFGGGSGDSGDDFFGP 63
           +K T    LL+LL++ T  SL     SNP+  K  K+ ++GGGAG G G       FFGP
Sbjct: 21  MKPTITILLLSLLLLITSPSLATRPASNPDQVKHNKNNNQGGGAGAGAGG------FFGP 80

Query: 64  GGGFGIPGYNDP---GMFGGGYGYGYGSPSGGHGKSGTVRPSVVCKETGPCYMKKLRCPA 123
           GGGF IPG+ +    G+ GGGYG GYG P+GG  K G +RP+V+CK+ GPC+ KK+ CPA
Sbjct: 81  GGGFSIPGFGNGFGNGIIGGGYGSGYGGPNGGSSKGGIIRPTVLCKDKGPCFQKKVTCPA 140

Query: 124 KCFYSFSRAGKGYGGGGGGGGCTMDCKKNCIAYC 154
           KCF SFSR+GKGYGGGGGGGGCT+DCKK CIAYC
Sbjct: 141 KCFSSFSRSGKGYGGGGGGGGCTIDCKKKCIAYC 168

[Close]

BLAST of Spo13459.1 vs. TAIR (Arabidopsis)
Match: AT4G21620.1 (glycine-rich protein)

HSP 1 Score: 134.4 bits (337), Expect = 5.800e-32
Identity = 86/147 (58.50%), Postives = 93/147 (63.27%), Query Frame = 1

		  
Query: 7   TKVTFLLTLLIITTISSLTGATRSNPNSKGTKSKSKGGGAGFGGGSGDSGDDFFGPGGGF 66
           TK   L +LLII  +S+   A          + KS   G GFGG  G      F PG G 
Sbjct: 3   TKSILLASLLIIILVSATESA----------RQKSGNDGLGFGGVPGSG----FIPGFGN 62

Query: 67  GIPGYNDPGMFGGGYGYGYGSPSGGHGKSGTVRPSVVCKETGPCYMKKLRCPAKCFYSFS 126
           G PG       GGGYG G+G PSGG GK G VRP+V CKE GPC  KKLRCPAKCF SFS
Sbjct: 63  GFPGTG----VGGGYGGGFGGPSGGFGKGGVVRPTVTCKEKGPCNGKKLRCPAKCFKSFS 122

Query: 127 RAGKGYGGGGGGGGCTMDCKKNCIAYC 154
           R+GKGYGGGGGGGGCTMDCKK CIAYC
Sbjct: 123 RSGKGYGGGGGGGGCTMDCKKKCIAYC 131

[Close]

BLAST of Spo13459.1 vs. TAIR (Arabidopsis)
Match: AT1G61255.1 (BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G21620.2))

HSP 1 Score: 84.0 bits (206), Expect = 9.000e-17
Identity = 71/153 (46.41%), Postives = 86/153 (56.21%), Query Frame = 1

		  
Query: 6   ATKVTFLLTLLIIT-TISSLTGATRSNPNSKGTKS----KSKGGGAGFGGGSGDSGDDFF 65
           ATK+  L T+L++T T+S    A   + +S G+ S    K        G GSG       
Sbjct: 2   ATKLNLLFTILLLTLTLSHSRPARPESSSSTGSYSDQLKKHSKDNYNKGYGSGGYPGLTT 61

Query: 66  GPGGGFGIPGYNDPGMFGGGYGYGYGSPSGGHGKSGTVRPSVVCKETGPCYMKKLRCPAK 125
            P  GF +PG         G G  Y   SGG+ K   VR +V+C+E G CYMKKL CPAK
Sbjct: 62  EPATGFILPG--------SGPGGSYSELSGGYSKGRGVRLTVMCEEKGHCYMKKLTCPAK 121

Query: 126 CFYSFSRAGKGYGGGGGGGGCTMDCKKNCIAYC 154
           CF S SR GKGY  GGGGGGCT+DCKK C+AYC
Sbjct: 122 CFKSLSRKGKGY--GGGGGGCTIDCKK-CVAYC 143

The following BLAST results are available for this feature:

BLAST of Spo13459.1 vs. NCBI nr
BLAST of Spo13459.1 vs. UniProtKB/TrEMBL
BLAST of Spo13459.1 vs. ExPASy Swiss-Prot
BLAST of Spo13459.1 vs. TAIR (Arabidopsis)

