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Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATAGACTTTATTTTTACAATAATCAAAGCAAAGAAAATATTGGGAAGCCATCAAAAGGGTGAGTCATGAATGATTTCACTACGAATGGGTCCTATTGGACCACCTTGTAAAAATATCTAGTGTCTATCTTTGCCAAAGATAAGCTTCCCTAACAGAAGAGTACACTACTCCAATTTCTATTGCCTTTGATGTGATCATATTGAATCTTCTCCTACACAAAGGGACCAAATTAAAAGCATTACAAGTTAACATAAAGGTCCACTCCCCCCACCCCAAATGGAGTAGCCTTGTAACACTAGAATTCCACACTAAAGTCCAATGAGAAACTTCTCTTCCCTTGATCAAAACCCCCATCAAATTCCCTAAAAGTTCTTAATATATGATCAAATAGTATCTCATATTTTTAATCAAAAGAGAAAAATAATGGATCTTGAAGAGTGGGATCTTCTCTCTGATGAAGGGTTTATTGATCTCCATGAAAAAAATAGTGGGGCAAACAAATTTTGCCCAAAATCAACTACAAGTGTAATTGACATGAATTATTTTGAGAAATTGAGTGAGCCGGAGAAGAAGAAGATGAAGAATTCAAGGGTTATTCCTGTTCCAATTCAGTTGGATCAATCAATTGGGGAAATCCCAGAAGAAGTAATCAAGTTACCAATTGATGATGATCAAACACCAAAATCTGATGAAGCTGATTTTGTGGAACCAGCTTCAAAAGTTTTCTTCAAGAAATTGAAGGAAAATGAATTTGTCGACATGAAAATGGACTCACCCAAGTCATTAAACAGGGGAATTTTGGCTCAAATTGATGTGGGTAGTTACCAATTTGAGAAAGTTGAAGAAAAAAAAGAGGGGGATAAAGATGAAGATGATAAAAAGAGTAATGAAGAAGGTTTGAAAGTTTGGAAATGGGCGATGACTGGAATTGGTGCTCTTTTCTCATTTGGTTTTGCTGCTGCTACTATTTCTTTTGTTGTTTTAGGTAACCGACACAAGGAAAGATGCAACTCTTCCAACAATCAGGAGCTTCACTTCCAGCTTTACGCTCATGACAAGGTAATTTTGCCTGCCTAGTTATCTTTTACCTGAATTCAGTAACAGCTCTTAAATCTTAATTATCACCGACTGTTTGTTCTTGAGTTTAATATGATTGATTAGCTTCTTATTATACCTTGATCTGAGACTTAAGGATATTGTTATATGTTGCGCATATGAATTTTCAATTTCTTTTTTGATAATGATTGTATGATACTAGTACAAGGGTCGGTCTGTTTGGCAACACTAGTTGAAATTGAGCTGAAACTGATAAGACAGCTGAAAGTGATAAACTAACTTATACCAAGTATTAATTTAAAAATTGAAAGTTGTAACATTTTGCTATTGATATGATCTTTCCCGTCAAAGAAATGAAAAGGGTGATGCAATATACAATAATTAGAAATTTTAATGTGTTTATAGACTAGAAATGAAGAAGTGTATTATTGAAATGATGTAAGTTATGTGGTTACAGAGATTGAAGCAAGTGGTTCGGCATGCCACAAAGCTAAATGAAGCCCTGAGTGTAATGAGAGGTGCACCGGTGACTCGAGCGCACATTACGATTGGGGGTTACCATGAAGGTCTTTAAAGAGGTTCTTCTTATAGTTATAATGTCTGTTACTGGAATCAGACGTACAGTATACTATAGTAATATAGTATAGCATAAACGTACTTTTACTACGAGTAATATTTTTCAATTTCTTAGTTATCTTTGAGCTTGATCAACTTATATTCCATATGAACATCTTGCTGCCTGTTTGTACATAGATAGACTTTATTTTTACAATAATCAAAGCAAAGAAAATATTGGGAAGCCATCAAAAGGGTGAGTCATGAATGATTTCACTACGAATGGGTCCTATTGGACCACCTTGTAAAAATATCTAGTGTCTATCTTTGCCAAAGATAAGCTTCCCTAACAGAAGAGTACACTACTCCAATTTCTATTGCCTTTGATGTGATCATATTGAATCTTCTCCTACACAAAGGGACCAAATTAAAAGCATTACAAGTTAACATAAAGGTCCACTCCCCCCACCCCAAATGGAGTAGCCTTGTAACACTAGAATTCCACACTAAAGTCCAATGAGAAACTTCTCTTCCCTTGATCAAAACCCCCATCAAATTCCCTAAAAGTTCTTAATATATGATCAAATAGTATCTCATATTTTTAATCAAAAGAGAAAAATAATGGATCTTGAAGAGTGGGATCTTCTCTCTGATGAAGGGTTTATTGATCTCCATGAAAAAAATAGTGGGGCAAACAAATTTTGCCCAAAATCAACTACAAGTGTAATTGACATGAATTATTTTGAGAAATTGAGTGAGCCGGAGAAGAAGAAGATGAAGAATTCAAGGGTTATTCCTGTTCCAATTCAGTTGGATCAATCAATTGGGGAAATCCCAGAAGAAGTAATCAAGTTACCAATTGATGATGATCAAACACCAAAATCTGATGAAGCTGATTTTGTGGAACCAGCTTCAAAAGTTTTCTTCAAGAAATTGAAGGAAAATGAATTTGTCGACATGAAAATGGACTCACCCAAGTCATTAAACAGGGGAATTTTGGCTCAAATTGATGTGGGTAGTTACCAATTTGAGAAAGTTGAAGAAAAAAAAGAGGGGGATAAAGATGAAGATGATAAAAAGAGTAATGAAGAAGGTTTGAAAGTTTGGAAATGGGCGATGACTGGAATTGGTGCTCTTTTCTCATTTGGTTTTGCTGCTGCTACTATTTCTTTTGTTGTTTTAGGTAACCGACACAAGGAAAGATGCAACTCTTCCAACAATCAGGAGCTTCACTTCCAGCTTTACGCTCATGACAAGAGATTGAAGCAAGTGGTTCGGCATGCCACAAAGCTAAATGAAGCCCTGAGTGTAATGAGAGGTGCACCGGTGACTCGAGCGCACATTACGATTGGGGGTTACCATGAAGTAATATTTTTCAATTTCTTAGTTATCTTTGAGCTTGATCAACTTATATTCCATATGAACATCTTGCTGCCTGTTTGTACATAG ATGGATCTTGAAGAGTGGGATCTTCTCTCTGATGAAGGGTTTATTGATCTCCATGAAAAAAATAGTGGGGCAAACAAATTTTGCCCAAAATCAACTACAAGTGTAATTGACATGAATTATTTTGAGAAATTGAGTGAGCCGGAGAAGAAGAAGATGAAGAATTCAAGGGTTATTCCTGTTCCAATTCAGTTGGATCAATCAATTGGGGAAATCCCAGAAGAAGTAATCAAGTTACCAATTGATGATGATCAAACACCAAAATCTGATGAAGCTGATTTTGTGGAACCAGCTTCAAAAGTTTTCTTCAAGAAATTGAAGGAAAATGAATTTGTCGACATGAAAATGGACTCACCCAAGTCATTAAACAGGGGAATTTTGGCTCAAATTGATGTGGGTAGTTACCAATTTGAGAAAGTTGAAGAAAAAAAAGAGGGGGATAAAGATGAAGATGATAAAAAGAGTAATGAAGAAGGTTTGAAAGTTTGGAAATGGGCGATGACTGGAATTGGTGCTCTTTTCTCATTTGGTTTTGCTGCTGCTACTATTTCTTTTGTTGTTTTAGGTAACCGACACAAGGAAAGATGCAACTCTTCCAACAATCAGGAGCTTCACTTCCAGCTTTACGCTCATGACAAGAGATTGAAGCAAGTGGTTCGGCATGCCACAAAGCTAAATGAAGCCCTGAGTGTAATGAGAGGTGCACCGGTGACTCGAGCGCACATTACGATTGGGGGTTACCATGAAGTAATATTTTTCAATTTCTTAGTTATCTTTGAGCTTGATCAACTTATATTCCATATGAACATCTTGCTGCCTGTTTGTACATAG MDLEEWDLLSDEGFIDLHEKNSGANKFCPKSTTSVIDMNYFEKLSEPEKKKMKNSRVIPVPIQLDQSIGEIPEEVIKLPIDDDQTPKSDEADFVEPASKVFFKKLKENEFVDMKMDSPKSLNRGILAQIDVGSYQFEKVEEKKEGDKDEDDKKSNEEGLKVWKWAMTGIGALFSFGFAAATISFVVLGNRHKERCNSSNNQELHFQLYAHDKRLKQVVRHATKLNEALSVMRGAPVTRAHITIGGYHEVIFFNFLVIFELDQLIFHMNILLPVCT Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo13479.1 vs. NCBI nr
Match: gi|902106673|gb|KNA03638.1| (hypothetical protein SOVF_207160 [Spinacia oleracea]) HSP 1 Score: 492.7 bits (1267), Expect = 4.300e-136 Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 1
BLAST of Spo13479.1 vs. NCBI nr
Match: gi|731364132|ref|XP_010693808.1| (PREDICTED: uncharacterized protein LOC104906713 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 313.5 bits (802), Expect = 3.600e-82 Identity = 178/276 (64.49%), Postives = 202/276 (73.19%), Query Frame = 1
BLAST of Spo13479.1 vs. NCBI nr
Match: gi|731364136|ref|XP_010693810.1| (PREDICTED: uncharacterized protein LOC104906713 isoform X3 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 249.6 bits (636), Expect = 6.300e-63 Identity = 146/240 (60.83%), Postives = 168/240 (70.00%), Query Frame = 1
