Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTGGTGCTACCCCATTTTCGCCATTAAGCACTATCTTCAGCTTATTGTCAACACCTTCCTTCGTCTTTCTCTCTCCTCTTCCTCAATCTGTAAGAACTTTTATCTCATTATTTCATGTTTTTTTGTTTTATTCTTATTATTATCTTCTAATTTTGATTAATAAGTACGGTATATTAATTGTATGTTTGTAATTTCTTATGATATTCTTCCTACTTTTTGTGACATGGATAAGAAGAAGATAAATTTCGTATTAATTTATCTTCTCATAAATAATTATACATTTATACTTATAGGTGATGAGGGCGAACCCCACAAGTCTGTATATGATGGACGTGTAATTTTGTCATAAATAAAAAAATTAGTACCACTTTAATGTTGATAGGTTTACTTAGGTGCTTATTACTCATTTGGTAGCCGGTAATAAATGATATAAATGGTAATAATCTAACAAGAAAAATAACATCGTAATGTTAATGGTAATGAAACTTTATCTTAAACTTGTTGTTTTTCTTCATAAATTCGAATGTTCACCTAATACCACTACCCAAACGGTAATGGATGATCATGAAAATTTATGAAGAAAAAATAGCTATTTTTGAATTAATTTGCATTATCATGGGAATGCATATTGATTTTCCTTACAAATTTACGTATAAATTAATTCTCATTGACATCATTTATGATTGTCTATCAAACAGACCGTTACGAGTTAAATACAAAATCTATTATTTCCTTATTTTTATTTTAGACCGAAAGGAGGGGGTATATAATATAATAACACAGGGAAAAGGGAGAACTTTCTAGATGTACCAAACAAATTAAGGTGTCGTTTGGTTCAAACTAGATTAAATCCCGTGCACGCACGGATTTTGGTAATTTTTTTCACAAAATATTTAACTGAATATCTCACAAACTACTTCATAGTTATAACATTTTTAACATACTCGTTTAAATTTATTCATATAATATGCATATTTAAATGCTAATATGATAATTTCACCAAAATATTGAGTGATATATTTTTCATTATTAATATAGCAAATTGACTAAAATATCAACAATTTAGAATAATTATTATTACGCCGTATATATTATTGGCATAATTTATAAACTAAATTTTATTTCTATACATAAATAGTTTTTTTAAATAAGGTAGAATAAATATAAAATTAAACAGATACACTTTTTTTGGGAAAGTGATTTTGGCGGGAAAAAATCGCACCAGGAATTGACACGTGTCATTCCTGGTGTCTCTTTTAGTATATAGTAATAGATAGGAAGTAGAATTTTCTATGAAATGCAAATACATAGGAAATGAGTTCCTTAATTAAATTCATGGGAACTTGTTAGAGTTGTTTGGTTAATAATGTGGGAAGTAACTTCCCATGGGAATTTCTACTTACCTAGAGGGAACTAGGTAATCAAATTCCCCCATTTTGTGGGAAGTTGAAATTCCCATGAATTTTCACTTCCCACATTTCATCAAAATATTGTCAACCAAACAACTCACATAGTTTGTAATTCATAGGAATTCTAAATTCCCATGTTTTTGTATGTCAACCAAACAACACCTAAGAGTATAAAAAAAGTAAGGAGTAATGAAAAAATGGGTTGATTATACGTATTCCCTCCGTATCTTTAATTATACATTAGAAAAAATTATAAAATTTGATGTGATTAAAGTATTAATTGAAACGAATCAAACAAGACCCCGACTGAATATGTTTTTCTCTCATGTATTGCAAATAATTCATAACATTCTTTTCAATTGTGAATAGTGTCAAAATTATAAATTGTAACATCATTATGGAGCGGATAGAGTAATTAGTACTCCGTATTAATCATCATAATGTACAGCAGTGTTGAAAAATCATGACATGACTTGAATGATAGAGAGATTTGTTTATACTTTCGGGTTTTATTAATATTATTAGCTAAAATTGGCTTGTGAGTTGTGATGAAGTGGAGCTGAGTTGTATTCTAGGCTAAACTTGTGTTAATTTGATGAAAGTATTCTCGAGTTAAAATGTCTTAAGTTTTACCGTTAAATAGATATTCTACTACGGAGTAGTATGTTATTTTTGTTGCTGTGTGAATGACTAATAATTAGTTGAAATTTTGCTGTGTTTTAGGAGAATTACATAAATCTATTACAATGGGAAACTTGTTATGCTGCGTTCAAATTGACCAGTCCACGGTTGCCATTAAGGAGAGCTTTGGGAAATATGATGATGTGCTTGAACCAGGGTGCCATTGTGTCCCCTGGTTCATTGGTCAGCAGATAGCAGGCAAGCTTAGTCTTCGTGTACAACAGTTGGATGTACGCTGTGAGACCAAGACCAAGGTCTGTCTGTTTCCTCATATTCTTTGTATAATATGTCAGTTAATTAGTTTACAAGTTTAATATGTTATCTTTCTATGTTTCTCTTTTGTGACCTGCTTGTGAATGTGCAGGACAATGTGTTTGTCAATGTTGTTGCATCCATTCAATATCGTGCCCTTGCTGAGAAGGCAAATGATGCATTTTACAAGCTCAGCAACACTCGTTCCCAAATTCAGGCCTATGTTTTCGATGGTAAATATGAACGACAATGTAATAAAATGTTGTAGCTTCTATGTTCGTATATCTCATATCCTTGCTGGTTTTTATAGTGATCAGAGGCACTGTTCCAAGGCTCAATGTGGATGATGTGTTTGAGCAGAAGAGTGAAATTGCCAAAGCAGTTGCTGATGAACTCGAAAAAGTAAGTTCATACATATATATGTAGTCTAAATTCCTGTATATATATATATATATATATTTGGTGAGATTTTATGGTCATAACTATTTTCAGGCAATGTCTCACTATGGGTTTGAGATAGTTCAAACGCTGATTGTTGATATTGAACCTGATGAACATGTGAAGCGTGCCATGAATGAAATCAATGCTGGTAAGACGTACATTCTTTAATGTCTGCTCTTTGTTACCTCATAAGAATTTAGGTTAATTGATCCGGCCATTATGTATGTTATGTCAGCTGCAAGACTGAGGGTGGCAGCAGGTGACAAAGCCGAGGCAGAGAAGATCATACAGATAAAAAAAGCAGAAGGAGAAGCAGAGTCAAAGTACCTATCAGGACTTGGTATTGCTAGGCAGAGACAAGCAATTGTTGATGGTCTTAGAGATAGTGTATTGGGATTCTCAGGTAATGTTCCTGGGACAAGTGCCAAGGATGTTATGGATATGATCCTTGTCACACAATACTTCGACACAATGAAAGAAATAGGTGCAGCTTCCAAATCATCAACTGTATTCATCCCTCATGGCCCTGGTGCTGTGCGTGATGTTGCCACACAGATCAGAGATGGACTTCTTCAAGGACAAGCGTCATCATCATCATCATCTCACTGA TTGGTGCTACCCCATTTTCGCCATTAAGCACTATCTTCAGCTTATTGTCAACACCTTCCTTCGTCTTTCTCTCTCCTCTTCCTCAATCTGAGAATTACATAAATCTATTACAATGGGAAACTTGTTATGCTGCGTTCAAATTGACCAGTCCACGGTTGCCATTAAGGAGAGCTTTGGGAAATATGATGATGTGCTTGAACCAGGGTGCCATTGTGTCCCCTGGTTCATTGGTCAGCAGATAGCAGGCAAGCTTAGTCTTCGTGTACAACAGTTGGATGTACGCTGTGAGACCAAGACCAAGGACAATGTGTTTGTCAATGTTGTTGCATCCATTCAATATCGTGCCCTTGCTGAGAAGGCAAATGATGCATTTTACAAGCTCAGCAACACTCGTTCCCAAATTCAGGCCTATGTTTTCGATGTGATCAGAGGCACTGTTCCAAGGCTCAATGTGGATGATGTGTTTGAGCAGAAGAGTGAAATTGCCAAAGCAGTTGCTGATGAACTCGAAAAAGCAATGTCTCACTATGGGTTTGAGATAGTTCAAACGCTGATTGTTGATATTGAACCTGATGAACATGTGAAGCGTGCCATGAATGAAATCAATGCTGGTAAGACGTTAATTGATCCGGCCATTATGTATGTTATGTCAGCTGCAAGACTGAGGGTGGCAGCAGGTGACAAAGCCGAGGCAGAGAAGATCATACAGATAAAAAAAGCAGAAGGAGAAGCAGAGTCAAAGTACCTATCAGGACTTGGTATTGCTAGGCAGAGACAAGCAATTGTTGATGGTCTTAGAGATAGTGTATTGGGATTCTCAGGTAATGTTCCTGGGACAAGTGCCAAGGATGTTATGGATATGATCCTTGTCACACAATACTTCGACACAATGAAAGAAATAGGTGCAGCTTCCAAATCATCAACTGTATTCATCCCTCATGGCCCTGGTGCTGTGCGTGATGTTGCCACACAGATCAGAGATGGACTTCTTCAAGGACAAGCGTCATCATCATCATCATCTCACTGA ATGGGAAACTTGTTATGCTGCGTTCAAATTGACCAGTCCACGGTTGCCATTAAGGAGAGCTTTGGGAAATATGATGATGTGCTTGAACCAGGGTGCCATTGTGTCCCCTGGTTCATTGGTCAGCAGATAGCAGGCAAGCTTAGTCTTCGTGTACAACAGTTGGATGTACGCTGTGAGACCAAGACCAAGGACAATGTGTTTGTCAATGTTGTTGCATCCATTCAATATCGTGCCCTTGCTGAGAAGGCAAATGATGCATTTTACAAGCTCAGCAACACTCGTTCCCAAATTCAGGCCTATGTTTTCGATGTGATCAGAGGCACTGTTCCAAGGCTCAATGTGGATGATGTGTTTGAGCAGAAGAGTGAAATTGCCAAAGCAGTTGCTGATGAACTCGAAAAAGCAATGTCTCACTATGGGTTTGAGATAGTTCAAACGCTGATTGTTGATATTGAACCTGATGAACATGTGAAGCGTGCCATGAATGAAATCAATGCTGGTAAGACGTTAATTGATCCGGCCATTATGTATGTTATGTCAGCTGCAAGACTGAGGGTGGCAGCAGGTGACAAAGCCGAGGCAGAGAAGATCATACAGATAAAAAAAGCAGAAGGAGAAGCAGAGTCAAAGTACCTATCAGGACTTGGTATTGCTAGGCAGAGACAAGCAATTGTTGATGGTCTTAGAGATAGTGTATTGGGATTCTCAGGTAATGTTCCTGGGACAAGTGCCAAGGATGTTATGGATATGATCCTTGTCACACAATACTTCGACACAATGAAAGAAATAGGTGCAGCTTCCAAATCATCAACTGTATTCATCCCTCATGGCCCTGGTGCTGTGCGTGATGTTGCCACACAGATCAGAGATGGACTTCTTCAAGGACAAGCGTCATCATCATCATCATCTCACTGA MGNLLCCVQIDQSTVAIKESFGKYDDVLEPGCHCVPWFIGQQIAGKLSLRVQQLDVRCETKTKDNVFVNVVASIQYRALAEKANDAFYKLSNTRSQIQAYVFDVIRGTVPRLNVDDVFEQKSEIAKAVADELEKAMSHYGFEIVQTLIVDIEPDEHVKRAMNEINAGKTLIDPAIMYVMSAARLRVAAGDKAEAEKIIQIKKAEGEAESKYLSGLGIARQRQAIVDGLRDSVLGFSGNVPGTSAKDVMDMILVTQYFDTMKEIGAASKSSTVFIPHGPGAVRDVATQIRDGLLQGQASSSSSSH Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo13815.1 vs. NCBI nr
