Spo13905 (gene)

Overview
NameSpo13905
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00215 : 404613 .. 407506 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAACGACCTCTGCAACGGCTACCATCTGATAAGGCTAATGCAACGGTTATGTTAGCTTGTCACACACTCGTACTAATTGATCTTAAACCTAGCCCACCCAAACACTTTCCCCAAATTATTTCAAAACCCAGTTCCCGAAGAGAGAGAAAAAGAAAAGGAGAGAGAAACCCTAATTTCCTTTCCCATTCCTCTAAACCTAAACCCCCAATTCAATCTTCTGCATCGATTTTTTCTTCTTTATTGTTTTTTTGATGGAGTAGATCTGGTTGGGGAATAGGGAGCCGAAAGTTCAAGCCTCATCTCTGGTTGTATTCGATGTGGTTGCTTCACGGTCGGTAAGTGGTTTCGCCATTTTTGGTCTTTTTGCCAAGTTCTTTCTTTTTGAGGAAGATCTTTAAGGAAGATTGTTCTAGTTCCTTCCTTATGTACCCATATTTAAATTCGTTTCTTGGCAATTTTTCAAATTTTAGTTTAAATCTTGTCCATAATGGTTTATGTAATTGTTGTTATAAATCAGAGTAGATTTGGATTTGATTGATGAAAATTTAGGGTTTGAGCGAGAAGAGTGATGTGGATATACAAAAAATATGAAATTGAATCTTACAATCTTTGACAATGGGAAAAATCTGATTAAATAGTTGAATTTATTGTTGGAATTGAAATGGTAGAGTTTTCACTTCTGAATTTTGGAGTTTCAATGAAGAAATGGGCCTTTCACACCACCTCTCTTCTACCAACTCTTCCATACCCACTAGCAAAATAATTACTAGTTTTTTTTATTAAAGATCCAAGTAAAATTTCTTGGAAAAATGATAGTTTTATGCATATAAGAAGAAATATATCTTCATATTTTTTATACAGCTAAGGTTAAAATAGCTAGTAGTTGCATACTTTAGTGGTTTTTATTGATTGCATAGAGTAAAAGTGAACATTGAGTATAATAGATTTTGAAATGTTGTCTTTCGATTGCTCATTCACTTTCTCGGTTCTGATTATGATTCTGATTGTAAATGATTTATTTAGAAATAGTTATGCTTCATTGGAAAATATGATGATTCTATATTTTCTATGATGCATGTCAAGGTATATACAGGAGAGTGCTTCTAAATGTGGGATTTGGATGCCTACTATAATAAGTGTAAACAAGAAGTTTATTATAAGCAAATTATAATCAAAAGGTCTTGCGCGCACAAGGTGTACAATAAATTTATTGTACACCAAGATAACTTTTAACCATTTTTTTGTAACTTTAACCTATTTTTTATTAACTTTTATAATAGTAAAAAAAAAAGTTGATAGAAATGGTTAAATGATTAATTTTATACATTATTAGTAGTTTTGAAGAAATATGCTTTACTAAAATGAAAAAAAATTATCACTAATAAATAGATAACTTTTACATATATAAGCTTAACTTTTAAACATTTTGAGTTAACTTTTACTCCGGTGTACAATATTTATTGTACACCCTTTGTAAATAAGAATTTGTGAATTCTAATTATGTATTCAAAGTTTTTTTTTGCATTTAGAGCTAGAACAGGGCATTTAGTGGGGTAGAAATTTGATACTCTTTCGTTCGATTGACTCTAAACGTAGTGCTCATTAGCTAAATGGGGATGTGTGGATGATGAGAATAGTTTGATGGTAGTCTTATGTGCTTGAACTGTTGGTTAATTGTATATTCTTTATCTCAGTTTTTGTTCATTAGAATTTCTGAACTGAAATGACATTACTTCGCCGTTTTAAGTGTGTTTGCACTACGATTAAGGATGAACTTGGCCTAGTTCTGTTGTATGATTGGGTTGCAAAATTTATTTTGTGTGCAAATATGGAGTTGGTATTCCAATTGAGCTGCTGGAATGGGTTATTCTCATAGGTTCATGGTGTTAGGTTGCTGAAATGGGTTATTCTCACAGGTTCATGGTGTTAGGTTGCTGAAATAGATGTTTTTTTTTCTCCTCGTTGCACGTTTTGACTAATATATAACATTTAGTGTTTGCATCTCCTTCCTGGATTTTATCATAAATGTGCAAGGGAATTCAGGGTAGACACATATCTGAAGAGAGAGAGAGATAGGATTCTTTCAGTTGCTTTTGCTGGTTACAGATGTGATATGCATGGTATGAGATTTTAAGCCTTTTTATGTGGATTGGAGTATATATGTATATATTTGTTTTTCTATGGAGGAAATTCATGTTACCATGACTTTGGGAAGGAATCTACATGGTTCCAACTTAAGAGCTATGAGTTGCTTATATTTTTTTAGGCTTGTGCCATGACTTTACCCTTTGAATAGATATCAAAAAGTTGACTCATAACAAAACCTCAATGAGTTGTGTTATTTATGTAATTATAATGCTTTTAATATCATTCTACCACCTCAATGATATGTAACTATTAACTTTATTTTATCCACTTTTACCACAAAAGGTATTTTTTATTTTCTTATCAGTTTATTTGTCCAAGGATTAATGATGGAAATGTGTTAATTTCATTCCAAATATGTAAACTTAGTTTTTTTATTTATGAACTTTGTAATTTTCATGTTATTAATACGGAGTAGAATACAATATCATTTGATTATATTGCAATTTTGATTGGCAGCTAGGTAGAGAAAGCATTCAATGGAGGCATGTTGGTTTGGAGATAGAGGAATTCACAACTATTACAAAATGATGACGGGCTTCACTTGAGTTTTATGGCAAATGATAGTAAATCTCAAAAATGTATGAAGTATTATATCTTGGGCTTAGTTTTTTGGCCTTTTCTCTGTTGGAACTTCCTTTCGTAGCTAATTTAGTAGCAATTCATTTTGTAAACCCACTGAAGGGAAATGTTAGATTGTATGTACATTTCCAATCTCAATGGAATATCATTATCGTTTTTAAAAT