BLAST of Spo13459.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902146938\|gb\|KNA05117.1\|	1.1e-77	100.	hypothetical protein SOVF_1932...	[more]
gi\|731369550\|ref\|XP_010696588.1\|	9.6e-53	75.4	PREDICTED: glycine-rich protei...	[more]
gi\|703084978\|ref\|XP_010092614.1\|	1.3e-36	62.7	hypothetical protein L484_0063...	[more]
gi\|351721048\|ref\|NP_001235149.1\|	6.3e-36	58.4	uncharacterized protein LOC100...	[more]
gi\|734337635\|gb\|KHN08572.1\|	1.4e-35	57.7	hypothetical protein glysoja_0...	[more]

BLAST of Spo13459.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QCX8_SPIOL	7.9e-78	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BA53_BETVU	6.7e-53	75.4	Uncharacterized protein OS=Bet...	[more]
W9QRB6_9ROSA	8.8e-37	62.7	Uncharacterized protein OS=Mor...	[more]
C6SVW2_SOYBN	4.4e-36	58.4	Uncharacterized protein OS=Gly...	[more]
A0A0B2PLW1_GLYSO	9.7e-36	57.7	Uncharacterized protein OS=Gly...	[more]

BLAST of Spo13459.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo13459.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT4G21620.1	5.8e-32	58.5	glycine-rich protein	[more]
AT1G61255.1	9.0e-17	46.4	BEST Arabidopsis thaliana prot...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34789	FAMILY NOT NAMED	coord: 3..153 score: 8.4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006412	translation
biological_process	GO:0006766	vitamin metabolic process
biological_process	GO:0001510	RNA methylation
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0009735	response to cytokinin
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0009853	photorespiration
biological_process	GO:0006499	N-terminal protein myristoylation
biological_process	GO:0043248	proteasome assembly
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0019748	secondary metabolic process
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0030001	metal ion transport
biological_process	GO:0006810	transport
biological_process	GO:0046777	protein autophosphorylation
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0006887	exocytosis
biological_process	GO:0007165	signal transduction
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0009249	protein lipoylation
biological_process	GO:0009117	nucleotide metabolic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0009695	jasmonic acid biosynthetic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006546	glycine catabolic process
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0030154	cell differentiation
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0006733	oxidoreduction coenzyme metabolic process
biological_process	GO:0080090	regulation of primary metabolic process
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0060255	regulation of macromolecule metabolic process
biological_process	GO:0031323	regulation of cellular metabolic process
biological_process	GO:0015031	protein transport
biological_process	GO:0009657	plastid organization
biological_process	GO:0034660	ncRNA metabolic process
biological_process	GO:0009987	cellular process
biological_process	GO:0044085	cellular component biogenesis
biological_process	GO:0044262	cellular carbohydrate metabolic process
biological_process	GO:0008643	carbohydrate transport
biological_process	GO:0008152	metabolic process
biological_process	GO:0015991	ATP hydrolysis coupled proton transport
biological_process	GO:0080167	response to karrikin
biological_process	GO:0009651	response to salt stress
biological_process	GO:0016120	carotene biosynthetic process
biological_process	GO:0043631	RNA polyadenylation
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0006096	glycolytic process
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0009790	embryo development
biological_process	GO:0051301	cell division
biological_process	GO:0009407	toxin catabolic process
biological_process	GO:0010103	stomatal complex morphogenesis
biological_process	GO:0009088	threonine biosynthetic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0009089	lysine biosynthetic process via diaminopimelate
biological_process	GO:0006563	L-serine metabolic process
biological_process	GO:0006544	glycine metabolic process
biological_process	GO:0006506	GPI anchor biosynthetic process
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0044070	regulation of anion transport
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0016123	xanthophyll biosynthetic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006508	proteolysis
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0042545	cell wall modification
biological_process	GO:0006465	signal peptide processing
biological_process	GO:0009932	cell tip growth
biological_process	GO:0006635	fatty acid beta-oxidation
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0042967	obsolete acyl-carrier-protein biosynthetic process
biological_process	GO:0016558	protein import into peroxisome matrix
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:0006897	endocytosis
