Spo13900 (gene)

Overview
NameSpo13900
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionDNA-directed RNA polymerase (2.7.7.6)
LocationSpoScf_00215 : 230078 .. 233887 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCTAGTCTTGCTTGGGGTTTCGATTTGGGGGTTTTCTTGGTATAAGCTTATTCAAATTTCTCTCTTCATGTTCCGAAATTTTGGTTATTTTCCATGATTTACAAGGTTAGATATTAGGTTTTCTAAATTATTTTCTGATTTAGGTTTTGATTTTAATTTAATAATTAGCAATAATATGATCGAGTTTTAGTTTTCTTGGGTTGAGAATTTTAGTGAGATGCTTTTGCGACAATAATATGATTTTAATTTTTGTAATTAGCAATAAGATGATCGAGTTTTTTTATTGTATATTTGAATCTATTTTCTTCAATATCTATTGCTCGGTGGTAGTGTTTGTTCATGTTAAATTTGTGGTCTTATTGCTTGATTCGTTCTCTGTTTCTTTTTGCATTAAGTTTTTAGTTTAATAATACTTTTATTATCTTATGATTTCGAATTCAGAAGAAACCTCATGTCATTTGTTTAAATTGTTGGGTTTTGTTTTTTGGTTGATCTAAAATGAGGTTTCCTGTTGGTTGATCTATTAGTGTAGTGGACTAGTTATATTGCTGACCGTGAANTCTATTAGTGTAGTGGACTAGTTATATTGCTGACCGTGAATAAGTTGAGGACTTGCTGGTACTTGACATTATTTTCACAGTTAACATGGGTGCTGCTGGATATAGTTTATAGTTTTAGAAGGATAAGGAGAATTATCTACTCTGCCATATATTTAATTATACATTTTTACTAGTTATGCCATACAAGTAACAGTAGGAATATCAACGAGTTATGAATATACCATTCAGTGCCATTTGGAATTTCAAGTTTTGATAATGAGACTATGGTTATCAATTTTGATCTCCATTTATATTGTTTTGATCATCGGGATATGATTAGCAAGTTTCCAGCTAAGAGTACTCTAAGTTGTTAGCTAACTCATATTTTGAGATTAAATAGGAACCAATTGGCAGATAAATGGATCACGATAAGAAATAATACAGGAGTTCTTGGTGTTGAAAATTGCTATGAAAGTGGAATCAGTTCCGCAATGGGAGTAGTTAGGCTGTCATGGTCGAAGGTTTTTTAAAAAGTAGATCATACGATAAATAAGTGTCTGCTTGGCTGTAGTGGTGAATGAAATATGGACATTAATTGAGAAAGGATGAGTTCTTGAATCTCTCTGTTGCTTCTAATGTGCATCTGTGTATGTCTTTTGTACTGCTTTTGTTCTGCACTATACTTCTCTTCTGTTTTGCTCTGCTCGGATACTGTTTCTGTACTGCTTTATACTGCTGCTGTAGTTGACTAGTTGCTGCTGCAGTTGGCTTTGTATTGCTGCTGTTGTGGCTGCTCCAGTTGGCTCGAATCAGCAATAACATGATAAAAGTATAGCTTAAGGTCTCATATAATACAACCAGCACTATATCATGATGTAAGAACAACTAAACAAATCCAGTTATTGTTTACCCCCCCCAACTAAACAACTAAACTAAATTATCACCTCAGTTGATCAACCTTCTGAAAATGTCATTAATGGCGAGCTGGTAGATAGCCATAAACTGAAAAGAAAATCAAAACCAGTTATTGTTTACCGCCCCCCCCCCCTCCCCCCCCGCTCTTTCTTCTTTTCTTGGGTGTACTTTTGTTGTTCTTCCATTGCTCTCTCAGTTTTATAAGGGGGAATGTGGTTTATTATAAAGCAATGTCAATAGCGTTATTAGGGTGAATGTGGTTTCTTATACAGAAATCGCATAGCTTTATCAGGAGAAATGTGGTTTCTTATAAAGCAATGGTACTCCAATTCTTTCTACTTTTTATGCTTTTCGCTTTTTAACCTTCTAGGAGAGCTTTTTGTTGTACATTTTGGGCTTTCCAGTCTTTCTTTCTTCCCCCTTCTCCAGCAGACTTGTTATCCTCTGGTGAGTGCAATTAACATGATTTTTGCTGCATGCAAAGTTTTCTTTATATCGAACTGCTGATTTGAAGCATTTGTATATTAATAGTCGTAGGATAGTTTAGGAGCTCCATTCATTTGTTGGACACAATCTGGCAAGACATGACCGACACCGATTTAGAAAGAACAAAGCATATCATGGCGGATATGATCTGCCCTGTTCTGTTGGACACAATCATTAAAGGTTCTTCTTTACTTAAGTTCTCCCTTGAAATTTATTTGATCTACTCAGTTTGTAGAAGTTTTAAGCATTTGTTTAGTGACGTTCTTTGATTTCTTGCTGTATGAATTTATGTGAAATTTTTTATTCTTTGATTTGTTTGATCTACTCAATTGAAATGTTCTGTCTCCACAGTCAATTTCCTTCTCTGTAGTTGAGTTCATTTCTGTTTCAAAGTAAGATAGCTAAAGTATGCACCAATTGAAATGCCTTTTATGTTCACTTGTCTTGAGGTCAATCTTCATCATATAAACAATGTTTCTTAGTAAAACGGTAAGTTGTGCTGCACATAGTAATTTGTGTAGGTGATGGTAGTTAGTATATTGCTCAAGACTGGGCCATTTAGTTCCTTCTGAAGATAGATATTGTTGCAATGAGGAGATAAGTATCTGCTTTAACAGTGTTGCATTTTCGGAGTTTCAGTTACAATTTTGTGGAAAATATATTACTCTTATTAGAGTTATTCCCTCTTTCCCGTCATATTGATAACATTTTGTAAGTACCAAAAAAAGGGAAATATGGATTGATTTCTGTCTACTATTAACTGTATTGACGTATAATGTATTCACATGTTCATGCAGTTTTGAGTTTTTAACTATATTTTAAAATAGTTAAAAGTAGAAATTACTAACTTATGGGGTAGACTGGCAGAAGGGTTAGAAACTACGTATTTGTTGCCTCTTTATACCGCAAAATGTGTCGGGTTATTGTTTTTGTATAGCGTAGGCAGTAAACATGGGATAACACTAACAGCGCTATTTTTACTGATTGTAAGTGCAATATAGGTTTGAAATGGAGCATAATATAGGTTTGAAATGGAGCTCCTTTTTGCAGTATCAAAGGTGGAATTCTTGTCCAATCCTTGTGTAGTTTATTTTCTGTCATACTAATGAGATTTTCCAAAAGAATTTTAATAGATTGTTAATTGTTTAACATGAATTGGGATACTGCTTCTATACCGAGTGAGGCTGGTATAAATCTATAGTTGTTCTTTCTCTCAACTTTTTCTCCGGCAGATAGGTTAAATTTGGTACACTTTGAAATTTTGTCATTATCTTACAGGCAATCCTCGAATTTCTACCGTCAATATTATCTGGATTAATCCAGTCACAACAACTTGGGTGCAAAGTCCTTGTAGCAGTACAAAGGGTGTAGCAGTACAAAGGGTGTAGCAGTACAAAGGGTGAATTAGCTGTGGAAGTAGCTCTGGAGAAGGAAGCAGTCAGGCTAACTGGTGATGCATGGAGGATTATCCTAGATTGTTGTCTGCTTGTTTTCCACCTGATTGATACTAGGCGCTCTATTCCATATGCAATAAAACAAATCCAAGACCTTTTTGGAATATCATGTGCCTTTGATCAAGCAGTGCAGGTATGGTTAAACTGCCTGTATTTCTATATTAATAGCACGCTGTTAATATTTTTTCGTTGCATTATATGATAAGGATTGCAACTTGTGAAGGGATTTTAGAAGTTTTCTTTTGTGAAGTAGATACTCAGTTGTTTTTATTATATTTGGTCTTTGATGCATTGAAGTTAAGAGGTTTTGAGATTCCAGTTAAGAGGTTTCTGCAAAAGCCAATAAGACAGAAAAGTCAAATACATTGTGTATGACGTTATCAATTTGTCATATTTACAGCTTTGCAAAGCCAA

