Spo13719 (gene) | SpinachBase

Overview


Name	Spo13719
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_00277 : 300738 .. 305638 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAGAAAAACAATTGCGAACTAGTACTCCGTAAACAAGTTTTGTTTAAATCCAGCCTTGTGTTTGCAAAAAGCTTGACTCGTTCTCTCTCTCTGAAAACCCTAAACCCTAAAACACAACCACAAACAAATCAACAATGGCAGAACTCCCGATCTCAGTCGACAGCCTTAAGAGATTCTGGAATGCTCAGGTTCACGACCCTAACAAGTGGGCTTTTAACATGGTAATCTATCGATTTCTTAAACCCTAATTTTTGTTTTCCCTCTTTCAATTTTCTTTGAATTCATCGTTAACTTTGTGCGTTTGTGTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTGTAAAATCCAGTTTATATGATTTCTGGGTTGATGTATTAGATGATTGTGTTGATTTATTTATTTTGATTAAAATCATATACTCTAGAAAGTGTTGCCCCATTGGAGGGAAATAATTTGGCTGATTACAATTAAGTTAGAATTAGGCTTTGAAGTGTTGCTGAAGCCTGAAGGTTCAGTGTATATGAGCTGGATGAGCGTTAGCTACTTAGCTAGTTAGTTTAGTTTATTGTGAGTATACGTTTATCTCTAGCTGCTCTTTAGTGAAGAAGGACCGACCCGTCTCTTCTATCAATTTCGTATTCCAATGAAGCTATATGTTCTCTTGTATCACGTTGCTATAACGTTTTTTTTTCAGACGCTTCCTTGTGTGACTGTGTCATACATAATCACTTTTGTGATGAGGCACTAGTTTTCGTTAGATTATGTTCAAGTGGTTGTTTAAATGAGCCTTTCCTGTTAAAATCTGCTAAATGTTTAGCAATTTGGTTGTAGGAGGCGATTCTGATTGGTTTACATAGCAAACATTTGAAGCATGTAATTATGTACTGCTGTTTCCGTTATCTATGAAGCACTATGTATGTGAGAATTGTTTTTTATGTTTAGACTTGTGTAGTGTGTACCATTGTTGGATTTTTGAAGGAGAATTATTTCAAATGAATGAATATTTCATTTTGAAACTGAAAGATTCTCCCCTTTTTCATTACTACAGATTATTGACTTTGTGTGATTACACCAGCACAGTCTTATATCAAATCCATTTTCCACTAATTTGCCTACCTCACCCTTCCACCTTGCCTAATGTATATCGTGAGAAGCAATAGTGAGTATAATAGTGAAAAAGACATATGACTTCCAAATTACTGCACCATTCTGCTTTTTGTATAATGTTATAAAGAAACTGTCAGTTCCGTTTATAGTGAATGTAGGACATTATTAGAAGTGTAGGCTTTTATTCATTTGAAGCCAAAATGTATGAAATTATAATATGAACAGATTGAAACTCTGATTCCAAAGATGATCACTTATCAGAAATGGGAGTTCATGGTCACGCTAGCATCTTTGATGTTGGACTATTCGATCTTTCCTAGAGAGAGGGGTTCTCCCTTTTCTTCTAGAAAGGGATCCTTAAAATCCCTAGATCTTAGCTACCCCAACTCTTCCAAGACATCTCTTCTTATGCCCCCTCCCCTCCTCCTCTGCGGCTCTGCCGCTAGGCCTTTGTGTTGCTCTTTGGCTTTGGTTCTACCCATCCAGTAGCCAATGCTTTGTTGGCCGTGTTGGGAATTTGATATTCACCTCTACCCATTGGCCTATTGGGTTCTGTTTTTCATGTTAGATTGTTGTGTTCTTGGTGGCTCACCTCATACTGTATCGCCCTATTATGAATCTCTATTTTCTCGTTGTTTCTCAGGGTTGTAGACTAGTTTTTTTCTTTTCTTTTTTGATTGGAGGTTGGAGACTAGTTTGTTATCTTTGTTTGTTCACTTCTTGATCTTTAGTTAGGTTTTTAGTTTAAGCTTTAGAATCCTATGGTGGTTGTTTTGGGTCTTGAGGGATTGTTCTTGTTACAAATCTGGCTGTTGCCTAAAGTACTTGTCCTGCTAATGTTTTCTGATGTTTCATAAATTTTACATGCTTGTATAAATATTGCAGACACTCTTGAGTCTTGATTGTTTAGGAATGTAGGAAGTTAATCAGGGTTTGTCTTTTAGGATACCCCTATTTTTTATACGAGTATTGTAGATGAGTGATTTATACTATATCTTTCTTGTTTCTCATTCTGGGTCTGTTATTGGCAGAAATTTTTGCGAGCTGCTGGAATGTTTGCTGGCTCAGTCATTTTTATCCGAAACTTTGGAGAAAGCGTTGCTCTTTAAGTCTGGATGATGGGATTTGTTATTTGTAGCGCGCTGAAATGTTCTATTTCTACTATTCATTTCAGTATCTTAGTAAAGCTCACGCTCTTTGTATGCTGAGATTTTACTTTCAGTTAGTAAAGCTCAGTCTCTCTAGTTTTGGCATAGGAAGCATAGAAGCTGTTCTAAAAGTTCTATTATAATGGTTTGAACTTCGAATAAAATGTAGTTTTGGCATAGGAAGCATAGAAGCTGTTCTAAAAGTTCTATTATAATGATTTTGGTTTTACACTTTTTTTTGTTCTAAGAATCAACTCAATGAAATAACTTTGGTCCTTGTTTTTCCTCTCCAAAGTCGATTTGATGGCTGCAAACTCGAAAATTTGTAAGTTCTTATGCGCATAACCGGAGTTTCAGTAGGATTTTGAATTGTTTTCTGTAATTTATCTAACAATACTACAAAAGGTTGACTGTATAAATGTGGAACTCTATCAATTTTCTCTAGAAATAATAAGAATTAGTTCAACAAAATTCAAATAATACGATCTTTTAATTACATCATCCACTTGTATAGTTCTAACATAACATCGTCGTGCTTTAGAGTAGTCATTTTAGAAACGAAGCCTATAGCGAGAATCAAAAGCAGAAAAATCATTATATTGACCAAAATGTTCTTTCAATCTCTATCTTGATCAAGTATAGTGAAGAAAGTAGGTGTTGGGTATTTTATAGGAGCAATTGTTTAAGCAAAATCATCAAAAGTGCTGAAATTGTTAGAATTAAGAACTACATGTTACATATATATATACACAGGCCATCAAATTTTGGGTTTCTTTATCATGTTTACCAGTAATCTCCACAAGAGCAGCTCCCATCTTTGAAATGGTGAAACCTTGTATTATCTCTAACAATTATTTCCCTCCCTTCTATGGCCGATATGAACTTCAATGCTCGATGACAATCCCCGCACACTCTCAGATTCTTAAAAACCCGAATAGGCAATCCTCTTGGCACCTTAATCAACCCATAAGCAACTGCCAATTTCTCACCATGCCATAACAGTAGTTTCTGTTTCTGCTCAGCACCAATATCATGCAGTGCGAATTCAAAATCAGGCACATACCCTGCTAACTTCATCTTCCCCTCTAGTTCATCAAGCTTTTCATGAATCACAGGCAATTCTGGGTGTACTCTATCACTCGACCTAAATTCATGAACTATATTCTTTATCTCAATCCAACTGTAACCTGGCATTTTCACTACATTATTACTCTTCATGGATTTCCAAACCCTAGAAACATTGTCCCATCTCTTTTTAGCAGCATAAACATTAGCTAGTTGGACATATGCTCCTGCATTTGTTGGATCAACCTGAAGCAAATTGTTTGCAGCAAACTCAGCCAACTCTATGTTCTTGTGGATTCTAGAAGCTCCCAAAAGACTCCCAAATATTGCAGCATTTGGTTTGAAGGGCATTTGTGTAATTAAGTCGGTAGCTTCTTTAAGCTTACCAGCACGGCCTAGGAGGTCAACCATGCATATGTAGTGCTCTAGTTTAGGTCTAACCCCGTAAACTTTATGCATTGAATCGAAATATTGCATCCCGAGATCTACTAGTCCAACATGATTGCAAGCTGATAAAACTGCAACAAAAGTGATCCAATCTGGCTTTATTTTTTCACTTGCCATCTTTTTGAACAGAGCAAGGGATCTCTGACTTAAACCATGAGTAGCATACCCTGAAATCATGGCGTTCCAAGTAACCATATCTTTCATAGGCATCTCTGTAAACAACTTCCACGCGTCCTCTAAAACTCCACATTTGCTATACATACTCAACAATGACGTCCGAACTGTAGTATCCCTGTAAAATGGAGACTTGTATACAAATTGATGAATTTGCTTCCCCAAGATTAAAGCTGATAAATTGCTACAACCCAACAAAACACTGGTCATGGTTAATGGGTTTGGTTCAACCCTGGATTCCACCATCATCTTGAAGAGATTGACAGCATCTTCTTGTCGAGAATTTGCAACATATCCAGAAATCATAGCATTACATGTAATTGAACTCTTCATATCCATTTCTTCATACATTCTCTCAGCCAGTTCAACCATACCAATTTTCATATACCCAGTTATCAATGCAGTCCGAGCTACCACACTCTTAAACGGATCAATCCTAAACAGCCTCATAGCTGAATCCAGATCCCCACACTCTGCATACCCCGATATCATCACATTCCACGACACACTATTCCTCTCCGGCATTGCTGTAAACAGCCTCTCAGTTTCCTCCATCAACCCATTTTCAGCAAAACCCGAAACCATGGTATTCCAAGAAGCAATATCCTTAACAGGCATTTTCTCAAAAAACAATCTAGCACCATCAACATCCGAATTACGCAAATAA