biological_process	GO:0006909	phagocytosis
biological_process	GO:0009107	lipoate biosynthetic process
cellular_component	GO:0005839	proteasome core complex
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005759	mitochondrial matrix
cellular_component	GO:0000502	proteasome complex
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005802	trans-Golgi network
cellular_component	GO:0030659	cytoplasmic vesicle membrane
cellular_component	GO:0005768	endosome
cellular_component	GO:0033179	proton-transporting V-type ATPase, V0 domain
cellular_component	GO:0000145	exocyst
cellular_component	GO:0005741	mitochondrial outer membrane
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0042651	thylakoid membrane
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009505	plant-type cell wall
cellular_component	GO:0032991	protein-containing complex
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009524	phragmoplast
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0031969	chloroplast membrane
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005665	DNA-directed RNA polymerase II, core complex
cellular_component	GO:0019773	proteasome core complex, alpha-subunit complex
cellular_component	GO:0005856	cytoskeleton
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005749	mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)
cellular_component	GO:0005618	cell wall
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0019706	protein-cysteine S-palmitoyltransferase activity
molecular_function	GO:0000035	acyl binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004072	aspartate kinase activity
molecular_function	GO:0016597	amino acid binding
molecular_function	GO:0005351	carbohydrate:proton symporter activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0016758	transferase activity, transferring hexosyl groups
molecular_function	GO:0004652	polynucleotide adenylyltransferase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0045435	lycopene epsilon cyclase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016992	lipoate synthase activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0008236	serine-type peptidase activity
molecular_function	GO:0004298	threonine-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function	GO:0008565	protein transporter activity
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0004683	calmodulin-dependent protein kinase activity
molecular_function	GO:0042626	ATPase activity, coupled to transmembrane movement of substances
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0015078	proton transmembrane transporter activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0008308	voltage-gated anion channel activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo24625	0.83	Barchart \| Table
Spo14194	0.83	Barchart \| Table
Spo00898	0.82	Barchart \| Table
Spo12253	0.82	Barchart \| Table
Spo14687	0.82	Barchart \| Table
Spo00936	0.81	Barchart \| Table
Spo05029	0.81	Barchart \| Table
Spo03618	0.81	Barchart \| Table
Spo14849	0.80	Barchart \| Table
Spo19206	0.78	Barchart \| Table
Spo14441	0.78	Barchart \| Table
Spo01914	0.77	Barchart \| Table
Spo12128	0.73	Barchart \| Table
Spo12202	0.72	Barchart \| Table
Spo15603	0.72	Barchart \| Table
Spo12176	0.72	Barchart \| Table
Spo11733	0.71	Barchart \| Table
Spo16786	0.71	Barchart \| Table
Spo02085	0.69	Barchart \| Table
Spo06681	0.69	Barchart \| Table
Spo06805	0.69	Barchart \| Table
Spo01929	0.69	Barchart \| Table
Spo25856	0.69	Barchart \| Table
Spo08540	0.69	Barchart \| Table
Spo27102	0.69	Barchart \| Table
Spo03608	0.68	Barchart \| Table
Spo04923	0.68	Barchart \| Table
Spo20677	0.68	Barchart \| Table
Spo23123	0.68	Barchart \| Table
Spo18103	0.68	Barchart \| Table
Spo09803	0.68	Barchart \| Table
Spo17016	0.68	Barchart \| Table
Spo23908	0.68	Barchart \| Table
Spo20071	0.68	Barchart \| Table
Spo09674	0.67	Barchart \| Table
Spo00336	0.67	Barchart \| Table
Spo02107	0.67	Barchart \| Table
Spo05228	0.67	Barchart \| Table
Spo05531	0.67	Barchart \| Table
Spo09015	0.67	Barchart \| Table
Spo12663	0.67	Barchart \| Table
Spo12942	0.67	Barchart \| Table
Spo13579	0.67	Barchart \| Table
Spo16945	0.67	Barchart \| Table
Spo17216	0.67	Barchart \| Table
Spo17268	0.67	Barchart \| Table
Spo18194	0.67	Barchart \| Table
Spo16070	0.66	Barchart \| Table
Spo12152	0.66	Barchart \| Table
Spo25445	0.66	Barchart \| Table
Spo11098	0.66	Barchart \| Table
Spo25881	0.66	Barchart \| Table
Spo00175	0.66	Barchart \| Table
Spo00615	0.66	Barchart \| Table
Spo18451	0.66	Barchart \| Table
Spo06030	0.66	Barchart \| Table
Spo23148	0.66	Barchart \| Table
Spo14438	0.66	Barchart \| Table
Spo14008	0.66	Barchart \| Table
Spo12394	0.66	Barchart \| Table
Spo01204	0.65	Barchart \| Table
Spo02731	0.65	Barchart \| Table
Spo17372	0.65	Barchart \| Table
Spo13179	0.65	Barchart \| Table
Spo01998	0.65	Barchart \| Table
Spo01357	0.65	Barchart \| Table
Spo24857	0.65	Barchart \| Table
Spo04057	0.65	Barchart \| Table
Spo03306	0.65	Barchart \| Table