Spo13877 (gene)

Overview
NameSpo13877
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPutative mitochondrial outer membrane protein porin-like (Voltage-dependent anion-selective channel protein-like)
LocationSpoScf_17559 : 106 .. 813 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTATCACTTCTACTGGGACAAAGAAGGGCGAGTTGTTTTTGGCTGATGTCAGCACTAAGTTGACAAACAAGAATATTACCACCGATGTGAAAGTTGATACCAACTCCAATGTGAGTTTGTTTATTTGTATTACTACGAATTGATTCTATGATACATTACGGTTTCATTGGTTTATAGGTTTTTATAATTGGTAATTGTGTAAAATTTGGTGACAGATAGCATTGCTTTCTATGAACATCTTGTTTTACATAATTGGAATCTATTGTAATCTGATTCCAACTTCTTTGCTGTTTCCGTCTTCCGCTCCTAGCTTTTCACCACCATTACGTTGATGAACCTGCCCCTGGCTTGAAGGCTATTTTTAGTTTCCGTGTTCCTGATCANAGATCTGGCAAGGTACCATACAATTATCTTTCTAGTATTTTCTTACCTAAAGAGGCATGGTTCAAGATACTACGGGATAATGGTTCTAATTTGTGTAGTATAAATTATGTTAACAGGTTGAGCTTCAGTATTTGCATGAGTATGCTGGCATCAGCACAAGCCTTGGTTTGACAGCAAACCCCATTGTCAACTTTTCTGGTGTTTTTGGAAACAGTACTCTTGCTTTGGGTACTGACCTCTCATTTGACACTACTTCTGGAAACTTCACCAAATGCAATGCTGGGCTGAGCTTTACTAATGATGATCTCATTGCATCTGTGAAT

mRNA sequence

GCTATCACTTCTACTGGGACAAAGAAGGGCGAGTTGTTTTTGGCTGATGTCAGCACTAAGTTGACAAACAAGAATATTACCACCGATGTGAAAGTTGATACCAACTCCAATGTTGAGCTTCAGTATTTGCATGAGTATGCTGGCATCAGCACAAGCCTTGGTTTGACAGCAAACCCCATTGTCAACTTTTCTGGTGTTTTTGGAAACAGTACTCTTGCTTTGGGTACTGACCTCTCATTTGACACTACTTCTGGAAACTTCACCAAATGCAATGCTGGGCTGAGCTTTACTAATGATGATCTCATTGCATCTGTGAAT

Coding sequence (CDS)

GCTATCACTTCTACTGGGACAAAGAAGGGCGAGTTGTTTTTGGCTGATGTCAGCACTAAGTTGACAAACAAGAATATTACCACCGATGTGAAAGTTGATACCAACTCCAATGTTGAGCTTCAGTATTTGCATGAGTATGCTGGCATCAGCACAAGCCTTGGTTTGACAGCAAACCCCATTGTCAACTTTTCTGGTGTTTTTGGAAACAGTACTCTTGCTTTGGGTACTGACCTCTCATTTGACACTACTTCTGGAAACTTCACCAAATGCAATGCTGGGCTGAGCTTTACTAATGATGATCTCATTGCATCTGTGAAT

Protein sequence

AITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSNVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDTTSGNFTKCNAGLSFTNDDLIASVN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo13877.1Spo13877.1mRNA


Homology
[Close]
BLAST of Spo13877.1 vs. NCBI nr
Match: gi|1256259|gb|AAA96275.1| (voltage-dependent anion channel protein [Spinacia oleracea])

HSP 1 Score: 186.4 bits (472), Expect = 2.500e-44
Identity = 105/135 (77.78%), Postives = 105/135 (77.78%), Query Frame = 1 

		  

Query: 1   AITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSN----------------------- 60
           AITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSN                       
Sbjct: 40  AITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSNLFTTITVDEPAPGLKAIFSFRVP 99

Query: 61  ------VELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDTTSGNFTKCN 107
                 VELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDT SGNFTKCN
Sbjct: 100 DQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDTASGNFTKCN 159
[Close]
BLAST of Spo13877.1 vs. NCBI nr
Match: gi|731344143|ref|XP_010683253.1| (PREDICTED: mitochondrial outer membrane protein porin of 36 kDa [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 179.1 bits (453), Expect = 4.100e-42
Identity = 101/135 (74.81%), Postives = 103/135 (76.30%), Query Frame = 1 

