Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGAGTAATAAATATTTGCCTATTTGGTTACCCCGTGCATGCAATATCTCCAGCTGTATCGCCCTTCCATAATTCGAACATTCCGCGCAACCTCAGCTTACTTAACCAGTCAACCCATACACTCGCTCTACCAACTTCACCAGCCGCCCCGTTACCATCCTTTTCCCAGTATAAATACACTTCTCCATTCATGCACATTACTCATAACACAAACTCACAAAAATCTATCTTAATTTCATTCAAACCAAGTAATATTTATTAGCTACATTTCAATATGGCAGTTTTTGCTCTTGTTAATGTACTCCTACTAGTCGTTACCTCTTTCATTGCCGTGGCGTCTGCTGCTGATAATTTTAACCAGGATTTCGATATCACTTGGGGTGACGGTCGTGCTAAGATACTAAACAATGGTCAGCTTCTTACCCTTTCTCTTGATAAGACCTCGGGTTCGGGCTTCCGGTCTAAGAACGAGTACCTCTTTGGGAAAATCGATTTGCAAATTAAGCTCGTTCCTGGGAACTCTGCGGGCACTGTCACTACCTACTATGTAAGTCCGGCCTCCCTCTTCTCTAATACTATCTCTGTTCCATAAATATGTTTACAGTTACTATTTGTATAAATATTAAGACTAAAATAAAAAATTTGGTAGAACATAACAATATGGATAAAATAAGATAGATAGGTAAAAAAAGTTTGGTGGGTGTAAGAAAAAATGAATAAAGTAAGATAAAGTGAGTGGAAAATTTTAAATATTATGGGGGTAAAAAGGATAAGTTGATAAATTTTCATGTCAATAAAATAGAACGAAACAGTAAGCGTAAAAATTATTTTGAAATAAAAGTAGTACAGATGATGACGTTGGTGACATATTGTGTAGTTCTGTTACAATTTTTGTAAGATTTTAAGATTCAAATTGCGATTTTAATAACCATGTTTGTTGTTATGTTACAGTTATCTTCTGAAGGAAAAAACCACGATGAGATAGACTTTGAATTCTTGGGTAATGTGACTGGCCAACCTTACACTCTTCACACTAACGTCTTCGCCAAAGGAAAAGGTGACCGGGAGCAACAGTTCCGCCTCTGGTTTGATCCCACTGCCGACTTCCATACTTATTCCATCCTTTGGAACCCCCAAAGAATCATGTAAGTTCATTCATCACCACCAATTCTAATCAACTAAGCAACTGAAGAATTAGGGCCGTAACTAGAGGTGTTAATGAGCCGAGCCGAGCCGATCTGAGACCGAGCCTTTACAAGCTCGACTCAAAACATTAAAACCGAGCTTGTCAAGCCTGGGAAACTGGCCTCGAGCTCGAAACATTAAAACCTGAGATCGGTTTGATTCGTTGAGGCTCAATAAGCTCGTTCGAGGTTGATCATAAAACGTTTAATTAAGAAACATGTTTATCAAAAATTTCACGTTTTATAGGTTAAAAATAAATATCTACTTAAAAATTAATTTATGCAATAGTTATTTTATAAAAATACATGTATTGTACACGAGCTTTCGAGTCGAGTCATTGATAGCTCAGGCTTGGCTCGTTAAGATCTCGAGCCGAACCTTAACGAGCCGAACTGAGCTCGAGTCAAGCTTTGACCAAGCTTAGCATTGAGTCAAGCTTAGCATCGAGTAGTTCGCGAGCAGGCTTAGCTCGTTAACACTCTAGCCTATTATCATTGTCCTTAAACTAATTATAGCCTACACTATTTCTTGCTTTGGGTTTCTGGCTGGTTAACTATCTCTAAACTTAATTTGTGTTTGATTTCAGATTCACAGTGGATGGTACACCCATTAGAGAATTCATGAACTGGGAATCAATTGGAGTCCCATTCCCAACGAACCAGGCAATGAGGGTCTACTCGACCCTATGGGACGCCGAGGACTGGGCCACCCAAGGCGGGCGGGTCAAGACAGACTGGGCCAAGGCTCCATTTACAGCTTCTTACAGGAACTTCAACGCCGACGCTTGTGTTTGGTCCAATGGTAAATCTTCTTGCCTCGGGTCGGGTCAGGCTCGGGCTTCTTCTCCATGGATGAACCAACAACTTGATTCCACAAGCCAGAAGAGGCTGCAATGGGTGCAGAAGAACTACATGATTTACAACTACTGCACTGATATTCAAAGGTTTCCTCAAGGTCTTCCTAAAGAGTGCTCTGCCACCAACTAATTAAGTTCTTATCAGTAATTATTATTTTTGGTAGGAAATGTTATTAAATTAAATTGATTTATATTCATTATTCATTGAAATAATAAAGAAATTTTATTACATTAGAAAATCAAGTTCTATTTATTTATTTATTTGCATTTTTTGTGTGCAAATGACTAGAACTCAGAAACGAAGGAGGGAAAATTCGAATATGTGACTTATTGTACATTTTTGTTATTACTTACATACTACTACTACAACAACA