Spo13880 (gene) | SpinachBase

Overview


Name	Spo13880
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	RNA pseudouridine synthase
Location	chr4 : 20630384 .. 20632880 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATTTGTTAAAAAAAATTTTGCAACTTTGCAAGATAATATTTTTATCTATTCAAATCCCAAAATGTATTTTTCTTTGATTTTCTTGTTCAAAATTCCAACTCCTTCATTATTCATATGAATCATATGTGAAGTTGATCCTCCCATAGTCCCATGGCGTACTCATTGACTCTCGTCTCTTGACTTCTTGAGCCATTTCCCTTTTGATGTTCTCCGTTGCTCGTTGTTTCACCCACCTTCTACGCTCTGAACTCCTGCACCCCATCAAACACTCCCTAATCAAACTCTTCTCACAATCAACCCCACAAGTTTCAATGTCGTCCGAAACCCCAGAACAATTAAATTCAACTTCAATGGAAGAAACCCAATTGGCAAATGACCCCAAAACCCCATCAATCTCCCCTTACCCGACTCCATTATCCCCACCATTGCCCCTAATTTCCAAAGAAATCGAGCTTAGCAGAGCCATGTCCGCTTCTTCTAAGGCCACCACCTTTTCTCTTTCCAGGGATGACGTTATCTTTGAGGATCAATGGTTGCTTGTTGTCAATAAACCCTTTGGGATTTACTGTGAGACTGTCTTGTTTTCTGTCCCTCATCTTCTCCAACAGTCTCCTGGTTAGTTTGTTATTCTCTTGAATTAACTGGTTATTTATCTGATTTATTGAAGTTTTGGAATTTTTTATCAGATTTATGAGTTTGTTATTGAATTTTGTGCATAACCTAGTTGCTACTTGCTGATGTGTTTGTTAAATTTAATTTAATTTCTGCATCTTTTATGCTAGGAAAGGCTTAAATTAGGGATGTTTGATTGGATTCTATATTGTTCTATACTTATTGAGATATTGATATTTGCGCAGCCTGTTTGGTAATGAATTAGAGGAAATGGGCATGCAAAATTGTGCTTAAACTAGGAGGTTTTATCTATTTTGATGTCAATGTATGTAACATGTAACAAAGAAATTTACTGTCTCCGTAATTTATAAATGTGGATAGTTGTGGGTGTATTAGGGATTTGAAATGAGGGAAGATGATATCATGTTTGCTTTAGGGGATACATTACCTTGGAATCTTTGATGTTTGAAGTGGTTTTAGATGATATTATGGGCTTTTACGCGTCTTATCACATTTTCTATGAATTTATGTCTCGAAAAAGGTGGTCTGTAAAGTACCGAGGAAGGCAATGATGACCTGAATTTTCGTTCATCGGAGAGGATGGTTATATTATATGACTACATTAGATTTAGTATTTTTCCCACCCCCAATAAAAAACATTAAAAAAATTAAGACAGATCAGGTGGATCGTTTAGTATCAAGCTTCCATGGGTATAATAATTGTCTTGAATCTTGATGTATGGGGAAAGGCTTTGCATTAGTTGTTGTTGGTGTTGTCATAAATGGCTGACAAACTTAACCTTCAAGTAGAAGTTAAAATTATTGGCAGTTTAGCATGATGGAATTTTGAAATTTGGAGAGAAGATCATAAGGCTGCATTTGGAGTAGGGTTTCTCTGAAAAGGCTTTCCTTTGGACGTGGATACCTGATAGTCTGATACTCCTGAATGTTTTGAAACAGGAGTGTTACTGATGGTCTTAATCTTAAAGAGGTTTGACGTGTGGAAGATTATCTTCATTAAAACTTGGTTAGCTGACTTAGCTCCATCAAAATTTGGTAACATGCTGGATGTCAAAAAAGCTCCAATCAGCTGACAAGTGATAACATTGAACAATAAGTTTTCTGTATGGCATATATTAGCTGCTAACCTGTATATCCGCTACATTTCATGATTTGCATCATAACTTTGTGTTCCATTGTACTGCGTGGTTTCAGATTCAGTTGAAGCTTCAGAGTTCCACCTTGCTAACAGGCTGGATCGTGATACAAGTGGTGTAATGGTTATAACCAAATTACACAAAGTAGCTGGCAAGCTTGTCAAGGCCTTTACTGATCACAAGGTCCAAAAAACTTATATGGCTCTTTGTGTAGGTTCTGCACCAAAATGGGACAGGATCAGGTTGCAATCTGGCCATGGTAGGTCTAAATATGGTGCTTGGCGTGTATATGCTTCATCAGTTGTTGGACGGAAACTACCTGGTGGATCTGCGGTGAAGCACATGGAGACTCTTTTCGAGTTATTATCAGTAAATAGGACTGTCCATTTTATAGAGCCATCTAAATGTGCAAAAGATCAAGAAAAAACTGTGGTAGTTGAGGAGAAATCATCAACAGATGCTAACCAAGGAAGGGATGAGATATTGGTCCGAGCTTTTCCAAAGAGTGGAAGGACACATCAAATCCGGCTGCACTGTCAGTACCTCGGAATGCCTATAAAAGGGGATGTAAAATATGAAGGTGTCTGTGAATGGAAAGGGGAGATTTGTGATGGCCATACCCTTCATGCAGAGAGTTTATCATTGGAACACCCAGTTACTGGTCTTCCAGTCAAATTTCATGCACCATTGCCTCTCTGGGCAACCCAAGCTATGCAATCACGATGA

mRNA sequence

GAATTTGTTAAAAAAAATTTTGCAACTTTGCAAGATAATATTTTTATCTATTCAAATCCCAAAATGTATTTTTCTTTGATTTTCTTGTTCAAAATTCCAACTCCTTCATTATTCATATGAATCATATGTGAAGTTGATCCTCCCATAGTCCCATGGCGTACTCATTGACTCTCGTCTCTTGACTTCTTGAGCCATTTCCCTTTTGATGTTCTCCGTTGCTCGTTGTTTCACCCACCTTCTACGCTCTGAACTCCTGCACCCCATCAAACACTCCCTAATCAAACTCTTCTCACAATCAACCCCACAAGTTTCAATGTCGTCCGAAACCCCAGAACAATTAAATTCAACTTCAATGGAAGAAACCCAATTGGCAAATGACCCCAAAACCCCATCAATCTCCCCTTACCCGACTCCATTATCCCCACCATTGCCCCTAATTTCCAAAGAAATCGAGCTTAGCAGAGCCATGTCCGCTTCTTCTAAGGCCACCACCTTTTCTCTTTCCAGGGATGACGTTATCTTTGAGGATCAATGGTTGCTTGTTGTCAATAAACCCTTTGGGATTTACTGTGAGACTGTCTTGTTTTCTGTCCCTCATCTTCTCCAACAGTCTCCTGATTCAGTTGAAGCTTCAGAGTTCCACCTTGCTAACAGGCTGGATCGTGATACAAGTGGTGTAATGGTTATAACCAAATTACACAAAGTAGCTGGCAAGCTTGTCAAGGCCTTTACTGATCACAAGGTCCAAAAAACTTATATGGCTCTTTGTGTAGGTTCTGCACCAAAATGGGACAGGATCAGGTTGCAATCTGGCCATGGTAGGTCTAAATATGGTGCTTGGCGTGTATATGCTTCATCAGTTGTTGGACGGAAACTACCTGGTGGATCTGCGGTGAAGCACATGGAGACTCTTTTCGAGTTATTATCAGTAAATAGGACTGTCCATTTTATAGAGCCATCTAAATGTGCAAAAGATCAAGAAAAAACTGTGGTAGTTGAGGAGAAATCATCAACAGATGCTAACCAAGGAAGGGATGAGATATTGGTCCGAGCTTTTCCAAAGAGTGGAAGGACACATCAAATCCGGCTGCACTGTCAGTACCTCGGAATGCCTATAAAAGGGGATGTAAAATATGAAGGTGTCTGTGAATGGAAAGGGGAGATTTGTGATGGCCATACCCTTCATGCAGAGAGTTTATCATTGGAACACCCAGTTACTGGTCTTCCAGTCAAATTTCATGCACCATTGCCTCTCTGGGCAACCCAAGCTATGCAATCACGATGA