		  

Query: 1   AITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSN----------------------- 60
           AITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSN                       
Sbjct: 40  AITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSNLFTTITVDEPAPGLKAIFSFRVP 99

Query: 61  ------VELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDTTSGNFTKCN 107
                 VELQYLHEYAGISTSLGLTANPIVNFSGV GNSTLALGTDLSFDT SGNFTKCN
Sbjct: 100 DQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVIGNSTLALGTDLSFDTASGNFTKCN 159
[Close]
BLAST of Spo13877.1 vs. NCBI nr
Match: gi|702421950|ref|XP_010066951.1| (PREDICTED: mitochondrial outer membrane protein porin of 36 kDa [Eucalyptus grandis])

HSP 1 Score: 163.3 bits (412), Expect = 2.300e-37
Identity = 92/134 (68.66%), Postives = 97/134 (72.39%), Query Frame = 1 

		  

Query: 1   AITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSN----------------------- 60
           A+TSTG KKGE FLADVST+L NKNITTDVKVDTNSN                       
Sbjct: 40  ALTSTGIKKGEFFLADVSTQLKNKNITTDVKVDTNSNLLTTITVDEPAPGLKTIFSFIVP 99

Query: 61  ------VELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDTTSGNFTKCN 106
                 VELQY HEYAGISTS+GLTANPIVNFSGV GN+ LALGTDLSFDT SGNFTKCN
Sbjct: 100 DQRSGKVELQYQHEYAGISTSIGLTANPIVNFSGVVGNNLLALGTDLSFDTASGNFTKCN 159
[Close]
BLAST of Spo13877.1 vs. NCBI nr
Match: gi|225424908|ref|XP_002276636.1| (PREDICTED: mitochondrial outer membrane protein porin of 36 kDa [Vitis vinifera])

HSP 1 Score: 161.8 bits (408), Expect = 6.700e-37
Identity = 89/134 (66.42%), Postives = 100/134 (74.63%), Query Frame = 1 

		  

Query: 1   AITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSN----------------------- 60
           AITS+GTKKGELF+ADV+T+L NKNITTDVKVDTNSN                       
Sbjct: 40  AITSSGTKKGELFIADVNTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKTIFSFIIP 99

Query: 61  ------VELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDTTSGNFTKCN 106
                 VELQYLHEYAGISTS+GLTANPIVNFSGV GN+TL+LGTDLSFDT +GNFTKCN
Sbjct: 100 DQRSGKVELQYLHEYAGISTSIGLTANPIVNFSGVVGNNTLSLGTDLSFDTATGNFTKCN 159
[Close]
BLAST of Spo13877.1 vs. NCBI nr
Match: gi|296086428|emb|CBI32017.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 161.8 bits (408), Expect = 6.700e-37
Identity = 89/134 (66.42%), Postives = 100/134 (74.63%), Query Frame = 1 

		  

Query: 1   AITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSN----------------------- 60
           AITS+GTKKGELF+ADV+T+L NKNITTDVKVDTNSN                       
Sbjct: 40  AITSSGTKKGELFIADVNTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKTIFSFIIP 99

Query: 61  ------VELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDTTSGNFTKCN 106
                 VELQYLHEYAGISTS+GLTANPIVNFSGV GN+TL+LGTDLSFDT +GNFTKCN
Sbjct: 100 DQRSGKVELQYLHEYAGISTSIGLTANPIVNFSGVVGNNTLSLGTDLSFDTATGNFTKCN 159
[Close]
BLAST of Spo13877.1 vs. UniProtKB/TrEMBL
Match: Q41368_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SVDAC1 PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.800e-44
Identity = 105/135 (77.78%), Postives = 105/135 (77.78%), Query Frame = 1 

		  

Query: 1   AITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSN----------------------- 60
           AITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSN                       
Sbjct: 40  AITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSNLFTTITVDEPAPGLKAIFSFRVP 99