Match: gi|902200850|gb|KNA13839.1| (hypothetical protein SOVF_112980 [Spinacia oleracea]) HSP 1 Score: 556.2 bits (1432), Expect = 3.500e-155 Identity = 290/304 (95.39%), Postives = 290/304 (95.39%), Query Frame = 1
BLAST of Spo13815.1 vs. NCBI nr
Match: gi|731319534|ref|XP_010670322.1| (PREDICTED: hypersensitive-induced response protein 1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 518.1 bits (1333), Expect = 1.100e-143 Identity = 265/299 (88.63%), Postives = 277/299 (92.64%), Query Frame = 1
BLAST of Spo13815.1 vs. NCBI nr
Match: gi|731319532|ref|XP_010670321.1| (PREDICTED: hypersensitive-induced response protein 1-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 510.4 bits (1313), Expect = 2.200e-141 Identity = 261/299 (87.29%), Postives = 276/299 (92.31%), Query Frame = 1
BLAST of Spo13815.1 vs. NCBI nr
Match: gi|151347473|gb|ABS01349.1| (hypersensitive-induced response protein [Carica papaya]) HSP 1 Score: 496.1 bits (1276), Expect = 4.300e-137 Identity = 251/297 (84.51%), Postives = 271/297 (91.25%), Query Frame = 1
BLAST of Spo13815.1 vs. NCBI nr
Match: gi|659105803|ref|XP_008453177.1| (PREDICTED: hypersensitive-induced response protein 1 [Cucumis melo]) HSP 1 Score: 495.0 bits (1273), Expect = 9.600e-137 Identity = 250/299 (83.61%), Postives = 274/299 (91.64%), Query Frame = 1
BLAST of Spo13815.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R4G6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_112980 PE=4 SV=1) HSP 1 Score: 556.2 bits (1432), Expect = 2.400e-155 Identity = 290/304 (95.39%), Postives = 290/304 (95.39%), Query Frame = 1
BLAST of Spo13815.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FMR7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g040430 PE=4 SV=1) HSP 1 Score: 518.1 bits (1333), Expect = 7.400e-144 Identity = 265/299 (88.63%), Postives = 277/299 (92.64%), Query Frame = 1
BLAST of Spo13815.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CTR0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g040420 PE=4 SV=1) HSP 1 Score: 510.4 bits (1313), Expect = 1.500e-141 Identity = 261/299 (87.29%), Postives = 276/299 (92.31%), Query Frame = 1
BLAST of Spo13815.1 vs. UniProtKB/TrEMBL
Match: A6YGE4_CARPA (Hypersensitive-induced response protein OS=Carica papaya PE=2 SV=1) HSP 1 Score: 496.1 bits (1276), Expect = 3.000e-137 Identity = 251/297 (84.51%), Postives = 271/297 (91.25%), Query Frame = 1
BLAST of Spo13815.1 vs. UniProtKB/TrEMBL
Match: A0A0A0LUG0_CUCSA (Hypersensitive-induced response protein OS=Cucumis sativus GN=Csa_1G008570 PE=4 SV=1) HSP 1 Score: 493.4 bits (1269), Expect = 1.900e-136 Identity = 249/299 (83.28%), Postives = 275/299 (91.97%), Query Frame = 1