Coding sequence (CDS)

ATGTTCTCCGTTGCTCGTTGTTTCACCCACCTTCTACGCTCTGAACTCCTGCACCCCATCAAACACTCCCTAATCAAACTCTTCTCACAATCAACCCCACAAGTTTCAATGTCGTCCGAAACCCCAGAACAATTAAATTCAACTTCAATGGAAGAAACCCAATTGGCAAATGACCCCAAAACCCCATCAATCTCCCCTTACCCGACTCCATTATCCCCACCATTGCCCCTAATTTCCAAAGAAATCGAGCTTAGCAGAGCCATGTCCGCTTCTTCTAAGGCCACCACCTTTTCTCTTTCCAGGGATGACGTTATCTTTGAGGATCAATGGTTGCTTGTTGTCAATAAACCCTTTGGGATTTACTGTGAGACTGTCTTGTTTTCTGTCCCTCATCTTCTCCAACAGTCTCCTGATTCAGTTGAAGCTTCAGAGTTCCACCTTGCTAACAGGCTGGATCGTGATACAAGTGGTGTAATGGTTATAACCAAATTACACAAAGTAGCTGGCAAGCTTGTCAAGGCCTTTACTGATCACAAGGTCCAAAAAACTTATATGGCTCTTTGTGTAGGTTCTGCACCAAAATGGGACAGGATCAGGTTGCAATCTGGCCATGGTAGGTCTAAATATGGTGCTTGGCGTGTATATGCTTCATCAGTTGTTGGACGGAAACTACCTGGTGGATCTGCGGTGAAGCACATGGAGACTCTTTTCGAGTTATTATCAGTAAATAGGACTGTCCATTTTATAGAGCCATCTAAATGTGCAAAAGATCAAGAAAAAACTGTGGTAGTTGAGGAGAAATCATCAACAGATGCTAACCAAGGAAGGGATGAGATATTGGTCCGAGCTTTTCCAAAGAGTGGAAGGACACATCAAATCCGGCTGCACTGTCAGTACCTCGGAATGCCTATAAAAGGGGATGTAAAATATGAAGGTGTCTGTGAATGGAAAGGGGAGATTTGTGATGGCCATACCCTTCATGCAGAGAGTTTATCATTGGAACACCCAGTTACTGGTCTTCCAGTCAAATTTCATGCACCATTGCCTCTCTGGGCAACCCAAGCTATGCAATCACGATGA

Protein sequence

MFSVARCFTHLLRSELLHPIKHSLIKLFSQSTPQVSMSSETPEQLNSTSMEETQLANDPKTPSISPYPTPLSPPLPLISKEIELSRAMSASSKATTFSLSRDDVIFEDQWLLVVNKPFGIYCETVLFSVPHLLQQSPDSVEASEFHLANRLDRDTSGVMVITKLHKVAGKLVKAFTDHKVQKTYMALCVGSAPKWDRIRLQSGHGRSKYGAWRVYASSVVGRKLPGGSAVKHMETLFELLSVNRTVHFIEPSKCAKDQEKTVVVEEKSSTDANQGRDEILVRAFPKSGRTHQIRLHCQYLGMPIKGDVKYEGVCEWKGEICDGHTLHAESLSLEHPVTGLPVKFHAPLPLWATQAMQSR

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo13880.1	Spo13880.1	mRNA

Homology

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BLAST of Spo13880.1 vs. NCBI nr
Match: gi|902155274|gb|KNA05885.1| (hypothetical protein SOVF_186260 [Spinacia oleracea])

HSP 1 Score: 629.8 bits (1623), Expect = 2.900e-177
Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 1


		  
Query: 50  MEETQLANDPKTPSISPYPTPLSPPLPLISKEIELSRAMSASSKATTFSLSRDDVIFEDQ 109
           MEETQLANDPKTPSISPYPTPLSPPLPLISKEIELSRAMSASSKATTFSLSRDDVIFEDQ
Sbjct: 1   MEETQLANDPKTPSISPYPTPLSPPLPLISKEIELSRAMSASSKATTFSLSRDDVIFEDQ 60

Query: 110 WLLVVNKPFGIYCETVLFSVPHLLQQSPDSVEASEFHLANRLDRDTSGVMVITKLHKVAG 169
           WLLVVNKPFGIYCETVLFSVPHLLQQSPDSVEASEFHLANRLDRDTSGVMVITKLHKVAG
Sbjct: 61  WLLVVNKPFGIYCETVLFSVPHLLQQSPDSVEASEFHLANRLDRDTSGVMVITKLHKVAG 120

Query: 170 KLVKAFTDHKVQKTYMALCVGSAPKWDRIRLQSGHGRSKYGAWRVYASSVVGRKLPGGSA 229
           KLVKAFTDHKVQKTYMALCVGSAPKWDRIRLQSGHGRSKYGAWRVYASSVVGRKLPGGSA
Sbjct: 121 KLVKAFTDHKVQKTYMALCVGSAPKWDRIRLQSGHGRSKYGAWRVYASSVVGRKLPGGSA 180

Query: 230 VKHMETLFELLSVNRTVHFIEPSKCAKDQEKTVVVEEKSSTDANQGRDEILVRAFPKSGR 289
           VKHMETLFELLSVNRTVHFIEPSKCAKDQEKTVVVEEKSSTDANQGRDEILVRAFPKSGR
Sbjct: 181 VKHMETLFELLSVNRTVHFIEPSKCAKDQEKTVVVEEKSSTDANQGRDEILVRAFPKSGR 240

Query: 290 THQIRLHCQYLGMPIKGDVKYEGVCEWKGEICDGHTLHAESLSLEHPVTGLPVKFHAPLP 349
           THQIRLHCQYLGMPIKGDVKYEGVCEWKGEICDGHTLHAESLSLEHPVTGLPVKFHAPLP
Sbjct: 241 THQIRLHCQYLGMPIKGDVKYEGVCEWKGEICDGHTLHAESLSLEHPVTGLPVKFHAPLP 300

Query: 350 LWATQAMQSR 360
           LWATQAMQSR
Sbjct: 301 LWATQAMQSR 310

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BLAST of Spo13880.1 vs. NCBI nr
Match: gi|731326746|ref|XP_010674175.1| (PREDICTED: RNA pseudouridine synthase 1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 532.3 bits (1370), Expect = 6.400e-148
Identity = 273/349 (78.22%), Postives = 297/349 (85.10%), Query Frame = 1