mRNA sequence

TTTCTAGTCTTGCTTGGGGTTTCGATTTGGGGGTTTTCTTGGTATAAGCTTATTCAAATTTCTCTCTTCATGTTCCGAAATTTTGGTTATTTTCCATGATTTACAAGGTTAGATATTAGGTTTTCTAAATTATTTTCTGATTTAGGTTTTGATTTTAATTTAATAATTAGCAATAATATGATCGAGTTTTAGTTTTCTTGGGTTGAGAATTTTAGTGAGATGCTTTTGCGACAATAATATGATTTTAATTTTTGTAATTAGCAATAAGATGATCGAGTTTTTTTATTGTATATTTGAATCTATTTTCTTCAATATCTATTGCTCGGTGGTAGTGTTTGTTCATGTTAAATTTGTGGTCTTATTGCTTGATTCGTTCTCTGTTTCTTTTTGCATTAAGTTTTTAGTTTAATAATACTTTTATTATCTTATGATTTCGAATTCAGAAGAAACCTCATGTCATTTGTTTAAATTGTTGGGTTTTGTTTTTTGGTTGATCTAAAATGAGGTTTCCTGTTGGTTGATCTATTAGTGTAGTGGACTAGTTATATTGCTGACCGTGAANTCTATTAGTGTAGTGGACTAGTTATATTGCTGACCGTGAATAAGTTGAGGACTTGCTGGTACTTGACATTATTTTCACAGTTAACATGGGTGCTGCTGGATATAGTTTATAGTTTTAGAAGGATAAGGAGAATTATCTACTCTGCCATATATTTAATTATACATTTTTACTAGTTATGCCATACAAGTAACAGTAGGAATATCAACGAGTTATGAATATACCATTCAGTGCCATTTGGAATTTCAAGTTTTGATAATGAGACTATGGTTATCAATTTTGATCTCCATTTATATTGTTTTGATCATCGGGATATGATTAGCAAGTTTCCAGCTAAGAGTACTCTAAGTTGTTAGCTAACTCATATTTTGAGATTAAATAGGAACCAATTGGCAGATAAATGGATCACGATAAGAAATAATACAGGAGTTCTTGGTGTTGAAAATTGCTATGAAAGTGGAATCAGTTCCGCAATGGGAGTAGTTAGGCTGTCATGGTCGAAGGTTTTTTAAAAAGTAGATCATACGATAAATAAGTGTCTGCTTGGCTGTAGTGGTGAATGAAATATGGACATTAATTGAGAAAGGATGAGTTCTTGAATCTCTCTGTTGCTTCTAATGTGCATCTGTGTATGTCTTTTGTACTGCTTTTGTTCTGCACTATACTTCTCTTCTGTTTTGCTCTGCTCGGATACTGTTTCTGTACTGCTTTATACTGCTGCTGTAGTTGACTAGTTGCTGCTGCAGTTGGCTTTGTATTGCTGCTGTTGTGGCTGCTCCAGTTGGCTCGAATCAGCAATAACATGATAAAAGTATAGCTTAAGGTCTCATATAATACAACCAGCACTATATCATGATGTAAGAACAACTAAACAAATCCAGTTATTGTTTACCCCCCCCAACTAAACAACTAAACTAAATTATCACCTCAGTTGATCAACCTTCTGAAAATGTCATTAATGGCGAGCTGGTAGATAGCCATAAACTGAAAAGAAAATCAAAACCAGTTATTGTTTACCGCCCCCCCCCCCTCCCCCCCCGCTCTTTCTTCTTTTCTTGGGTGTACTTTTGTTGTTCTTCCATTGCTCTCTCAGTTTTATAAGGGGGAATGTGGTTTATTATAAAGCAATGTCAATAGCGTTATTAGGGTGAATGTGGTTTCTTATACAGAAATCGCATAGCTTTATCAGGAGAAATGTGGTTTCTTATAAAGCAATGGTACTCCAATTCTTTCTACTTTTTATGCTTTTCGCTTTTTAACCTTCTAGGAGAGCTTTTTGTTGTACATTTTGGGCTTTCCAGTCTTTCTTTCTTCCCCCTTCTCCAGCAGACTTGTTATCCTCTGTCGTAGGATAGTTTAGGAGCTCCATTCATTTGTTGGACACAATCTGGCAAGACATGACCGACACCGATTTAGAAAGAACAAAGCATATCATGGCGGATATGATCTGCCCTGTTCTGTTGGACACAATCATTAAAGGCAATCCTCGAATTTCTACCGTCAATATTATCTGGATTAATCCAGTCACAACAACTTGGGTGCAAAGTCCTTGTAGCAGTACAAAGGGTGTAGCAGTACAAAGGGTGCGCTCTATTCCATATGCAATAAAACAAATCCAAGACCTTTTTGGAATATCATGTGCCTTTGATCAAGCAGTGCAGTTAAGAGGTTTTGAGATTCCAGTTAAGAGGTTTCTGCAAAAGCCAATAAGACAGAAAAGTCAAATACATTGTGTATGACGTTATCAATTTGTCATATTTACAGCTTTGCAAAGCCAA