Query: 61  ------VELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDTTSGNFTKCN 107
                 VELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDT SGNFTKCN
Sbjct: 100 DQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDTASGNFTKCN 159
[Close]
BLAST of Spo13877.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C4I7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g154570 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.800e-42
Identity = 101/135 (74.81%), Postives = 103/135 (76.30%), Query Frame = 1 

		  

Query: 1   AITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSN----------------------- 60
           AITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSN                       
Sbjct: 40  AITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSNLFTTITVDEPAPGLKAIFSFRVP 99

Query: 61  ------VELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDTTSGNFTKCN 107
                 VELQYLHEYAGISTSLGLTANPIVNFSGV GNSTLALGTDLSFDT SGNFTKCN
Sbjct: 100 DQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVIGNSTLALGTDLSFDTASGNFTKCN 159
[Close]
BLAST of Spo13877.1 vs. UniProtKB/TrEMBL
Match: A0A059BGL5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02544 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.600e-37
Identity = 92/134 (68.66%), Postives = 97/134 (72.39%), Query Frame = 1 

		  

Query: 1   AITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSN----------------------- 60
           A+TSTG KKGE FLADVST+L NKNITTDVKVDTNSN                       
Sbjct: 40  ALTSTGIKKGEFFLADVSTQLKNKNITTDVKVDTNSNLLTTITVDEPAPGLKTIFSFIVP 99

Query: 61  ------VELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDTTSGNFTKCN 106
                 VELQY HEYAGISTS+GLTANPIVNFSGV GN+ LALGTDLSFDT SGNFTKCN
Sbjct: 100 DQRSGKVELQYQHEYAGISTSIGLTANPIVNFSGVVGNNLLALGTDLSFDTASGNFTKCN 159
[Close]
BLAST of Spo13877.1 vs. UniProtKB/TrEMBL
Match: F6HPF2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g01650 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 4.700e-37
Identity = 89/134 (66.42%), Postives = 100/134 (74.63%), Query Frame = 1 

		  

Query: 1   AITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSN----------------------- 60
           AITS+GTKKGELF+ADV+T+L NKNITTDVKVDTNSN                       
Sbjct: 40  AITSSGTKKGELFIADVNTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKTIFSFIIP 99

Query: 61  ------VELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDTTSGNFTKCN 106
                 VELQYLHEYAGISTS+GLTANPIVNFSGV GN+TL+LGTDLSFDT +GNFTKCN
Sbjct: 100 DQRSGKVELQYLHEYAGISTSIGLTANPIVNFSGVVGNNTLSLGTDLSFDTATGNFTKCN 159
[Close]
BLAST of Spo13877.1 vs. UniProtKB/TrEMBL
Match: A9P802_POPTR (Porin family protein OS=Populus trichocarpa GN=POPTR_0010s04240g PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.300e-36
Identity = 89/134 (66.42%), Postives = 98/134 (73.13%), Query Frame = 1 

		  

Query: 1   AITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSN----------------------- 60
           AITSTG KKGELFLAD+S++L NKNITTDVKVDTNSN                       
Sbjct: 40  AITSTGIKKGELFLADISSQLKNKNITTDVKVDTNSNLLTTITIDEPAPGLKTIFSFKVP 99

Query: 61  ------VELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDTTSGNFTKCN 106
                 VELQY HEYAGISTSLGLTANPIVNFSGV G++ +ALGTDLSFDT +GNFTKCN
Sbjct: 100 DQRSGKVELQYQHEYAGISTSLGLTANPIVNFSGVVGSNVVALGTDLSFDTATGNFTKCN 159
[Close]
BLAST of Spo13877.1 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 157.5 bits (397), Expect = 7.900e-38
Identity = 87/134 (64.93%), Postives = 100/134 (74.63%), Query Frame = 1 

		  

Query: 1   AITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSNV---------------------- 60
           AIT++G KKGELFLADVST+L NKNITTDVKVDTNSNV                      
Sbjct: 40  AITASGLKKGELFLADVSTQLKNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVP 99