		  
Query: 16  LLHPI----KHSLIKLFSQSTPQVSMSSETPEQLNSTSMEETQLANDPKTPSISPYPTPL 75
           LLHPI    K     L  +ST Q+++SS+T  +  STSMEET L NDPK  S S YPTPL
Sbjct: 12  LLHPIPTNFKLLTFSLLPESTQQIAISSKTSNKSYSTSMEETHLTNDPKISSSSQYPTPL 71

Query: 76  SPPLPLISKEIELSRAMSASSKATTFSLSRDDVIFEDQWLLVVNKPFGIYCETVLFSVPH 135
           SPP PL SK+IEL+RAM+ASS+++ FSLSR+DVIFEDQWLLVVNKP GIYCE+VL S PH
Sbjct: 72  SPPFPLYSKQIELNRAMAASSRSSLFSLSRNDVIFEDQWLLVVNKPSGIYCESVLSSAPH 131

Query: 136 LLQQSP--DSVEASEFHLANRLDRDTSGVMVITKLHKVAGKLVKAFTDHKVQKTYMALCV 195
           LLQQS   DSVEASEFHLANRLDRDTSGVMVITKLHKVA KLVKAFTDHKVQKTY+ALC+
Sbjct: 132 LLQQSSSLDSVEASEFHLANRLDRDTSGVMVITKLHKVASKLVKAFTDHKVQKTYIALCI 191

Query: 196 GSAPKWDRIRLQSGHGRSKYGAWRVYASSVVGRKLPGGSAVKHMETLFELLSVNRTVHFI 255
           GSAP WDRIRL+SGHGRSKYGAWRVYA+S VGR LPGGS V+ M+TLFEL   +R VHF 
Sbjct: 192 GSAPNWDRIRLKSGHGRSKYGAWRVYAASDVGRTLPGGSVVRDMDTLFEL---DRVVHFE 251

Query: 256 EPSKCAKDQEKTVVVEEKSSTDANQGRDEILVRAFPKSGRTHQIRLHCQYLGMPIKGDVK 315
           E S+C KDQEKT++VEEKS TDANQGRD ILVRAFPKSGRTHQIRLHCQYLGMPIKGDVK
Sbjct: 252 EASECVKDQEKTIIVEEKSLTDANQGRDVILVRAFPKSGRTHQIRLHCQYLGMPIKGDVK 311

Query: 316 YEGVCEWKGEICDGHTLHAESLSLEHPVTGLPVKFHAPLPLWATQAMQS 359
           YEGV EWKGE CDGH LHAESLSLEHPVTG PV F APLPLWATQAMQS
Sbjct: 312 YEGVGEWKGETCDGHCLHAESLSLEHPVTGRPVLFEAPLPLWATQAMQS 357

[Close]

BLAST of Spo13880.1 vs. NCBI nr
Match: gi|870862644|gb|KMT13832.1| (hypothetical protein BVRB_4g076770 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 514.2 bits (1323), Expect = 1.800e-142
Identity = 257/311 (82.64%), Postives = 275/311 (88.42%), Query Frame = 1


		  
Query: 50  MEETQLANDPKTPSISPYPTPLSPPLPLISKEIELSRAMSASSKATTFSLSRDDVIFEDQ 109
           MEET L NDPK  S S YPTPLSPP PL SK+IEL+RAM+ASS+++ FSLSR+DVIFEDQ
Sbjct: 1   MEETHLTNDPKISSSSQYPTPLSPPFPLYSKQIELNRAMAASSRSSLFSLSRNDVIFEDQ 60

Query: 110 WLLVVNKPFGIYCETVLFSVPHLLQQSP--DSVEASEFHLANRLDRDTSGVMVITKLHKV 169
           WLLVVNKP GIYCE+VL S PHLLQQS   DSVEASEFHLANRLDRDTSGVMVITKLHKV
Sbjct: 61  WLLVVNKPSGIYCESVLSSAPHLLQQSSSLDSVEASEFHLANRLDRDTSGVMVITKLHKV 120

Query: 170 AGKLVKAFTDHKVQKTYMALCVGSAPKWDRIRLQSGHGRSKYGAWRVYASSVVGRKLPGG 229
           A KLVKAFTDHKVQKTY+ALC+GSAP WDRIRL+SGHGRSKYGAWRVYA+S VGR LPGG
Sbjct: 121 ASKLVKAFTDHKVQKTYIALCIGSAPNWDRIRLKSGHGRSKYGAWRVYAASDVGRTLPGG 180

Query: 230 SAVKHMETLFELLSVNRTVHFIEPSKCAKDQEKTVVVEEKSSTDANQGRDEILVRAFPKS 289
           S V+ M+TLFEL   +R VHF E S+C KDQEKT++VEEKS TDANQGRD ILVRAFPKS
Sbjct: 181 SVVRDMDTLFEL---DRVVHFEEASECVKDQEKTIIVEEKSLTDANQGRDVILVRAFPKS 240

Query: 290 GRTHQIRLHCQYLGMPIKGDVKYEGVCEWKGEICDGHTLHAESLSLEHPVTGLPVKFHAP 349
           GRTHQIRLHCQYLGMPIKGDVKYEGV EWKGE CDGH LHAESLSLEHPVTG PV F AP
Sbjct: 241 GRTHQIRLHCQYLGMPIKGDVKYEGVGEWKGETCDGHCLHAESLSLEHPVTGRPVLFEAP 300

Query: 350 LPLWATQAMQS 359
           LPLWATQAMQS
Sbjct: 301 LPLWATQAMQS 308

[Close]

BLAST of Spo13880.1 vs. NCBI nr
Match: gi|645221686|ref|XP_008245928.1| (PREDICTED: RNA pseudouridine synthase 1 [Prunus mume])

HSP 1 Score: 423.3 bits (1087), Expect = 4.200e-115
Identity = 212/320 (66.25%), Postives = 251/320 (78.44%), Query Frame = 1


		  
Query: 43  EQLNSTSMEETQLANDPKTPSISPYPTPLSPPLPLISKEIELSRAMSASSKATTFSLSRD 102
           + +N +S    Q++ +        YP PLSPPLP ISK IEL+RAMSASSK++ FSLSRD
Sbjct: 6   DAINPSSQNALQISQN--------YPVPLSPPLPPISKHIELARAMSASSKSSLFSLSRD 65

Query: 103 DVIFEDQWLLVVNKPFGIYCETVLFSVPHLLQQSPDSVEAS-----EFHLANRLDRDTSG 162
           DV+FEDQWL+VVNKP G+YCE+VL SVP LL  S +SV  +     E HLANRLDRDTSG
Sbjct: 66  DVVFEDQWLIVVNKPQGVYCESVLESVPQLLCDSAESVAGTPANQLELHLANRLDRDTSG 125

Query: 163 VMVITKLHKVAGKLVKAFTDHKVQKTYMALCVGSAPKWDRIRLQSGHGRSKYGAWRVYAS 222
           +MVITK HKVA KLVKAFTDHK+ KTY+A C+GSAPKW+RI L+SGHGRSK+GAWRVYA+
Sbjct: 126 LMVITKSHKVASKLVKAFTDHKISKTYIARCIGSAPKWERITLKSGHGRSKFGAWRVYAA 185