AGAGTAATAAATATTTGCCTATTTGGTTACCCCGTGCATGCAATATCTCCAGCTGTATCGCCCTTCCATAATTCGAACATTCCGCGCAACCTCAGCTTACTTAACCAGTCAACCCATACACTCGCTCTACCAACTTCACCAGCCGCCCCGTTACCATCCTTTTCCCAGTATAAATACACTTCTCCATTCATGCACATTACTCATAACACAAACTCACAAAAATCTATCTTAATTTCATTCAAACCAAGTAATATTTATTAGCTACATTTCAATATGGCAGTTTTTGCTCTTGTTAATGTACTCCTACTAGTCGTTACCTCTTTCATTGCCGTGGCGTCTGCTGCTGATAATTTTAACCAGGATTTCGATATCACTTGGGGTGACGGTCGTGCTAAGATACTAAACAATGGTCAGCTTCTTACCCTTTCTCTTGATAAGACCTCGGGTTCGGGCTTCCGGTCTAAGAACGAGTACCTCTTTGGGAAAATCGATTTGCAAATTAAGCTCGTTCCTGGGAACTCTGCGGGCACTGTCACTACCTACTATTTATCTTCTGAAGGAAAAAACCACGATGAGATAGACTTTGAATTCTTGGGTAATGTGACTGGCCAACCTTACACTCTTCACACTAACGTCTTCGCCAAAGGAAAAGGTGACCGGGAGCAACAGTTCCGCCTCTGGTTTGATCCCACTGCCGACTTCCATACTTATTCCATCCTTTGGAACCCCCAAAGAATCATATTCACAGTGGATGGTACACCCATTAGAGAATTCATGAACTGGGAATCAATTGGAGTCCCATTCCCAACGAACCAGGCAATGAGGGTCTACTCGACCCTATGGGACGCCGAGGACTGGGCCACCCAAGGCGGGCGGGTCAAGACAGACTGGGCCAAGGCTCCATTTACAGCTTCTTACAGGAACTTCAACGCCGACGCTTGTGTTTGGTCCAATGGTAAATCTTCTTGCCTCGGGTCGGGTCAGGCTCGGGCTTCTTCTCCATGGATGAACCAACAACTTGATTCCACAAGCCAGAAGAGGCTGCAATGGGTGCAGAAGAACTACATGATTTACAACTACTGCACTGATATTCAAAGGTTTCCTCAAGGTCTTCCTAAAGAGTGCTCTGCCACCAACTAATTAAGTTCTTATCAGTAATTATTATTTTTGGTAGGAAATGTTATTAAATTAAATTGATTTATATTCATTATTCATTGAAATAATAAAGAAATTTTATTACATTAGAAAATCAAGTTCTATTTATTTATTTATTTGCATTTTTTGTGTGCAAATGACTAGAACTCAGAAACGAAGGAGGGAAAATTCGAATATGTGACTTATTGTACATTTTTGTTATTACTTACATACTACTACTACAACAACA ATGGCAGTTTTTGCTCTTGTTAATGTACTCCTACTAGTCGTTACCTCTTTCATTGCCGTGGCGTCTGCTGCTGATAATTTTAACCAGGATTTCGATATCACTTGGGGTGACGGTCGTGCTAAGATACTAAACAATGGTCAGCTTCTTACCCTTTCTCTTGATAAGACCTCGGGTTCGGGCTTCCGGTCTAAGAACGAGTACCTCTTTGGGAAAATCGATTTGCAAATTAAGCTCGTTCCTGGGAACTCTGCGGGCACTGTCACTACCTACTATTTATCTTCTGAAGGAAAAAACCACGATGAGATAGACTTTGAATTCTTGGGTAATGTGACTGGCCAACCTTACACTCTTCACACTAACGTCTTCGCCAAAGGAAAAGGTGACCGGGAGCAACAGTTCCGCCTCTGGTTTGATCCCACTGCCGACTTCCATACTTATTCCATCCTTTGGAACCCCCAAAGAATCATATTCACAGTGGATGGTACACCCATTAGAGAATTCATGAACTGGGAATCAATTGGAGTCCCATTCCCAACGAACCAGGCAATGAGGGTCTACTCGACCCTATGGGACGCCGAGGACTGGGCCACCCAAGGCGGGCGGGTCAAGACAGACTGGGCCAAGGCTCCATTTACAGCTTCTTACAGGAACTTCAACGCCGACGCTTGTGTTTGGTCCAATGGTAAATCTTCTTGCCTCGGGTCGGGTCAGGCTCGGGCTTCTTCTCCATGGATGAACCAACAACTTGATTCCACAAGCCAGAAGAGGCTGCAATGGGTGCAGAAGAACTACATGATTTACAACTACTGCACTGATATTCAAAGGTTTCCTCAAGGTCTTCCTAAAGAGTGCTCTGCCACCAACTAA MAVFALVNVLLLVVTSFIAVASAADNFNQDFDITWGDGRAKILNNGQLLTLSLDKTSGSGFRSKNEYLFGKIDLQIKLVPGNSAGTVTTYYLSSEGKNHDEIDFEFLGNVTGQPYTLHTNVFAKGKGDREQQFRLWFDPTADFHTYSILWNPQRIIFTVDGTPIREFMNWESIGVPFPTNQAMRVYSTLWDAEDWATQGGRVKTDWAKAPFTASYRNFNADACVWSNGKSSCLGSGQARASSPWMNQQLDSTSQKRLQWVQKNYMIYNYCTDIQRFPQGLPKECSATN Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo13620.1 vs. NCBI nr
Match: gi|902231140|gb|KNA22131.1| (hypothetical protein SOVF_036570 [Spinacia oleracea]) HSP 1 Score: 597.4 bits (1539), Expect = 1.300e-167 Identity = 287/288 (99.65%), Postives = 287/288 (99.65%), Query Frame = 1