Query: 61  -------ELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDTTSGNFTKCN 106
                  ELQYLHEYAGI+TS+GLTA+P+VNFSGV GN+T+ALGTDLSFDT +GNFTKCN
Sbjct: 100 DQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCN 159
[Close]
BLAST of Spo13877.1 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 149.8 bits (377), Expect = 1.600e-35
Identity = 80/134 (59.70%), Postives = 98/134 (73.13%), Query Frame = 1 

		  

Query: 2   ITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSNV----------------------- 61
           ITS+G+KKG+LFLADV+T+L NKN+TTD+KVDTNSN+                       
Sbjct: 41  ITSSGSKKGDLFLADVNTQLKNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPD 100

Query: 62  ------ELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDTTSGNFTKCNA 107
                 E+QYLH+YAGI TS+GLTANPIVNFSGV G + +ALGTD+SFDT +G+FTKCNA
Sbjct: 101 QRSGKLEVQYLHDYAGICTSVGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNA 160
[Close]
BLAST of Spo13877.1 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 134.0 bits (336), Expect = 9.400e-31
Identity = 76/134 (56.72%), Postives = 87/134 (64.93%), Query Frame = 1 

		  

Query: 1   AITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSN----------------------- 60
           AITS+GTKKGELFL DV+T+L NKNITTD+KVDTNSN                       
Sbjct: 40  AITSSGTKKGELFLGDVNTQLKNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVP 99

Query: 61  ------VELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDTTSGNFTKCN 106
                 VELQYLHEYAGIS+S+GL ANPIVNFS V G + LA G D+SFDT  G  TK N
Sbjct: 100 EQTSGKVELQYLHEYAGISSSVGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSN 159
[Close]
BLAST of Spo13877.1 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 133.7 bits (335), Expect = 1.200e-30
Identity = 79/134 (58.96%), Postives = 90/134 (67.16%), Query Frame = 1 

		  

Query: 1   AITSTGTKKGELFLADVSTKLTNKNITTDVKV---------------------------- 60
           AITSTGTKKG+L L DV+ +   KNITTD+KV                            
Sbjct: 40  AITSTGTKKGDLLLGDVAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVP 99

Query: 61  DTNSN-VELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDTTSGNFTKCN 106
           D NS  VELQYLHEYAGISTS+GLT NP VNFSGV G++ LA+GTD+SFDT SGNFTK N
Sbjct: 100 DQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKIN 159
[Close]
BLAST of Spo13877.1 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin 1 OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 119.4 bits (298), Expect = 2.400e-26
Identity = 65/135 (48.15%), Postives = 85/135 (62.96%), Query Frame = 1 

		  

Query: 1   AITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSNV---------------------- 60
           AIT+T TKK +L   ++ +++ NKNIT DVK +++SNV                      
Sbjct: 39  AITATSTKKADLIFGEIQSQIKNKNITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVP 98

Query: 61  -------ELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDTTSGNFTKCN 107
                  ELQY H+YAG+S S+GLTA+P+VN S VFG   LA+G D+S DT +GN TK N
Sbjct: 99  DQRSGKFELQYSHDYAGVSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYN 158
[Close]
BLAST of Spo13877.1 vs. TAIR (Arabidopsis)
Match: AT3G01280.1 (voltage dependent anion channel 1)

HSP 1 Score: 133.7 bits (335), Expect = 6.900e-32
Identity = 79/134 (58.96%), Postives = 90/134 (67.16%), Query Frame = 1 

		  

Query: 1   AITSTGTKKGELFLADVSTKLTNKNITTDVKV---------------------------- 60
           AITSTGTKKG+L L DV+ +   KNITTD+KV                            
Sbjct: 40  AITSTGTKKGDLLLGDVAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVP 99

Query: 61  DTNSN-VELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDTTSGNFTKCN 106
           D NS  VELQYLHEYAGISTS+GLT NP VNFSGV G++ LA+GTD+SFDT SGNFTK N
Sbjct: 100 DQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKIN 159
[Close]
BLAST of Spo13877.1 vs. TAIR (Arabidopsis)
Match: AT5G15090.1 (voltage dependent anion channel 3)