Query: 223 SVVGRKLPGGSAVKHMETLFELLSVNRTVHFIEPSKCAKDQEKTVVVEEKSSTDANQGRD 282
           S VGR LPGGS V+ MET FE+LS+N      EPS+  KD+  TVVV+EK+  D +  +D
Sbjct: 186 SDVGRTLPGGSMVRDMETSFEVLSINGQGSLKEPSEFKKDEANTVVVQEKAVIDKDTKKD 245

Query: 283 EILVRAFPKSGRTHQIRLHCQYLGMPIKGDVKYEGVCEWKGEICDGHTLHAESLSLEHPV 342
           EILVRA P+SGRTHQIRLHCQYLG+ I+GDVKYEGV EWKG   DGH LHAESLS EHP+
Sbjct: 246 EILVRARPRSGRTHQIRLHCQYLGISIRGDVKYEGVYEWKGRTYDGHELHAESLSFEHPI 305

Query: 343 TGLPVKFHAPLPLWATQAMQ 358
           TGLPV F AP+P WA+QA+Q
Sbjct: 306 TGLPVMFQAPVPSWASQALQ 317

[Close]

BLAST of Spo13880.1 vs. NCBI nr
Match: gi|595826525|ref|XP_007205588.1| (hypothetical protein PRUPE_ppa008866mg [Prunus persica])

HSP 1 Score: 422.2 bits (1084), Expect = 9.300e-115
Identity = 207/294 (70.41%), Postives = 240/294 (81.63%), Query Frame = 1


		  
Query: 67  YPTPLSPPLPLISKEIELSRAMSASSKATTFSLSRDDVIFEDQWLLVVNKPFGIYCETVL 126
           YP PLSPPLP ISK IEL+RAMSASSK++ FSLSRDDV+FEDQWL+VVNKP G+YCE+VL
Sbjct: 22  YPVPLSPPLPPISKHIELARAMSASSKSSLFSLSRDDVVFEDQWLIVVNKPQGVYCESVL 81

Query: 127 FSVPHLLQQSPDS---VEASEFHLANRLDRDTSGVMVITKLHKVAGKLVKAFTDHKVQKT 186
            SVP LL  S +S       E HLANRLDRDTSG+MVITK HKVA KLVKAFTDHK+ KT
Sbjct: 82  ESVPQLLCDSAESGTPANQLELHLANRLDRDTSGLMVITKSHKVASKLVKAFTDHKISKT 141

Query: 187 YMALCVGSAPKWDRIRLQSGHGRSKYGAWRVYASSVVGRKLPGGSAVKHMETLFELLSVN 246
           Y+A C+GSAPKW+RI L+SGHGRSK+GAWRVYA+S VGR LPGGS V+ MET FE+LS+N
Sbjct: 142 YIARCIGSAPKWERITLKSGHGRSKFGAWRVYAASDVGRTLPGGSMVRDMETSFEVLSIN 201

Query: 247 RTVHFIEPSKCAKDQEKTVVVEEKSSTDANQGRDEILVRAFPKSGRTHQIRLHCQYLGMP 306
                 EPS+  KD+  T+VV+EK+  D +  +DEILVRA P+SGRTHQIRLHCQYLG+ 
Sbjct: 202 GQGSLKEPSEFKKDEANTIVVQEKAVIDKDTKKDEILVRARPRSGRTHQIRLHCQYLGIS 261

Query: 307 IKGDVKYEGVCEWKGEICDGHTLHAESLSLEHPVTGLPVKFHAPLPLWATQAMQ 358
           I+GDVKYEGV EWKG   DGH LHAESLS EHP+TGLPV F AP+P WA+QA+Q
Sbjct: 262 IRGDVKYEGVYEWKGRTYDGHELHAESLSFEHPITGLPVMFQAPVPSWASQALQ 315

[Close]

BLAST of Spo13880.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QF49_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_186260 PE=4 SV=1)

HSP 1 Score: 629.8 bits (1623), Expect = 2.000e-177
Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 1


		  
Query: 50  MEETQLANDPKTPSISPYPTPLSPPLPLISKEIELSRAMSASSKATTFSLSRDDVIFEDQ 109
           MEETQLANDPKTPSISPYPTPLSPPLPLISKEIELSRAMSASSKATTFSLSRDDVIFEDQ
Sbjct: 1   MEETQLANDPKTPSISPYPTPLSPPLPLISKEIELSRAMSASSKATTFSLSRDDVIFEDQ 60

Query: 110 WLLVVNKPFGIYCETVLFSVPHLLQQSPDSVEASEFHLANRLDRDTSGVMVITKLHKVAG 169
           WLLVVNKPFGIYCETVLFSVPHLLQQSPDSVEASEFHLANRLDRDTSGVMVITKLHKVAG
Sbjct: 61  WLLVVNKPFGIYCETVLFSVPHLLQQSPDSVEASEFHLANRLDRDTSGVMVITKLHKVAG 120

Query: 170 KLVKAFTDHKVQKTYMALCVGSAPKWDRIRLQSGHGRSKYGAWRVYASSVVGRKLPGGSA 229
           KLVKAFTDHKVQKTYMALCVGSAPKWDRIRLQSGHGRSKYGAWRVYASSVVGRKLPGGSA
Sbjct: 121 KLVKAFTDHKVQKTYMALCVGSAPKWDRIRLQSGHGRSKYGAWRVYASSVVGRKLPGGSA 180

Query: 230 VKHMETLFELLSVNRTVHFIEPSKCAKDQEKTVVVEEKSSTDANQGRDEILVRAFPKSGR 289
           VKHMETLFELLSVNRTVHFIEPSKCAKDQEKTVVVEEKSSTDANQGRDEILVRAFPKSGR
Sbjct: 181 VKHMETLFELLSVNRTVHFIEPSKCAKDQEKTVVVEEKSSTDANQGRDEILVRAFPKSGR 240

Query: 290 THQIRLHCQYLGMPIKGDVKYEGVCEWKGEICDGHTLHAESLSLEHPVTGLPVKFHAPLP 349
           THQIRLHCQYLGMPIKGDVKYEGVCEWKGEICDGHTLHAESLSLEHPVTGLPVKFHAPLP
Sbjct: 241 THQIRLHCQYLGMPIKGDVKYEGVCEWKGEICDGHTLHAESLSLEHPVTGLPVKFHAPLP 300

Query: 350 LWATQAMQSR 360
           LWATQAMQSR
Sbjct: 301 LWATQAMQSR 310

[Close]

BLAST of Spo13880.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CJV8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g076770 PE=4 SV=1)

HSP 1 Score: 514.2 bits (1323), Expect = 1.300e-142
Identity = 257/311 (82.64%), Postives = 275/311 (88.42%), Query Frame = 1


		  
Query: 50  MEETQLANDPKTPSISPYPTPLSPPLPLISKEIELSRAMSASSKATTFSLSRDDVIFEDQ 109
           MEET L NDPK  S S YPTPLSPP PL SK+IEL+RAM+ASS+++ FSLSR+DVIFEDQ
Sbjct: 1   MEETHLTNDPKISSSSQYPTPLSPPFPLYSKQIELNRAMAASSRSSLFSLSRNDVIFEDQ 60

Query: 110 WLLVVNKPFGIYCETVLFSVPHLLQQSP--DSVEASEFHLANRLDRDTSGVMVITKLHKV 169
           WLLVVNKP GIYCE+VL S PHLLQQS   DSVEASEFHLANRLDRDTSGVMVITKLHKV
Sbjct: 61  WLLVVNKPSGIYCESVLSSAPHLLQQSSSLDSVEASEFHLANRLDRDTSGVMVITKLHKV 120