mRNA sequence

AAAAAAGAAAAACAATTGCGAACTAGTACTCCGTAAACAAGTTTTGTTTAAATCCAGCCTTGTGTTTGCAAAAAGCTTGACTCGTTCTCTCTCTCTGAAAACCCTAAACCCTAAAACACAACCACAAACAAATCAACAATGGCAGAACTCCCGATCTCAGTCGACAGCCTTAAGAGATTCTGGAATGCTCAGGTTCACGACCCTAACAAGTGGGCTTTTAACATGATTGAAACTCTGATTCCAAAGATGATCACTTATCAGAAATGGGAGTTCATGGTCACGCTAGCATCTTTGATGTTGGACTATTCGATCTTTCCTAGAGAGAGGGGTTCTCCCTTTTCTTCTAGAAAGGGATCCTTAAAATCCCTAGATCTTAGCTACCCCAACTCTTCCAAGACATCTCTTCTTATGCCCCCTCCCCTCCTCCTCTGCGGCTCTGCCGCTAGGCCTTTGTGTTGCTCTTTGGCTTTGATTAAAGCTGATAAATTGCTACAACCCAACAAAACACTGGTCATGGTTAATGGGTTTGGTTCAACCCTGGATTCCACCATCATCTTGAAGAGATTGACAGCATCTTCTTGTCGAGAATTTGCAACATATCCAGAAATCATAGCATTACATGTAATTGAACTCTTCATATCCATTTCTTCATACATTCTCTCAGCCAGTTCAACCATACCAATTTTCATATACCCAGTTATCAATGCAGTCCGAGCTACCACACTCTTAAACGGATCAATCCTAAACAGCCTCATAGCTGAATCCAGATCCCCACACTCTGCATACCCCGATATCATCACATTCCACGACACACTATTCCTCTCCGGCATTGCTGTAAACAGCCTCTCAGTTTCCTCCATCAACCCATTTTCAGCAAAACCCGAAACCATGGTATTCCAAGAAGCAATATCCTTAACAGGCATTTTCTCAAAAAACAATCTAGCACCATCAACATCCGAATTACGCAAATAA

Coding sequence (CDS)

ATGGCAGAACTCCCGATCTCAGTCGACAGCCTTAAGAGATTCTGGAATGCTCAGGTTCACGACCCTAACAAGTGGGCTTTTAACATGATTGAAACTCTGATTCCAAAGATGATCACTTATCAGAAATGGGAGTTCATGGTCACGCTAGCATCTTTGATGTTGGACTATTCGATCTTTCCTAGAGAGAGGGGTTCTCCCTTTTCTTCTAGAAAGGGATCCTTAAAATCCCTAGATCTTAGCTACCCCAACTCTTCCAAGACATCTCTTCTTATGCCCCCTCCCCTCCTCCTCTGCGGCTCTGCCGCTAGGCCTTTGTGTTGCTCTTTGGCTTTGATTAAAGCTGATAAATTGCTACAACCCAACAAAACACTGGTCATGGTTAATGGGTTTGGTTCAACCCTGGATTCCACCATCATCTTGAAGAGATTGACAGCATCTTCTTGTCGAGAATTTGCAACATATCCAGAAATCATAGCATTACATGTAATTGAACTCTTCATATCCATTTCTTCATACATTCTCTCAGCCAGTTCAACCATACCAATTTTCATATACCCAGTTATCAATGCAGTCCGAGCTACCACACTCTTAAACGGATCAATCCTAAACAGCCTCATAGCTGAATCCAGATCCCCACACTCTGCATACCCCGATATCATCACATTCCACGACACACTATTCCTCTCCGGCATTGCTGTAAACAGCCTCTCAGTTTCCTCCATCAACCCATTTTCAGCAAAACCCGAAACCATGGTATTCCAAGAAGCAATATCCTTAACAGGCATTTTCTCAAAAAACAATCTAGCACCATCAACATCCGAATTACGCAAATAA