BLAST of Spo13620.1 vs. NCBI nr
Match: gi|731377871|ref|XP_010668001.1| (PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 500.7 bits (1288), Expect = 1.700e-138 Identity = 235/282 (83.33%), Postives = 256/282 (90.78%), Query Frame = 1
BLAST of Spo13620.1 vs. NCBI nr
Match: gi|731377862|ref|XP_010667998.1| (PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 487.6 bits (1254), Expect = 1.400e-134 Identity = 228/283 (80.57%), Postives = 251/283 (88.69%), Query Frame = 1
BLAST of Spo13620.1 vs. NCBI nr
Match: gi|731319555|ref|XP_010670334.1| (PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 476.5 bits (1225), Expect = 3.300e-131 Identity = 220/276 (79.71%), Postives = 247/276 (89.49%), Query Frame = 1
BLAST of Spo13620.1 vs. NCBI nr
Match: gi|902231141|gb|KNA22132.1| (hypothetical protein SOVF_036580 [Spinacia oleracea]) HSP 1 Score: 475.7 bits (1223), Expect = 5.700e-131 Identity = 223/284 (78.52%), Postives = 250/284 (88.03%), Query Frame = 1
BLAST of Spo13620.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RRH7_SPIOL (Xyloglucan endotransglucosylase/hydrolase OS=Spinacia oleracea GN=SOVF_036570 PE=3 SV=1) HSP 1 Score: 597.4 bits (1539), Expect = 9.000e-168 Identity = 287/288 (99.65%), Postives = 287/288 (99.65%), Query Frame = 1
BLAST of Spo13620.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B1X1_BETVU (Xyloglucan endotransglucosylase/hydrolase OS=Beta vulgaris subsp. vulgaris GN=BVRB_013510 PE=3 SV=1) HSP 1 Score: 500.7 bits (1288), Expect = 1.200e-138 Identity = 235/282 (83.33%), Postives = 256/282 (90.78%), Query Frame = 1
BLAST of Spo13620.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B1S3_BETVU (Xyloglucan endotransglucosylase/hydrolase OS=Beta vulgaris subsp. vulgaris GN=BVRB_013490 PE=3 SV=1) HSP 1 Score: 487.6 bits (1254), Expect = 1.000e-134 Identity = 228/283 (80.57%), Postives = 251/283 (88.69%), Query Frame = 1
BLAST of Spo13620.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CU54_BETVU (Xyloglucan endotransglucosylase/hydrolase OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g040540 PE=3 SV=1) HSP 1 Score: 476.5 bits (1225), Expect = 2.300e-131 Identity = 220/276 (79.71%), Postives = 247/276 (89.49%), Query Frame = 1
BLAST of Spo13620.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RTK3_SPIOL (Xyloglucan endotransglucosylase/hydrolase OS=Spinacia oleracea GN=SOVF_036580 PE=3 SV=1) HSP 1 Score: 475.7 bits (1223), Expect = 4.000e-131 Identity = 223/284 (78.52%), Postives = 250/284 (88.03%), Query Frame = 1
BLAST of Spo13620.1 vs. ExPASy Swiss-Prot