Query: 170 AGKLVKAFTDHKVQKTYMALCVGSAPKWDRIRLQSGHGRSKYGAWRVYASSVVGRKLPGG 229
           A KLVKAFTDHKVQKTY+ALC+GSAP WDRIRL+SGHGRSKYGAWRVYA+S VGR LPGG
Sbjct: 121 ASKLVKAFTDHKVQKTYIALCIGSAPNWDRIRLKSGHGRSKYGAWRVYAASDVGRTLPGG 180

Query: 230 SAVKHMETLFELLSVNRTVHFIEPSKCAKDQEKTVVVEEKSSTDANQGRDEILVRAFPKS 289
           S V+ M+TLFEL   +R VHF E S+C KDQEKT++VEEKS TDANQGRD ILVRAFPKS
Sbjct: 181 SVVRDMDTLFEL---DRVVHFEEASECVKDQEKTIIVEEKSLTDANQGRDVILVRAFPKS 240

Query: 290 GRTHQIRLHCQYLGMPIKGDVKYEGVCEWKGEICDGHTLHAESLSLEHPVTGLPVKFHAP 349
           GRTHQIRLHCQYLGMPIKGDVKYEGV EWKGE CDGH LHAESLSLEHPVTG PV F AP
Sbjct: 241 GRTHQIRLHCQYLGMPIKGDVKYEGVGEWKGETCDGHCLHAESLSLEHPVTGRPVLFEAP 300

Query: 350 LPLWATQAMQS 359
           LPLWATQAMQS
Sbjct: 301 LPLWATQAMQS 308

[Close]

BLAST of Spo13880.1 vs. UniProtKB/TrEMBL
Match: M5VZ97_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008866mg PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 6.500e-115
Identity = 207/294 (70.41%), Postives = 240/294 (81.63%), Query Frame = 1


		  
Query: 67  YPTPLSPPLPLISKEIELSRAMSASSKATTFSLSRDDVIFEDQWLLVVNKPFGIYCETVL 126
           YP PLSPPLP ISK IEL+RAMSASSK++ FSLSRDDV+FEDQWL+VVNKP G+YCE+VL
Sbjct: 22  YPVPLSPPLPPISKHIELARAMSASSKSSLFSLSRDDVVFEDQWLIVVNKPQGVYCESVL 81

Query: 127 FSVPHLLQQSPDS---VEASEFHLANRLDRDTSGVMVITKLHKVAGKLVKAFTDHKVQKT 186
            SVP LL  S +S       E HLANRLDRDTSG+MVITK HKVA KLVKAFTDHK+ KT
Sbjct: 82  ESVPQLLCDSAESGTPANQLELHLANRLDRDTSGLMVITKSHKVASKLVKAFTDHKISKT 141

Query: 187 YMALCVGSAPKWDRIRLQSGHGRSKYGAWRVYASSVVGRKLPGGSAVKHMETLFELLSVN 246
           Y+A C+GSAPKW+RI L+SGHGRSK+GAWRVYA+S VGR LPGGS V+ MET FE+LS+N
Sbjct: 142 YIARCIGSAPKWERITLKSGHGRSKFGAWRVYAASDVGRTLPGGSMVRDMETSFEVLSIN 201

Query: 247 RTVHFIEPSKCAKDQEKTVVVEEKSSTDANQGRDEILVRAFPKSGRTHQIRLHCQYLGMP 306
                 EPS+  KD+  T+VV+EK+  D +  +DEILVRA P+SGRTHQIRLHCQYLG+ 
Sbjct: 202 GQGSLKEPSEFKKDEANTIVVQEKAVIDKDTKKDEILVRARPRSGRTHQIRLHCQYLGIS 261

Query: 307 IKGDVKYEGVCEWKGEICDGHTLHAESLSLEHPVTGLPVKFHAPLPLWATQAMQ 358
           I+GDVKYEGV EWKG   DGH LHAESLS EHP+TGLPV F AP+P WA+QA+Q
Sbjct: 262 IRGDVKYEGVYEWKGRTYDGHELHAESLSFEHPITGLPVMFQAPVPSWASQALQ 315

[Close]

BLAST of Spo13880.1 vs. UniProtKB/TrEMBL
Match: A0A0D2R302_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G236900 PE=4 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 3.600e-113
Identity = 201/303 (66.34%), Postives = 241/303 (79.54%), Query Frame = 1


		  
Query: 63  SISPYPTPLSPPLPLISKEIELSRAMSASSKATTFSLSRDDVIFEDQWLLVVNKPFGIYC 122
           S+  YPTPLSPPLP ISK+IEL+RAMSASSK++ F LSR D+++ED+WL+ VNKP GIYC
Sbjct: 43  SLQNYPTPLSPPLPSISKDIELARAMSASSKSSLFGLSRSDILYEDEWLIAVNKPQGIYC 102

Query: 123 ETVLFSVPHLLQQSPDS--------VEASEFHLANRLDRDTSGVMVITKLHKVAGKLVKA 182
           +T+L SVP  L  S  S            E HLANRLDRDTSGVMVITK HKVA  LVKA
Sbjct: 103 DTILASVPRFLSGSAPSDRLCEGNQASTLELHLANRLDRDTSGVMVITKSHKVASVLVKA 162

Query: 183 FTDHKVQKTYMALCVGSAPKWDRIRLQSGHGRSKYGAWRVYASSVVGRKLPGGSAVKHME 242
           FT+HKVQKTY+A C+GSAPK +RI ++SGHGRSK+GAWRVYA+  VGRKLPGGS V+ ME
Sbjct: 163 FTNHKVQKTYVAFCIGSAPKSERITIKSGHGRSKFGAWRVYAAGDVGRKLPGGSIVRDME 222

Query: 243 TLFELLSVNRTVHFIEPSKCAKDQEKTVVVEEKSSTDANQGRDEILVRAFPKSGRTHQIR 302
           T FE+LS+N   ++ E S+C +D+E ++VVEEK+ TD +  +DEILVRAFP+SGRTHQIR
Sbjct: 223 TTFEVLSINGQQNYKEQSECMEDEEHSIVVEEKAVTDVDANKDEILVRAFPRSGRTHQIR 282

Query: 303 LHCQYLGMPIKGDVKYEGVCEWKGEICDGHTLHAESLSLEHPVTGLPVKFHAPLPLWATQ 358
           LHCQYLG PI+GDVKYEGV EWKG   D H LHAESL+ +HPVTG P+   APLPLWA+Q
Sbjct: 283 LHCQYLGFPIRGDVKYEGVYEWKGRTYDAHELHAESLTFQHPVTGFPLLIQAPLPLWASQ 342

[Close]

BLAST of Spo13880.1 vs. UniProtKB/TrEMBL
Match: B9RFI4_RICCO (Ribosomal pseudouridine synthase, putative OS=Ricinus communis GN=RCOM_1434890 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 9.700e-111
Identity = 211/327 (64.53%), Postives = 251/327 (76.76%), Query Frame = 1


		  
Query: 39  SETPEQLNSTSMEETQLANDPKTPSISPYPTPLSPPLPLISKEIELSRAMSASSKATTFS 98
           S  P  +N TS       NDP T  +  YPTPLSPPLP ISK+IEL+RA+SASS+++ F+
Sbjct: 2   SSPPGNINPTSQ------NDPLT--LQNYPTPLSPPLPSISKQIELARALSASSRSSLFT 61