Protein sequence

MAELPISVDSLKRFWNAQVHDPNKWAFNMIETLIPKMITYQKWEFMVTLASLMLDYSIFPRERGSPFSSRKGSLKSLDLSYPNSSKTSLLMPPPLLLCGSAARPLCCSLALIKADKLLQPNKTLVMVNGFGSTLDSTIILKRLTASSCREFATYPEIIALHVIELFISISSYILSASSTIPIFIYPVINAVRATTLLNGSILNSLIAESRSPHSAYPDIITFHDTLFLSGIAVNSLSVSSINPFSAKPETMVFQEAISLTGIFSKNNLAPSTSELRK

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo13719.1	Spo13719.1	mRNA

Homology

[Close]

BLAST of Spo13719.1 vs. NCBI nr
Match: gi|902230681|gb|KNA21950.1| (hypothetical protein SOVF_038200 [Spinacia oleracea])

HSP 1 Score: 68.2 bits (165), Expect = 2.600e-8
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1

		  
Query: 1  MAELPISVDSLKRFWNAQVHDPNKWAFNM 30
          MAELPISVDSLKRFWNAQVHDPNKWAFNM
Sbjct: 1  MAELPISVDSLKRFWNAQVHDPNKWAFNM 29

[Close]

BLAST of Spo13719.1 vs. UniProtKB/TrEMBL
Match: A0A0E0HY21_ORYNI (Uncharacterized protein OS=Oryza nivara PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.700e-9
Identity = 51/139 (36.69%), Postives = 71/139 (51.08%), Query Frame = 1

		  
Query: 138 IILKRLTASSCREFATYPEIIALHVIELFISISSYILSASSTIPIFIYPVINAV-RATTL 197
           ++L  L ASS  EF TYP     H  +    I+S      + + I +YP   AV R  + 
Sbjct: 1   MVLNSLKASSACEFFTYPATTPFHETKFLTGIASKYSMPFTALSISMYPDTIAVHRTVSP 60

Query: 198 LNGSILNSLIAESRSPHSAYPDIITFHDTLFLSGIAVNSLSVSSINPFSAKPETMVFQEA 257
            + + LN   A   SP  A  + + F +T FL+GIA N+   SS  P    P+TMVFQ+ 
Sbjct: 61  FSSAFLNHSSAVLMSPEQANLETMAFQETEFLTGIARNTALASSTAPLFDSPDTMVFQDM 120

Query: 258 ISLTGIFSKNNLAPSTSEL 276
            S+T I +K+  APS S L
Sbjct: 121 TSMTRIDAKSLRAPSASPL 139

[Close]

BLAST of Spo13719.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQY3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_038200 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.800e-8
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1

		  
Query: 1  MAELPISVDSLKRFWNAQVHDPNKWAFNM 30
          MAELPISVDSLKRFWNAQVHDPNKWAFNM
Sbjct: 1  MAELPISVDSLKRFWNAQVHDPNKWAFNM 29

The following BLAST results are available for this feature:

BLAST of Spo13719.1 vs. NCBI nr
BLAST of Spo13719.1 vs. UniProtKB/TrEMBL
BLAST of Spo13719.1 vs. ExPASy Swiss-Prot
BLAST of Spo13719.1 vs. TAIR (Arabidopsis)

BLAST of Spo13719.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902230681\|gb\|KNA21950.1\|	2.6e-8	100.	hypothetical protein SOVF_0382...	[more]

BLAST of Spo13719.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0E0HY21_ORYNI	1.7e-9	36.6	Uncharacterized protein OS=Ory...	[more]
A0A0K9RQY3_SPIOL	1.8e-8	100.	Uncharacterized protein OS=Spi...	[more]

BLAST of Spo13719.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo13719.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0045036	protein targeting to chloroplast
biological_process	GO:0010103	stomatal complex morphogenesis
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005515	protein binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo14469	0.71	Barchart \| Table
Spo02964	0.70	Barchart \| Table
Spo19939	0.68	Barchart \| Table
Spo22999	0.67	Barchart \| Table
Spo18478	0.66	Barchart \| Table
Spo15841	0.65	Barchart \| Table
Spo21808	0.65	Barchart \| Table
Spo03108	0.65	Barchart \| Table