Match: XTH22_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1) HSP 1 Score: 431.4 bits (1108), Expect = 7.700e-120 Identity = 197/281 (70.11%), Postives = 237/281 (84.34%), Query Frame = 1
BLAST of Spo13620.1 vs. ExPASy Swiss-Prot
Match: XTH23_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1) HSP 1 Score: 423.3 bits (1087), Expect = 2.100e-117 Identity = 196/286 (68.53%), Postives = 236/286 (82.52%), Query Frame = 1
BLAST of Spo13620.1 vs. ExPASy Swiss-Prot
Match: XTH24_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana GN=XTH24 PE=1 SV=2) HSP 1 Score: 397.9 bits (1021), Expect = 9.400e-110 Identity = 191/288 (66.32%), Postives = 228/288 (79.17%), Query Frame = 1
BLAST of Spo13620.1 vs. ExPASy Swiss-Prot
Match: XTH25_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2) HSP 1 Score: 394.0 bits (1011), Expect = 1.400e-108 Identity = 181/275 (65.82%), Postives = 220/275 (80.00%), Query Frame = 1
BLAST of Spo13620.1 vs. ExPASy Swiss-Prot
Match: XTH20_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 20 OS=Arabidopsis thaliana GN=XTH20 PE=2 SV=1) HSP 1 Score: 391.0 bits (1003), Expect = 1.200e-107 Identity = 175/263 (66.54%), Postives = 212/263 (80.61%), Query Frame = 1
BLAST of Spo13620.1 vs. TAIR (Arabidopsis)
Match: AT5G57560.1 (Xyloglucan endotransglucosylase/hydrolase family protein) HSP 1 Score: 431.4 bits (1108), Expect = 4.300e-121 Identity = 197/281 (70.11%), Postives = 237/281 (84.34%), Query Frame = 1
BLAST of Spo13620.1 vs. TAIR (Arabidopsis)
Match: AT4G25810.1 (xyloglucan endotransglycosylase 6) HSP 1 Score: 423.3 bits (1087), Expect = 1.200e-118 Identity = 196/286 (68.53%), Postives = 236/286 (82.52%), Query Frame = 1
BLAST of Spo13620.1 vs. TAIR (Arabidopsis)
Match: AT4G30270.1 (xyloglucan endotransglucosylase/hydrolase 24) HSP 1 Score: 397.9 bits (1021), Expect = 5.300e-111 Identity = 191/288 (66.32%), Postives = 228/288 (79.17%), Query Frame = 1
BLAST of Spo13620.1 vs. TAIR (Arabidopsis)
Match: AT5G57550.1 (xyloglucan endotransglucosylase/hydrolase 25) HSP 1 Score: 394.0 bits (1011), Expect = 7.700e-110 Identity = 181/275 (65.82%), Postives = 220/275 (80.00%), Query Frame = 1
BLAST of Spo13620.1 vs. TAIR (Arabidopsis)
Match: AT5G48070.1 (xyloglucan endotransglucosylase/hydrolase 20) HSP 1 Score: 391.0 bits (1003), Expect = 6.500e-109 Identity = 175/263 (66.54%), Postives = 212/263 (80.61%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo13620.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo13620.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo13620.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo13620.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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