Query: 99  LSRDDVIFEDQWLLVVNKPFGIYCETVLFSVPHLLQQSPDSVEAS--------EFHLANR 158
           LSR DV++EDQWL+ VNKP G+YCETVL SVP +L  S +  + S        EFHLANR
Sbjct: 62  LSRSDVLYEDQWLIAVNKPQGVYCETVLESVPRVLAASAELTDPSEGAEGNPHEFHLANR 121

Query: 159 LDRDTSGVMVITKLHKVAGKLVKAFTDHKVQKTYMALCVGSAPKWDRIRLQSGHGRSKYG 218
           LDRDTSGVMVITK HKVA KLVKAFTDHK++KTY+ALC+G APKW++I ++SGHGRSK+G
Sbjct: 122 LDRDTSGVMVITKSHKVASKLVKAFTDHKIKKTYIALCIGLAPKWEKITIKSGHGRSKFG 181

Query: 219 AWRVYASSVVGRKLPGGSAVKHMETLFELLSVNRTVHFIEPSKCAKDQEKTVVVEEKSST 278
            WRVYA+S VG+ LPGGS VK MET FELLSVN    F E S+  KD E  +VVEEK++ 
Sbjct: 182 VWRVYAASDVGQTLPGGSTVKDMETSFELLSVNGQGSFKELSEFEKD-ENILVVEEKAAK 241

Query: 279 DANQGRDEILVRAFPKSGRTHQIRLHCQYLGMPIKGDVKYEGVCEWKGEICDGHTLHAES 338
           +A+  + EILVRAFP+SGRTHQIRLHCQYLG+ I+GDVKYEGV EW+G   DGH LHAE+
Sbjct: 242 NADVKKVEILVRAFPQSGRTHQIRLHCQYLGISIRGDVKYEGVYEWEGRTYDGHELHAET 301

Query: 339 LSLEHPVTGLPVKFHAPLPLWATQAMQ 358
           LS EHPVTG+PV   APLP WA QA Q
Sbjct: 302 LSFEHPVTGVPVMLRAPLPSWAIQASQ 319

[Close]

BLAST of Spo13880.1 vs. ExPASy Swiss-Prot
Match: PUS1_ORYSJ (RNA pseudouridine synthase 1 OS=Oryza sativa subsp. japonica GN=Os12g0560500 PE=2 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 1.500e-96
Identity = 170/291 (58.42%), Postives = 216/291 (74.23%), Query Frame = 1


		  
Query: 67  YPTPLSPPLPLISKEIELSRAMSASSKATTFSLSRDDVIFEDQWLLVVNKPFGIYCETVL 126
           YP P+SPP P  SK++EL RAM+AS+++  +S +   V+FED+WL VV+KP G+YC+ +L
Sbjct: 51  YPVPVSPPYPAASKDVELRRAMTASARSAAYSSA--PVVFEDEWLAVVDKPAGVYCDALL 110

Query: 127 FSVPHLLQQSPDSVEASEFHLANRLDRDTSGVMVITKLHKVAGKLVKAFTDHKVQKTYMA 186
            ++P       D       HLANRLDRDTSG+MVITK +KVAGKLVKAFT+HKV+KTY+A
Sbjct: 111 SALPCSAATLGDEATKPNLHLANRLDRDTSGLMVITKCNKVAGKLVKAFTEHKVKKTYLA 170

Query: 187 LCVGSAPKWDRIRLQSGHGRSKYGAWRVYASSVVGRKLPGGSAVKHMETLFELLSVNRTV 246
           LC+G  P W++I++ SGHGRSK+GAWRVYA S VGR LPGGS V+ M T FE+L +N   
Sbjct: 171 LCIGYPPAWEKIKICSGHGRSKHGAWRVYAMSDVGRSLPGGSVVRDMSTRFEVLGINGKG 230

Query: 247 HFIEPSKCAKDQEKTVVVEEKS---STDANQGRDEILVRAFPKSGRTHQIRLHCQYLGMP 306
            F EPS    D+ +++ V+EK+   ++D ++    ILVRA+P+SGRTHQIRLHCQYLG P
Sbjct: 231 QFREPSNFEVDETESITVQEKAADLTSDGDEKNSIILVRAYPQSGRTHQIRLHCQYLGFP 290

Query: 307 IKGDVKYEGVCEWKGEICDGHTLHAESLSLEHPVTGLPVKFHAPLPLWATQ 355
           I+GDVKY GV EW G   DGH LHAESLS  HPVTGLPV F +PLP WA +
Sbjct: 291 IRGDVKYSGVIEWNGVDYDGHALHAESLSFVHPVTGLPVTFRSPLPSWANE 339

[Close]

BLAST of Spo13880.1 vs. ExPASy Swiss-Prot
Match: PUS1_ARATH (RNA pseudouridine synthase 1 OS=Arabidopsis thaliana GN=At1g56345 PE=2 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 4.800e-95
Identity = 171/289 (59.17%), Postives = 217/289 (75.09%), Query Frame = 1


		  
Query: 67  YPTPLSPPLPLISKEIELSRAMSASSKATTFSLSRDDVIFEDQWLLVVNKPFGIYCETVL 126
           YP P+S P P ISK+IEL RAM ASSK++ F+L+RDD+++ED++L+ VNKP G+YCE VL
Sbjct: 40  YPKPISAPPPPISKDIELRRAMEASSKSSLFNLTRDDILYEDEYLMAVNKPKGVYCEAVL 99

Query: 127 FSVPHLLQQSPDSVEASEFHLANRLDRDTSGVMVITKLHKVAGKLVKAFTDHKVQKTYMA 186
            S P ++  S     +SE+HLANRLDRDTSGVM+ITK HKVA KLVKAFT+HK++K+Y+A
Sbjct: 100 RSAPQIVLDS-----SSEYHLANRLDRDTSGVMIITKSHKVAAKLVKAFTEHKIRKSYIA 159

Query: 187 LCVGSAPKWDRIRLQSGHGRSKYGAWRVYASSVVGRKLPGGSAVKHMETLFELLSVNRTV 246
           LC+GS+P W R+ + SGHGRSK+GAWRVYA+  VGR LPGGS V+ MET FE++SVN   
Sbjct: 160 LCIGSSPNWRRVTVSSGHGRSKHGAWRVYAALDVGRVLPGGSFVRDMETTFEVVSVNS-- 219

Query: 247 HFIEPSKCAKDQEKTVVVEEKSSTDANQGRDE---ILVRAFPKSGRTHQIRLHCQYLGMP 306
             ++   C  +    V+V E     +  G D+   ++VRAFP+SGRTHQIRLHCQYLG+P
Sbjct: 220 --VKNESCELEDVNHVIVAEGERELSCGGDDDDVVVVVRAFPRSGRTHQIRLHCQYLGIP 279

Query: 307 IKGDVKYEGVCEWKGEICDGHTLHAESLSLEHPVTGLPVKFHAPLPLWA 353
           I+GDVKY GV EW G   +GH LHAE LSL+HPVTG  +   APLP WA
Sbjct: 280 IRGDVKYHGVYEWNGRTFEGHELHAECLSLDHPVTGDSIVIRAPLPYWA 319

[Close]