HSP 1 Score: 117.5 bits (293), Expect = 5.100e-27
Identity = 66/134 (49.25%), Postives = 84/134 (62.69%), Query Frame = 1 

		  

Query: 1   AITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSNV---------------------- 60
           AIT+TGT KG LFL DV+T++ N N T DVKV T+S++                      
Sbjct: 40  AITTTGTNKGSLFLGDVATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLP 99

Query: 61  -------ELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDTTSGNFTKCN 106
                  E+QY H+YAGISTS+G TA PIVNFSGV G + L+LGTD++++T SGNF   N
Sbjct: 100 DHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFN 159
[Close]
BLAST of Spo13877.1 vs. TAIR (Arabidopsis)
Match: AT5G67500.2 (voltage dependent anion channel 2)

HSP 1 Score: 75.1 bits (183), Expect = 2.900e-14
Identity = 44/134 (32.84%), Postives = 68/134 (50.75%), Query Frame = 1 

		  

Query: 1   AITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSNV---------------------- 60
           A+TST  KKG +  ADV+T+   KN   DVK+DT+S+V                      
Sbjct: 67  ALTSTALKKGGVHAADVATQYKYKNALFDVKIDTDSSVLTTVTLTEILPSTKAIASFKVP 126

Query: 61  -------ELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDTTSGNFTKCN 106
                  E+QY H++A ++ +  L  NP+++ +   G+  ++ G +  +DTTS  FTK N
Sbjct: 127 DYNSAKLEVQYFHDHATVTAAAALKQNPLIDITATLGSPVISFGAEAGYDTTSKTFTKYN 186
[Close]
BLAST of Spo13877.1 vs. TAIR (Arabidopsis)
Match: AT5G57490.1 (voltage dependent anion channel 4)

HSP 1 Score: 70.9 bits (172), Expect = 5.500e-13
Identity = 39/131 (29.77%), Postives = 68/131 (51.91%), Query Frame = 1 

		  

Query: 4   STGTKKGELFLADVSTKLTNKNITTDVKVDTNSNV------------------------- 63
           +TG KK + F  D+ST    +N   D+K+D++S+V                         
Sbjct: 43  ATGLKKDDFFFGDISTLYKGQNTIVDLKIDSHSSVSTKVTLKNLLPSAKAVISFKIPDHK 102

Query: 64  ----ELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDTTSGNFTKCNAGL 106
               ++QY+H +A +++S+GL   P+++ S   G+  + LG ++SFDT S + TK NAG+
Sbjct: 103 SGKLDVQYVHPHATLNSSIGLNPTPLLDLSATIGSQNVCLGGEVSFDTASSSLTKYNAGI 162
The following BLAST results are available for this feature:
BLAST of Spo13877.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|1256259|gb|AAA96275.1|2.5e-4477.7voltage-dependent anion channe... [more]
gi|731344143|ref|XP_010683253.1|4.1e-4274.8PREDICTED: mitochondrial outer... [more]
gi|702421950|ref|XP_010066951.1|2.3e-3768.6PREDICTED: mitochondrial outer... [more]
gi|225424908|ref|XP_002276636.1|6.7e-3766.4PREDICTED: mitochondrial outer... [more]
gi|296086428|emb|CBI32017.3|6.7e-3766.4unnamed protein product [Vitis... [more]
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BLAST of Spo13877.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
Q41368_SPIOL1.8e-4477.7Uncharacterized protein OS=Spi... [more]
A0A0J8C4I7_BETVU2.8e-4274.8Uncharacterized protein OS=Bet... [more]
A0A059BGL5_EUCGR1.6e-3768.6Uncharacterized protein OS=Euc... [more]
F6HPF2_VITVI4.7e-3766.4Putative uncharacterized prote... [more]
A9P802_POPTR2.3e-3666.4Porin family protein OS=Populu... [more]
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BLAST of Spo13877.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
VDAC2_SOLTU7.9e-3864.9Mitochondrial outer membrane p... [more]
VDAC1_SOLTU1.6e-3559.7Mitochondrial outer membrane p... [more]
VDAC_PEA9.4e-3156.7Outer plastidial membrane prot... [more]
VDAC1_ARATH1.2e-3058.9Mitochondrial outer membrane p... [more]
VDAC1_ORYSJ2.4e-2648.1Mitochondrial outer membrane p... [more]
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BLAST of Spo13877.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4
Match NameE-valueIdentityDescription
AT3G01280.16.9e-3258.9voltage dependent anion channe... [more]
AT5G15090.15.1e-2749.2voltage dependent anion channe... [more]
AT5G67500.22.9e-1432.8voltage dependent anion channe... [more]
AT5G57490.15.5e-1329.7voltage dependent anion channe... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023614Porin domainGENE3D2.40.160.10coord: 35..106
score: 5.6
IPR027246Eukaryotic porin/Tom40PFAMPF01459Porin_3coord: 26..105
score: 4.9
NoneNo IPR availablePANTHERPTHR11743VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNELcoord: 1..105
score: 4.9
NoneNo IPR availablePANTHERPTHR11743:SF31SUBFAMILY NOT NAMEDcoord: 1..105
score: 4.9