mRNA sequence

ATGCAACGACCTCTGCAACGGCTACCATCTGATAAGGCTAATGCAACGGTTATGTTAGCTTGTCACACACTCATCTGGTTGGGGAATAGGGAGCCGAAAGTTCAAGCCTCATCTCTGGTTGTATTCGATGTGGTTGCTTCACGGTCGCTAGGTAGAGAAAGCATTCAATGGAGGCATGTTGGTTTGGAGATAGAGGAATTCACAACTATTACAAAATGATGACGGGCTTCACTTGAGTTTTATGGCAAATGATAGTAAATCTCAAAAATGTATGAAGTATTATATCTTGGGCTTAGTTTTTTGGCCTTTTCTCTGTTGGAACTTCCTTTCGTAGCTAATTTAGTAGCAATTCATTTTGTAAACCCACTGAAGGGAAATGTTAGATTGTATGTACATTTCCAATCTCAATGGAATATCATTATCGTTTTTAAAAT

Coding sequence (CDS)

ATGCAACGACCTCTGCAACGGCTACCATCTGATAAGGCTAATGCAACGGTTATGTTAGCTTGTCACACACTCATCTGGTTGGGGAATAGGGAGCCGAAAGTTCAAGCCTCATCTCTGGTTGTATTCGATGTGGTTGCTTCACGGTCGCTAGGTAGAGAAAGCATTCAATGGAGGCATGTTGGTTTGGAGATAGAGGAATTCACAACTATTACAAAATGA