Coding sequence (CDS)

ATGACCGACACCGATTTAGAAAGAACAAAGCATATCATGGCGGATATGATCTGCCCTGTTCTGTTGGACACAATCATTAAAGGCAATCCTCGAATTTCTACCGTCAATATTATCTGGATTAATCCAGTCACAACAACTTGGGTGCAAAGTCCTTGTAGCAGTACAAAGGGTGTAGCAGTACAAAGGGTGCGCTCTATTCCATATGCAATAAAACAAATCCAAGACCTTTTTGGAATATCATGTGCCTTTGATCAAGCAGTGCAGTTAAGAGGTTTTGAGATTCCAGTTAAGAGGTTTCTGCAAAAGCCAATAAGACAGAAAAGTCAAATACATTGTGTATGA

Protein sequence

MTDTDLERTKHIMADMICPVLLDTIIKGNPRISTVNIIWINPVTTTWVQSPCSSTKGVAVQRVRSIPYAIKQIQDLFGISCAFDQAVQLRGFEIPVKRFLQKPIRQKSQIHCV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo13900.1Spo13900.1mRNA


Homology
[Close]
BLAST of Spo13900.1 vs. NCBI nr
Match: gi|902203993|gb|KNA14744.1| (hypothetical protein SOVF_104130 [Spinacia oleracea])

HSP 1 Score: 149.8 bits (377), Expect = 2.800e-33
Identity = 82/119 (68.91%), Postives = 86/119 (72.27%), Query Frame = 1 

		  

Query: 1    MTDTDLERTKHIMADMICPVLLDTIIKGNPRISTVNIIWINPVTTTWVQSPCSSTKG--- 60
            MTDTDLERTKHIMADMICPVLLDTIIKG+PRISTVNIIWINP TTTWVQSPCSSTKG   
Sbjct: 1023 MTDTDLERTKHIMADMICPVLLDTIIKGDPRISTVNIIWINPGTTTWVQSPCSSTKGELA 1082