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006820 anion transport
biological_process GO:0006366 transcription by RNA polymerase II
biological_process GO:0070932 histone H3 deacetylation
biological_process GO:0048575 short-day photoperiodism, flowering
biological_process GO:0007062 sister chromatid cohesion
biological_process GO:0006810 transport
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0030001 metal ion transport
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0070933 histone H4 deacetylation
biological_process GO:0010104 regulation of ethylene-activated signaling pathway
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0009736 cytokinin-activated signaling pathway
biological_process GO:0006121 mitochondrial electron transport, succinate to ubiquinone
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0006099 tricarboxylic acid cycle
biological_process GO:0061647 histone H3-K9 modification
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0048825 cotyledon development
biological_process GO:0000209 protein polyubiquitination
biological_process GO:0010072 primary shoot apical meristem specification
biological_process GO:0010100 negative regulation of photomorphogenesis
biological_process GO:0000278 mitotic cell cycle
biological_process GO:0019915 lipid storage
biological_process GO:0009880 embryonic pattern specification
biological_process GO:0006281 DNA repair
biological_process GO:0009738 abscisic acid-activated signaling pathway
biological_process GO:0055085 transmembrane transport
biological_process GO:0051301 cell division
biological_process GO:0007049 cell cycle
biological_process GO:0006396 RNA processing
biological_process GO:0035194 posttranscriptional gene silencing by RNA
biological_process GO:0009909 regulation of flower development
biological_process GO:0050826 response to freezing
biological_process GO:0010162 seed dormancy process
biological_process GO:0009845 seed germination
biological_process GO:0045595 regulation of cell differentiation
biological_process GO:0032502 developmental process
biological_process GO:0008152 metabolic process
biological_process GO:0001510 RNA methylation
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0016049 cell growth
biological_process GO:0009058 biosynthetic process
biological_process GO:0044070 regulation of anion transport
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006406 mRNA export from nucleus
biological_process GO:0006606 protein import into nucleus
biological_process GO:0060560 developmental growth involved in morphogenesis
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0045185 maintenance of protein location
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006890 retrograde vesicle-mediated transport, Golgi to ER
biological_process GO:0006520 cellular amino acid metabolic process
biological_process GO:0048869 cellular developmental process
biological_process GO:0016043 cellular component organization
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006108 malate metabolic process
biological_process GO:0006090 pyruvate metabolic process
biological_process GO:0019643 reductive tricarboxylic acid cycle
biological_process GO:0044238 primary metabolic process
biological_process GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0006508 proteolysis
biological_process GO:0010015 root morphogenesis
biological_process GO:0006334 nucleosome assembly
biological_process GO:0010817 regulation of hormone levels
biological_process GO:0010564 regulation of cell cycle process
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0030127 COPII vesicle coat
cellular_component GO:0005829 cytosol
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0016020 membrane
cellular_component GO:0005737 cytoplasm
cellular_component GO:0009506 plasmodesma
cellular_component GO:0080008 Cul4-RING E3 ubiquitin ligase complex
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0045281 succinate dehydrogenase complex
cellular_component GO:0000785 chromatin
cellular_component GO:0000118 histone deacetylase complex