BLAST of Spo13479.1 vs. NCBI nr
Match: gi|731364134|ref|XP_010693809.1| (PREDICTED: uncharacterized protein LOC104906713 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 249.6 bits (636), Expect = 6.300e-63 Identity = 146/240 (60.83%), Postives = 168/240 (70.00%), Query Frame = 1
BLAST of Spo13479.1 vs. NCBI nr
Match: gi|1012350916|gb|KYP62105.1| (hypothetical protein KK1_016629 [Cajanus cajan]) HSP 1 Score: 192.6 bits (488), Expect = 9.200e-46 Identity = 110/275 (40.00%), Postives = 168/275 (61.09%), Query Frame = 1
BLAST of Spo13479.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QAD4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_207160 PE=4 SV=1) HSP 1 Score: 492.7 bits (1267), Expect = 3.000e-136 Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 1
BLAST of Spo13479.1 vs. UniProtKB/TrEMBL
Match: A0A0J8E6D8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g068390 PE=4 SV=1) HSP 1 Score: 313.5 bits (802), Expect = 2.500e-82 Identity = 178/276 (64.49%), Postives = 202/276 (73.19%), Query Frame = 1
BLAST of Spo13479.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BCZ9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g068390 PE=4 SV=1) HSP 1 Score: 249.6 bits (636), Expect = 4.400e-63 Identity = 146/240 (60.83%), Postives = 168/240 (70.00%), Query Frame = 1
BLAST of Spo13479.1 vs. UniProtKB/TrEMBL
Match: A0A151T4Z9_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_016629 PE=4 SV=1) HSP 1 Score: 192.6 bits (488), Expect = 6.400e-46 Identity = 110/275 (40.00%), Postives = 168/275 (61.09%), Query Frame = 1
BLAST of Spo13479.1 vs. UniProtKB/TrEMBL
Match: B9SHF1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1120980 PE=4 SV=1) HSP 1 Score: 188.3 bits (477), Expect = 1.200e-44 Identity = 119/293 (40.61%), Postives = 166/293 (56.66%), Query Frame = 1
BLAST of Spo13479.1 vs. TAIR (Arabidopsis)
Match: AT5G18130.1 (unknown protein) HSP 1 Score: 120.9 bits (302), Expect = 1.200e-27 Identity = 102/290 (35.17%), Postives = 148/290 (51.03%), Query Frame = 1
BLAST of Spo13479.1 vs. TAIR (Arabidopsis)
Match: AT3G03870.2 (unknown protein) HSP 1 Score: 115.5 bits (288), Expect = 5.000e-26 Identity = 99/275 (36.00%), Postives = 143/275 (52.00%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo13479.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo13479.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo13479.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo13479.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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