Query: 61   --VAVQRV--------------------------RSIPYAIKQIQDLFGISCAFDQAVQ 89
              VA+++                           RSIPYAIKQIQDLFGISCAFDQAVQ
Sbjct: 1083 VEVALEKEAVRLTGDAWRIVLDCCLPVFHLIDTRRSIPYAIKQIQDLFGISCAFDQAVQ 1141
[Close]
BLAST of Spo13900.1 vs. NCBI nr
Match: gi|59939212|gb|AAX12374.1| (DNA-directed RNA polymerase alpha subunit [Spinacia oleracea])

HSP 1 Score: 149.8 bits (377), Expect = 2.800e-33
Identity = 82/119 (68.91%), Postives = 86/119 (72.27%), Query Frame = 1 

		  

Query: 1   MTDTDLERTKHIMADMICPVLLDTIIKGNPRISTVNIIWINPVTTTWVQSPCSSTKG--- 60
           MTDTDLERTKHIMADMICPVLLDTIIKG+PRISTVNIIWINP TTTWVQSPCSSTKG   
Sbjct: 813 MTDTDLERTKHIMADMICPVLLDTIIKGDPRISTVNIIWINPGTTTWVQSPCSSTKGELA 872

Query: 61  --VAVQRV--------------------------RSIPYAIKQIQDLFGISCAFDQAVQ 89
             VA+++                           RSIPYAIKQIQDLFGISCAFDQAVQ
Sbjct: 873 VEVALEKEAVRLTGDAWRIVLDCCLPVFHLIDTRRSIPYAIKQIQDLFGISCAFDQAVQ 931
[Close]
BLAST of Spo13900.1 vs. NCBI nr
Match: gi|870866088|gb|KMT17107.1| (hypothetical protein BVRB_2g041610 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 139.4 bits (350), Expect = 3.800e-30
Identity = 74/119 (62.18%), Postives = 80/119 (67.23%), Query Frame = 1 

		  

Query: 1    MTDTDLERTKHIMADMICPVLLDTIIKGNPRISTVNIIWINPVTTTWVQSPCSSTKGVAV 60
            + D+DLERTKHIMAD+ICP+LLDTIIKG+PRISTVNIIWINP TTTWVQSPCS+ KG   
Sbjct: 899  LADSDLERTKHIMADVICPILLDTIIKGDPRISTVNIIWINPGTTTWVQSPCSNRKGELA 958

Query: 61   QRV-------------------------------RSIPYAIKQIQDLFGISCAFDQAVQ 89
              V                               RSIPYAIKQIQDLFGISCAFDQAVQ
Sbjct: 959  VEVTLEKEAVRQSGDAWRIVLDCCLPVFHLIDSQRSIPYAIKQIQDLFGISCAFDQAVQ 1017
[Close]
BLAST of Spo13900.1 vs. NCBI nr
Match: gi|731319831|ref|XP_010670484.1| (PREDICTED: DNA-directed RNA polymerase V subunit 1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 139.4 bits (350), Expect = 3.800e-30
Identity = 74/119 (62.18%), Postives = 80/119 (67.23%), Query Frame = 1 

		  

Query: 1    MTDTDLERTKHIMADMICPVLLDTIIKGNPRISTVNIIWINPVTTTWVQSPCSSTKGVAV 60
            + D+DLERTKHIMAD+ICP+LLDTIIKG+PRISTVNIIWINP TTTWVQSPCS+ KG   
Sbjct: 1015 LADSDLERTKHIMADVICPILLDTIIKGDPRISTVNIIWINPGTTTWVQSPCSNRKGELA 1074

Query: 61   QRV-------------------------------RSIPYAIKQIQDLFGISCAFDQAVQ 89
              V                               RSIPYAIKQIQDLFGISCAFDQAVQ
Sbjct: 1075 VEVTLEKEAVRQSGDAWRIVLDCCLPVFHLIDSQRSIPYAIKQIQDLFGISCAFDQAVQ 1133
[Close]
BLAST of Spo13900.1 vs. NCBI nr
Match: gi|697097805|ref|XP_009623505.1| (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase V subunit 1 [Nicotiana tomentosiformis])