BLAST of Spo13880.1 vs. ExPASy Swiss-Prot
Match: RLUC_PASMU (Ribosomal large subunit pseudouridine synthase C OS=Pasteurella multocida (strain Pm70) GN=rluC PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.900e-17
Identity = 90/284 (31.69%), Postives = 121/284 (42.61%), Query Frame = 1


		  
Query: 73  PPLPLISKEIELSRAMSASSKATTFSLSRDDVIFEDQWLLVVNKPFGIYCET---VLFSV 132
           PP+ +  KE         S+K    S     ++FED+ LLV+NKP GI       + F V
Sbjct: 75  PPVRVSEKE-----HAPISTKLNKVSQLEKQILFEDECLLVLNKPSGIAVHGGSGLSFGV 134

Query: 133 PHLLQQ-SPDSVEASEFHLANRLDRDTSGVMVITKLHKVAGKLVKAFTDHKVQKTYMALC 192
              L+   PD   A    L +RLDRDTSG++++ K       L +   +  VQK Y+AL 
Sbjct: 135 IEALRTLRPD---ARFLELVHRLDRDTSGILLVAKKRSALRSLHEQLREKTVQKDYLALV 194

Query: 193 VGSAPKWDRIRLQSGHGRSKYGAWRVYASSVVGRKLPGGSAVKHMETLFELLSVNRTVHF 252
                                G W+ +   V    L             EL S  R V  
Sbjct: 195 --------------------RGQWQSHCKVVKAPLLKN-----------ELSSGERIVRV 254

Query: 253 IEPSKCAKDQEKTVVVEEKSSTDANQGRDEILVRAFPKSGRTHQIRLHCQYLGMPIKGDV 312
            E  K     E    +EE+            LV+A P +GRTHQIR+H QY G PI  D 
Sbjct: 255 SEQGK---PSETRFSIEERYEYAT-------LVKASPVTGRTHQIRVHTQYAGHPIALDD 308

Query: 313 KYEGVCEWKGEICD-GHT---LHAESLSLEHPVTGLPVKFHAPL 349
           KY G   +  ++   G T   LHA S+  EHP TG  ++ +APL
Sbjct: 315 KY-GDKHFDEQMTQLGLTRLFLHAFSIRFEHPKTGETLRINAPL 308

[Close]

BLAST of Spo13880.1 vs. ExPASy Swiss-Prot
Match: RLUD_VIBVU (Ribosomal large subunit pseudouridine synthase D OS=Vibrio vulnificus (strain CMCP6) GN=rluD PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.000e-16
Identity = 75/265 (28.30%), Postives = 110/265 (41.51%), Query Frame = 1


		  
Query: 103 DVIFEDQWLLVVNKP--------FGIYCETVLFSVPHLLQQSPDSVEASEFHLANRLDRD 162
           D+++ED  +LV+NKP         G    TVL +   LL   P+  E     + +RLD+D
Sbjct: 85  DIVYEDDDILVINKPRDFVVHPGAGTPDGTVLNA---LLFHCPEVAEVPRAGIVHRLDKD 144

Query: 163 TSGVMVITKLHKVAGKLVKAFTDHKVQKTYMALCVGSAPKWDRIRLQSGHGRSKYGAWRV 222
           T+G+MV+ K      +LV+A     + + Y A+ +G                      R+
Sbjct: 145 TTGLMVVAKTVPAQTRLVRALQKRNITREYEAIAIG----------------------RM 204

Query: 223 YASSVVGRKLPGGSAVKHMETLFELLSVNRTVHFIEPSKCAKDQEKTVVVEEKSSTDANQ 282
            A   V + + G  A K            RT+  + P        K  V   +    A  
Sbjct: 205 TAGGKVDKPI-GRHATK------------RTLMAVSP------MGKPAVTHFRV---AEH 264

Query: 283 GRDEILVRAFPKSGRTHQIRLHCQYLGMPIKGDVKYEGVCEWKGEIC----------DGH 342
            R+   +R   ++GRTHQIR+H  YL  P+ GD  Y G                   D  
Sbjct: 265 FREHTRIRLRLETGRTHQIRVHMSYLQHPLLGDAAYGGRARIPAGASEDVTAMIRNFDRQ 302

Query: 343 TLHAESLSLEHPVTGLPVKFHAPLP 350
            LHA  L  EHP+TG  ++FHAP+P
Sbjct: 325 ALHAVMLRFEHPITGEEMEFHAPVP 302

[Close]

BLAST of Spo13880.1 vs. ExPASy Swiss-Prot
Match: RLUD_VIBPA (Ribosomal large subunit pseudouridine synthase D OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rluD PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.400e-16
Identity = 75/265 (28.30%), Postives = 109/265 (41.13%), Query Frame = 1


		  
Query: 103 DVIFEDQWLLVVNKP--------FGIYCETVLFSVPHLLQQSPDSVEASEFHLANRLDRD 162
           D+++ED  ++V+NKP         G    TVL +   LL   PD  E     + +RLD+D
Sbjct: 85  DIVYEDDDIIVINKPRDFVVHPGAGTPDGTVLNA---LLHHYPDIAEVPRAGIVHRLDKD 144

Query: 163 TSGVMVITKLHKVAGKLVKAFTDHKVQKTYMALCVGSAPKWDRIRLQSGHGRSKYGAWRV 222
           T+G+MV+ K      +LV+A     + + Y A+ +                         
Sbjct: 145 TTGLMVVAKTVPAQTRLVRALQKRNITREYEAIAI------------------------- 204

Query: 223 YASSVVGRKLPGGSAVKHMETLFELLSVNRTVHFIEPSKCAKDQEKTVVVEEKSSTDANQ 282
                 GR   GG     ++      S  RT+  + P        K  V   +    A  
Sbjct: 205 ------GRMTAGGK----VDQPIGRHSTKRTLMAVAPLG------KPAVTHYRV---AEH 264

Query: 283 GRDEILVRAFPKSGRTHQIRLHCQYLGMPIKGDVKYEGVC--------EWKGEI--CDGH 342
            R+   +R   ++GRTHQIR+H  YL  P+ GD  Y G          E    I   D  
Sbjct: 265 FREHTRIRLRLETGRTHQIRVHMSYLQHPLLGDTAYGGRARIPTGASQELTDMIRGFDRQ 302

Query: 343 TLHAESLSLEHPVTGLPVKFHAPLP 350
            LHA  L  EHP+TG  ++FHAP+P
Sbjct: 325 ALHAVMLRFEHPITGEELEFHAPVP 302

[Close]

BLAST of Spo13880.1 vs. TAIR (Arabidopsis)
Match: AT1G56345.1 (Pseudouridine synthase family protein)

HSP 1 Score: 349.4 bits (895), Expect = 2.700e-96
Identity = 171/289 (59.17%), Postives = 217/289 (75.09%), Query Frame = 1


		  
Query: 67  YPTPLSPPLPLISKEIELSRAMSASSKATTFSLSRDDVIFEDQWLLVVNKPFGIYCETVL 126
           YP P+S P P ISK+IEL RAM ASSK++ F+L+RDD+++ED++L+ VNKP G+YCE VL
Sbjct: 40  YPKPISAPPPPISKDIELRRAMEASSKSSLFNLTRDDILYEDEYLMAVNKPKGVYCEAVL 99