BLAST of Spo13815.1 vs. ExPASy Swiss-Prot
Match: HIR1_ARATH (Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1) HSP 1 Score: 478.4 bits (1230), Expect = 5.800e-134 Identity = 242/299 (80.94%), Postives = 270/299 (90.30%), Query Frame = 1
BLAST of Spo13815.1 vs. ExPASy Swiss-Prot
Match: HIR2_ARATH (Hypersensitive-induced response protein 2 OS=Arabidopsis thaliana GN=HIR2 PE=1 SV=1) HSP 1 Score: 456.4 bits (1173), Expect = 2.400e-127 Identity = 228/299 (76.25%), Postives = 263/299 (87.96%), Query Frame = 1
BLAST of Spo13815.1 vs. ExPASy Swiss-Prot
Match: HIR3_ARATH (Hypersensitive-induced response protein 3 OS=Arabidopsis thaliana GN=HIR3 PE=1 SV=1) HSP 1 Score: 431.4 bits (1108), Expect = 8.100e-120 Identity = 218/299 (72.91%), Postives = 253/299 (84.62%), Query Frame = 1
BLAST of Spo13815.1 vs. ExPASy Swiss-Prot
Match: HIR4_ARATH (Hypersensitive-induced response protein 4 OS=Arabidopsis thaliana GN=HIR4 PE=1 SV=1) HSP 1 Score: 327.8 bits (839), Expect = 1.300e-88 Identity = 162/301 (53.82%), Postives = 223/301 (74.09%), Query Frame = 1
BLAST of Spo13815.1 vs. ExPASy Swiss-Prot
Match: PLZ12_LUPPO (Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE=2 SV=1) HSP 1 Score: 215.3 bits (547), Expect = 9.200e-55 Identity = 106/183 (57.92%), Postives = 143/183 (78.14%), Query Frame = 1
BLAST of Spo13815.1 vs. TAIR (Arabidopsis)
Match: AT5G62740.1 (SPFH/Band 7/PHB domain-containing membrane-associated protein family) HSP 1 Score: 478.4 bits (1230), Expect = 3.300e-135 Identity = 242/299 (80.94%), Postives = 270/299 (90.30%), Query Frame = 1
BLAST of Spo13815.1 vs. TAIR (Arabidopsis)
Match: AT1G69840.1 (SPFH/Band 7/PHB domain-containing membrane-associated protein family) HSP 1 Score: 456.4 bits (1173), Expect = 1.300e-128 Identity = 228/299 (76.25%), Postives = 263/299 (87.96%), Query Frame = 1
BLAST of Spo13815.1 vs. TAIR (Arabidopsis)
Match: AT3G01290.1 (SPFH/Band 7/PHB domain-containing membrane-associated protein family) HSP 1 Score: 431.4 bits (1108), Expect = 4.600e-121 Identity = 218/299 (72.91%), Postives = 253/299 (84.62%), Query Frame = 1
BLAST of Spo13815.1 vs. TAIR (Arabidopsis)
Match: AT5G51570.1 (SPFH/Band 7/PHB domain-containing membrane-associated protein family) HSP 1 Score: 327.8 bits (839), Expect = 7.100e-90 Identity = 162/301 (53.82%), Postives = 223/301 (74.09%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo13815.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo13815.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo13815.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo13815.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 4
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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