HSP 1 Score: 105.9 bits (263), Expect = 4.600e-20
Identity = 53/118 (44.92%), Postives = 70/118 (59.32%), Query Frame = 1 

		  

Query: 2    TDTDLERTKHIMADMICPVLLDTIIKGNPRISTVNIIWINPVTTTWVQSPCSSTKGV--- 61
            +D  LER  HI+ADMICP+LLDT+IKG+PR+S+ NI+WI+P T TW+++P  S  G    
Sbjct: 1017 SDDHLERVSHILADMICPILLDTVIKGDPRVSSANIVWISPDTMTWIRNPSKSQSGELAL 1076

Query: 62   ----------------------------AVQRVRSIPYAIKQIQDLFGISCAFDQAVQ 89
                                         +   RSIPYAIKQ+Q+L GISCAF+QAV+
Sbjct: 1077 DIVLEKEAVKQRGDAWRILMDSCLPFIHLIDTRRSIPYAIKQVQELIGISCAFEQAVK 1134
[Close]
BLAST of Spo13900.1 vs. UniProtKB/TrEMBL
Match: Q5D868_SPIOL (DNA-directed RNA polymerase subunit (Fragment) OS=Spinacia oleracea GN=NRPD1b PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.000e-33
Identity = 82/119 (68.91%), Postives = 86/119 (72.27%), Query Frame = 1 

		  

Query: 1   MTDTDLERTKHIMADMICPVLLDTIIKGNPRISTVNIIWINPVTTTWVQSPCSSTKG--- 60
           MTDTDLERTKHIMADMICPVLLDTIIKG+PRISTVNIIWINP TTTWVQSPCSSTKG   
Sbjct: 813 MTDTDLERTKHIMADMICPVLLDTIIKGDPRISTVNIIWINPGTTTWVQSPCSSTKGELA 872

Query: 61  --VAVQRV--------------------------RSIPYAIKQIQDLFGISCAFDQAVQ 89
             VA+++                           RSIPYAIKQIQDLFGISCAFDQAVQ
Sbjct: 873 VEVALEKEAVRLTGDAWRIVLDCCLPVFHLIDTRRSIPYAIKQIQDLFGISCAFDQAVQ 931
[Close]
BLAST of Spo13900.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R704_SPIOL (DNA-directed RNA polymerase subunit OS=Spinacia oleracea GN=SOVF_104130 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.000e-33
Identity = 82/119 (68.91%), Postives = 86/119 (72.27%), Query Frame = 1 

		  

Query: 1    MTDTDLERTKHIMADMICPVLLDTIIKGNPRISTVNIIWINPVTTTWVQSPCSSTKG--- 60
            MTDTDLERTKHIMADMICPVLLDTIIKG+PRISTVNIIWINP TTTWVQSPCSSTKG   
Sbjct: 1023 MTDTDLERTKHIMADMICPVLLDTIIKGDPRISTVNIIWINPGTTTWVQSPCSSTKGELA 1082

Query: 61   --VAVQRV--------------------------RSIPYAIKQIQDLFGISCAFDQAVQ 89
              VA+++                           RSIPYAIKQIQDLFGISCAFDQAVQ
Sbjct: 1083 VEVALEKEAVRLTGDAWRIVLDCCLPVFHLIDTRRSIPYAIKQIQDLFGISCAFDQAVQ 1141
[Close]
BLAST of Spo13900.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CU22_BETVU (DNA-directed RNA polymerase subunit OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g041610 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.600e-30
Identity = 74/119 (62.18%), Postives = 80/119 (67.23%), Query Frame = 1 

		  

Query: 1    MTDTDLERTKHIMADMICPVLLDTIIKGNPRISTVNIIWINPVTTTWVQSPCSSTKGVAV 60
            + D+DLERTKHIMAD+ICP+LLDTIIKG+PRISTVNIIWINP TTTWVQSPCS+ KG   
Sbjct: 899  LADSDLERTKHIMADVICPILLDTIIKGDPRISTVNIIWINPGTTTWVQSPCSNRKGELA 958