Query: 127 FSVPHLLQQSPDSVEASEFHLANRLDRDTSGVMVITKLHKVAGKLVKAFTDHKVQKTYMA 186
            S P ++  S     +SE+HLANRLDRDTSGVM+ITK HKVA KLVKAFT+HK++K+Y+A
Sbjct: 100 RSAPQIVLDS-----SSEYHLANRLDRDTSGVMIITKSHKVAAKLVKAFTEHKIRKSYIA 159

Query: 187 LCVGSAPKWDRIRLQSGHGRSKYGAWRVYASSVVGRKLPGGSAVKHMETLFELLSVNRTV 246
           LC+GS+P W R+ + SGHGRSK+GAWRVYA+  VGR LPGGS V+ MET FE++SVN   
Sbjct: 160 LCIGSSPNWRRVTVSSGHGRSKHGAWRVYAALDVGRVLPGGSFVRDMETTFEVVSVNS-- 219

Query: 247 HFIEPSKCAKDQEKTVVVEEKSSTDANQGRDE---ILVRAFPKSGRTHQIRLHCQYLGMP 306
             ++   C  +    V+V E     +  G D+   ++VRAFP+SGRTHQIRLHCQYLG+P
Sbjct: 220 --VKNESCELEDVNHVIVAEGERELSCGGDDDDVVVVVRAFPRSGRTHQIRLHCQYLGIP 279

Query: 307 IKGDVKYEGVCEWKGEICDGHTLHAESLSLEHPVTGLPVKFHAPLPLWA 353
           I+GDVKY GV EW G   +GH LHAE LSL+HPVTG  +   APLP WA
Sbjct: 280 IRGDVKYHGVYEWNGRTFEGHELHAECLSLDHPVTGDSIVIRAPLPYWA 319

[Close]

BLAST of Spo13880.1 vs. TAIR (Arabidopsis)
Match: AT1G76050.2 (Pseudouridine synthase family protein)

HSP 1 Score: 62.8 bits (151), Expect = 5.100e-10
Identity = 61/246 (24.80%), Postives = 94/246 (38.21%), Query Frame = 1


		  
Query: 127 FSVPHLLQQSPDSVEAS-EFHLANRLDRDTSGVMVITKLHKVAGKLVKAFTDHKVQKTYM 186
           FS    +  SP S  AS    + +RLD+ T+G++V+ K       L + F  H +++ Y+
Sbjct: 208 FSDDEEMTTSPSSYAASVRPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHTIERVYV 267

Query: 187 ALCVGSAPKWDRIRLQSGHGRSKYGAWRVYASSVVGRKLPGG---SAVKHMETLFELLSV 246
           +L  G              GR +    R  ++ +    +PGG      +H  + ++++  
Sbjct: 268 SLTTGVP--------SPPQGRIEIPIGRDSSNRIRMAAIPGGVRGGRARHAASRYKVI-- 327

Query: 247 NRTVHFIEPSKCAKDQEKTVVVEEKSSTDANQGRDEILVRAFPKSGRTHQIRLHCQYLGM 306
                                       +   G    LV    ++GRTHQIR H +Y+G+
Sbjct: 328 ----------------------------ETFAGGGSALVEWRLETGRTHQIRAHAKYMGV 387

Query: 307 PIKGDVKYEGVCEW-------------KGEI------CDGHTLHAESLSLEHPVTGLPVK 350
           P+ GD  Y G                 + EI       D   LHA  L   HP TG  VK
Sbjct: 388 PLLGDEVYGGTKSMALSLLQKRVSRSDQEEIIELISRMDRPCLHAIVLGFTHPCTGEIVK 415

The following BLAST results are available for this feature:

BLAST of Spo13880.1 vs. NCBI nr
BLAST of Spo13880.1 vs. UniProtKB/TrEMBL
BLAST of Spo13880.1 vs. ExPASy Swiss-Prot
BLAST of Spo13880.1 vs. TAIR (Arabidopsis)

BLAST of Spo13880.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902155274\|gb\|KNA05885.1\|	2.9e-177	100.	hypothetical protein SOVF_1862...	[more]
gi\|731326746\|ref\|XP_010674175.1\|	6.4e-148	78.2	PREDICTED: RNA pseudouridine s...	[more]
gi\|870862644\|gb\|KMT13832.1\|	1.8e-142	82.6	hypothetical protein BVRB_4g07...	[more]
gi\|645221686\|ref\|XP_008245928.1\|	4.2e-115	66.2	PREDICTED: RNA pseudouridine s...	[more]
gi\|595826525\|ref\|XP_007205588.1\|	9.3e-115	70.4	hypothetical protein PRUPE_ppa...	[more]

BLAST of Spo13880.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QF49_SPIOL	2.0e-177	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CJV8_BETVU	1.3e-142	82.6	Uncharacterized protein OS=Bet...	[more]
M5VZ97_PRUPE	6.5e-115	70.4	Uncharacterized protein OS=Pru...	[more]
A0A0D2R302_GOSRA	3.6e-113	66.3	Uncharacterized protein OS=Gos...	[more]
B9RFI4_RICCO	9.7e-111	64.5	Ribosomal pseudouridine syntha...	[more]

BLAST of Spo13880.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
PUS1_ORYSJ	1.5e-96	58.4	RNA pseudouridine synthase 1 O...	[more]
PUS1_ARATH	4.8e-95	59.1	RNA pseudouridine synthase 1 O...	[more]
RLUC_PASMU	6.9e-17	31.6	Ribosomal large subunit pseudo...	[more]
RLUD_VIBVU	2.0e-16	28.3	Ribosomal large subunit pseudo...	[more]
RLUD_VIBPA	3.4e-16	28.3	Ribosomal large subunit pseudo...	[more]

BLAST of Spo13880.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT1G56345.1	2.7e-96	59.1	Pseudouridine synthase family ...	[more]
AT1G76050.2	5.1e-10	24.8	Pseudouridine synthase family ...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006145	Pseudouridine synthase, RsuA/RluB/C/D/E/F	PFAM	PF00849	PseudoU_synth_2	coord: 111..298 score: 3.4
IPR006224	Pseudouridine synthase, RluC/RluD, conserved site	PROSITE	PS01129	PSI_RLU	coord: 148..162 scor
IPR020103	Pseudouridine synthase, catalytic domain	unknown	SSF55120	Pseudouridine synthase	coord: 102..242 score: 9.92E-44coord: 275..356 score: 9.92
None	No IPR available	PANTHER	PTHR11079	CYTOSINE DEAMINASE	coord: 76..82 score: 1.5E-130coord: 274..357 score: 1.5E-130coord: 103..241 score: 1.5E
None	No IPR available	PANTHER	PTHR11079:SF82	RNA PSEUDOURIDINE SYNTHASE 1	coord: 76..82 score: 1.5E-130coord: 103..241 score: 1.5E-130coord: 274..357 score: 1.5E

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006457	protein folding
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0048608	reproductive structure development
biological_process	GO:0022414	reproductive process
biological_process	GO:0080090	regulation of primary metabolic process
biological_process	GO:0060255	regulation of macromolecule metabolic process
biological_process	GO:0031323	regulation of cellular metabolic process
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0009657	plastid organization
biological_process	GO:0015979	photosynthesis
biological_process	GO:0034660	ncRNA metabolic process
biological_process	GO:0009987	cellular process
biological_process	GO:0022607	cellular component assembly
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0009408	response to heat
biological_process	GO:0034976	response to endoplasmic reticulum stress
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003796	lysozyme activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0005525	GTP binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo04665	0.66	Barchart \| Table