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005741 mitochondrial outer membrane
cellular_component GO:0005622 intracellular
cellular_component GO:0000786 nucleosome
cellular_component GO:0031969 chloroplast membrane
cellular_component GO:0005669 transcription factor TFIID complex
cellular_component GO:0005840 ribosome
cellular_component GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component GO:0009840 chloroplastic endopeptidase Clp complex
cellular_component GO:0005739 mitochondrion
molecular_function GO:0004386 helicase activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0008308 voltage-gated anion channel activity
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0017069 snRNA binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water
molecular_function GO:0015267 channel activity
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0046970 NAD-dependent histone deacetylase activity (H4-K16 specific)
molecular_function GO:0030060 L-malate dehydrogenase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0097372 NAD-dependent histone deacetylase activity (H3-K18 specific)
molecular_function GO:0032041 NAD-dependent histone deacetylase activity (H3-K14 specific)
molecular_function GO:0005215 transporter activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
molecular_function GO:0031625 ubiquitin protein ligase binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0046969 NAD-dependent histone deacetylase activity (H3-K9 specific)
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding
molecular_function GO:0051538 3 iron, 4 sulfur cluster binding
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0008177 succinate dehydrogenase (ubiquinone) activity
molecular_function GO:0004045 aminoacyl-tRNA hydrolase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0050897 cobalt ion binding
molecular_function GO:0016491 oxidoreductase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo104500.98Barchart | Table
Spo257330.85Barchart | Table
Spo181430.81Barchart | Table
Spo054150.79Barchart | Table
Spo067110.79Barchart | Table
Spo249360.79Barchart | Table
Spo004440.77Barchart | Table
Spo030080.77Barchart | Table
Spo063410.76Barchart | Table
Spo150920.76Barchart | Table
Spo249370.76Barchart | Table
Spo037140.75Barchart | Table
Spo111640.75Barchart | Table
Spo062770.75Barchart | Table
Spo063800.74Barchart | Table
Spo011830.73Barchart | Table
Spo251000.73Barchart | Table
Spo242130.73Barchart | Table
Spo021050.73Barchart | Table
Spo214760.73Barchart | Table
Spo170390.72Barchart | Table
Spo253460.72Barchart | Table
Spo249160.72Barchart | Table
Spo241280.72Barchart | Table
Spo178360.72Barchart | Table
Spo137890.72Barchart | Table
Spo081980.71Barchart | Table
Spo163780.71Barchart | Table
Spo214720.71Barchart | Table
Spo202350.70Barchart | Table
Spo030070.70Barchart | Table
Spo255070.70Barchart | Table
Spo064970.70Barchart | Table
Spo214060.70Barchart | Table
Spo096330.70Barchart | Table
Spo230670.69Barchart | Table
Spo051840.69Barchart | Table
Spo052500.69Barchart | Table
Spo196640.69Barchart | Table
Spo225860.69Barchart | Table
Spo242250.69Barchart | Table
Spo280410.68Barchart | Table
Spo102110.68Barchart | Table
Spo091470.68Barchart | Table
Spo026090.68Barchart | Table
Spo262060.68Barchart | Table
Spo134870.68Barchart | Table
Spo230920.68Barchart | Table
Spo120840.68Barchart | Table
Spo029930.68Barchart | Table
Spo145130.68Barchart | Table
Spo192310.68Barchart | Table
Spo196580.68Barchart | Table
Spo244160.67Barchart | Table
Spo251750.67Barchart | Table
Spo030060.67Barchart | Table
Spo257790.67Barchart | Table
Spo188010.67Barchart | Table
Spo011280.67Barchart | Table
Spo074480.67Barchart | Table
Spo262050.67Barchart | Table
Spo138180.66Barchart | Table
Spo063910.66Barchart | Table
Spo061010.66Barchart | Table
Spo052320.66Barchart | Table
Spo014780.66Barchart | Table
Spo143780.66Barchart | Table
Spo241900.65Barchart | Table
Spo079160.65Barchart | Table
Spo103000.65Barchart | Table
Spo212030.65Barchart | Table
Spo182200.65Barchart | Table
Spo138530.65Barchart | Table
Spo049590.65Barchart | Table
Spo060970.65Barchart | Table