Query: 61   QRV-------------------------------RSIPYAIKQIQDLFGISCAFDQAVQ 89
              V                               RSIPYAIKQIQDLFGISCAFDQAVQ
Sbjct: 959  VEVTLEKEAVRQSGDAWRIVLDCCLPVFHLIDSQRSIPYAIKQIQDLFGISCAFDQAVQ 1017
[Close]
BLAST of Spo13900.1 vs. UniProtKB/TrEMBL
Match: K4B027_SOLLC (DNA-directed RNA polymerase subunit OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.500e-20
Identity = 55/118 (46.61%), Postives = 71/118 (60.17%), Query Frame = 1 

		  

Query: 2    TDTDLERTKHIMADMICPVLLDTIIKGNPRISTVNIIWINPVTTTWVQSPCSSTKG---- 61
            +D  LER  HI+ADMICP+LLDT+IKG+PR+S+ NI WI+P T +W++SP  S +G    
Sbjct: 1062 SDDHLERVSHILADMICPILLDTVIKGDPRVSSANIAWISPDTMSWIRSPSKSQRGELAL 1121

Query: 62   -------VAVQR--------------------VRSIPYAIKQIQDLFGISCAFDQAVQ 89
                      QR                     RSIPYAIKQ+Q+L GISCAF+QAV+
Sbjct: 1122 DIVLEKEAVKQRGDAWRILMDSCLPVIHLIDTTRSIPYAIKQVQELIGISCAFEQAVK 1179
[Close]
BLAST of Spo13900.1 vs. UniProtKB/TrEMBL
Match: M5XPM8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024567mg PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.100e-19
Identity = 54/105 (51.43%), Postives = 66/105 (62.86%), Query Frame = 1 

		  

Query: 3   DTDLERTKHIMADMICPVLLDTIIKGNPRISTVNIIWINPVTTTWVQSPCSSTKGV---- 62
           D +   T    AD+ICPVLL+TIIKG+PRI + NIIWI+P TTTW++SP  S K +    
Sbjct: 50  DLETTTTLQYYADLICPVLLETIIKGDPRIGSANIIWIDPDTTTWIRSPNKSHKVIKQSG 109

Query: 63  ---------------AVQRVRSIPYAIKQIQDLFGISCAFDQAVQ 89
                           +   RSIPYAIKQIQ+L G+SCAFDQAVQ
Sbjct: 110 DAWRTVLDSCLPVLHLIDTRRSIPYAIKQIQELLGVSCAFDQAVQ 154
[Close]
BLAST of Spo13900.1 vs. ExPASy Swiss-Prot
Match: NRPE1_ARATH (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana GN=NRPE1 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.000e-14
Identity = 45/118 (38.14%), Postives = 65/118 (55.08%), Query Frame = 1 

		  

Query: 2    TDTDLERTKHIMADMICPVLLDTIIKGNPRISTVNIIWINPVTTTWVQSPCSSTKGVAVQ 61
            TD DLERT  ++ + + PVLL+ +IKG+ RI + NIIW +   TTW+++  +S +G  V 
Sbjct: 1013 TDPDLERTLDVLCNTVYPVLLEIVIKGDSRICSANIIWNSSDMTTWIRNRHASRRGEWVL 1072

Query: 62   RV-------------------------------RSIPYAIKQIQDLFGISCAFDQAVQ 89
             V                               RSIPY++KQ+Q+L G+SCAF+QAVQ
Sbjct: 1073 DVTVEKSAVKQSGDAWRVVIDSCLSVLHLIDTKRSIPYSVKQVQELLGLSCAFEQAVQ 1130
[Close]
BLAST of Spo13900.1 vs. TAIR (Arabidopsis)
Match: AT2G40030.1 (nuclear RNA polymerase D1B)

HSP 1 Score: 80.9 bits (198), Expect = 5.600e-16
Identity = 45/118 (38.14%), Postives = 65/118 (55.08%), Query Frame = 1 

		  

Query: 2    TDTDLERTKHIMADMICPVLLDTIIKGNPRISTVNIIWINPVTTTWVQSPCSSTKGVAVQ 61
            TD DLERT  ++ + + PVLL+ +IKG+ RI + NIIW +   TTW+++  +S +G  V 
Sbjct: 1013 TDPDLERTLDVLCNTVYPVLLEIVIKGDSRICSANIIWNSSDMTTWIRNRHASRRGEWVL 1072

Query: 62   RV-------------------------------RSIPYAIKQIQDLFGISCAFDQAVQ 89
             V                               RSIPY++KQ+Q+L G+SCAF+QAVQ
Sbjct: 1073 DVTVEKSAVKQSGDAWRVVIDSCLSVLHLIDTKRSIPYSVKQVQELLGLSCAFEQAVQ 1130
The following BLAST results are available for this feature:
BLAST of Spo13900.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902203993|gb|KNA14744.1|2.8e-3368.9hypothetical protein SOVF_1041... [more]
gi|59939212|gb|AAX12374.1|2.8e-3368.9DNA-directed RNA polymerase al... [more]
gi|870866088|gb|KMT17107.1|3.8e-3062.1hypothetical protein BVRB_2g04... [more]
gi|731319831|ref|XP_010670484.1|3.8e-3062.1PREDICTED: DNA-directed RNA po... [more]
gi|697097805|ref|XP_009623505.1|4.6e-2044.9PREDICTED: LOW QUALITY PROTEIN... [more]
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BLAST of Spo13900.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
Q5D868_SPIOL2.0e-3368.9DNA-directed RNA polymerase su... [more]
A0A0K9R704_SPIOL2.0e-3368.9DNA-directed RNA polymerase su... [more]
A0A0J8CU22_BETVU2.6e-3062.1DNA-directed RNA polymerase su... [more]
K4B027_SOLLC5.5e-2046.6DNA-directed RNA polymerase su... [more]
M5XPM8_PRUPE2.1e-1951.4Uncharacterized protein OS=Pru... [more]
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BLAST of Spo13900.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NRPE1_ARATH1.0e-1438.1DNA-directed RNA polymerase V ... [more]
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BLAST of Spo13900.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT2G40030.15.6e-1638.1nuclear RNA polymerase D1B[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 5..88
score: 6.8
NoneNo IPR availablePANTHERPTHR19376:SF36DNA-DIRECTED RNA POLYMERASE V SUBUNIT 1coord: 5..88
score: 6.8

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0071704 organic substance metabolic process
biological_process GO:0007033 vacuole organization
biological_process GO:0010091 trichome branching
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0016558 protein import into peroxisome matrix
biological_process GO:0010351 lithium ion transport
biological_process GO:0006869 lipid transport
biological_process GO:0006891 intra-Golgi vesicle-mediated transport
biological_process GO:0006635 fatty acid beta-oxidation
biological_process GO:0007032 endosome organization
biological_process GO:0016197 endosomal transport
biological_process GO:0007034 vacuolar transport
biological_process GO:0048573 photoperiodism, flowering
biological_process GO:0008380 RNA splicing
biological_process GO:0006886 intracellular protein transport
biological_process GO:0019381 atrazine catabolic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005730 nucleolus
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005634 nucleus
cellular_component GO:0030904 retromer complex
cellular_component GO:0005771 multivesicular body
cellular_component GO:0005829 cytosol
cellular_component GO:0005622 intracellular
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0005488 binding
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0010181 FMN binding
molecular_function GO:0052853 long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity
molecular_function GO:0052854 medium-chain-(S)-2-hydroxy-acid oxidase activity
molecular_function GO:0052852 very-long-chain-(S)-2-hydroxy-acid oxidase activity
molecular_function GO:0018788 atrazine chlorohydrolase activity
molecular_function GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0046872 metal ion binding
RNA-Seq Expression