Protein sequence

MQRPLQRLPSDKANATVMLACHTLIWLGNREPKVQASSLVVFDVVASRSLGRESIQWRHVGLEIEEFTTITK
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo13905.1Spo13905.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo13905.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo13905.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo13905.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo13905.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009658 chloroplast organization
biological_process GO:0019760 glucosinolate metabolic process
biological_process GO:0010286 heat acclimation
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0042908 xenobiotic transport
biological_process GO:0007165 signal transduction
biological_process GO:0009651 response to salt stress
biological_process GO:0000226 microtubule cytoskeleton organization
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0030007 cellular potassium ion homeostasis
biological_process GO:0043090 amino acid import
biological_process GO:0006457 protein folding
biological_process GO:0006468 protein phosphorylation
biological_process GO:0000023 maltose metabolic process
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0007033 vacuole organization
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process GO:0007030 Golgi organization
biological_process GO:0000902 cell morphogenesis
biological_process GO:0016049 cell growth
biological_process GO:0032259 methylation
biological_process GO:0048767 root hair elongation
biological_process GO:0009698 phenylpropanoid metabolic process
biological_process GO:0042398 cellular modified amino acid biosynthetic process
biological_process GO:0007267 cell-cell signaling
biological_process GO:0019722 calcium-mediated signaling
biological_process GO:0007020 microtubule nucleation
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0042744 hydrogen peroxide catabolic process
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0009657 plastid organization
biological_process GO:0010206 photosystem II repair
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0019497 hexachlorocyclohexane metabolic process
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0006768 biotin metabolic process
biological_process GO:0006979 response to oxidative stress
biological_process GO:0030091 protein repair
biological_process GO:0006464 cellular protein modification process
biological_process GO:0006810 transport
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0006364 rRNA processing
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0009744 response to sucrose
biological_process GO:0010114 response to red light
biological_process GO:0009644 response to high light intensity
biological_process GO:0010218 response to far red light
biological_process GO:0009637 response to blue light
biological_process GO:0010155 regulation of proton transport
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006655 phosphatidylglycerol biosynthetic process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0030154 cell differentiation
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0009555 pollen development
biological_process GO:0006598 polyamine catabolic process
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0010046 response to mycotoxin
biological_process GO:0048438 floral whorl development
biological_process GO:0010582 floral meristem determinacy
biological_process GO:0009855 determination of bilateral symmetry
biological_process GO:0009850 auxin metabolic process
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0009887 animal organ morphogenesis
biological_process GO:0010158 abaxial cell fate specification
biological_process GO:0010363 regulation of plant-type hypersensitive response
biological_process GO:0006612 protein targeting to membrane
biological_process GO:0009963 positive regulation of flavonoid biosynthetic process
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:0010224 response to UV-B
biological_process GO:2000030 regulation of response to red or far red light
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway
biological_process GO:0006570 tyrosine metabolic process
biological_process GO:0009733 response to auxin
biological_process GO:0009737 response to abscisic acid
biological_process GO:0035335 peptidyl-tyrosine dephosphorylation
biological_process GO:0043407 negative regulation of MAP kinase activity
biological_process GO:0009755 hormone-mediated signaling pathway
biological_process GO:0051301 cell division
biological_process GO:0016310 phosphorylation
biological_process GO:0000278 mitotic cell cycle
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0008152 metabolic process
biological_process GO:0048439 flower morphogenesis
biological_process GO:0030244 cellulose biosynthetic process
biological_process GO:0006886 intracellular protein transport
biological_process GO:0010050 vegetative phase change
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0030488 tRNA methylation
biological_process GO:0010200 response to chitin
biological_process GO:0009987 cellular process
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0048519 negative regulation of biological process
biological_process GO:0010051 xylem and phloem pattern formation
biological_process GO:0009616 virus induced gene silencing
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0046686 response to cadmium ion
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006771 riboflavin metabolic process
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016020 membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0005815 microtubule organizing center
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0005739 mitochondrion
cellular_component GO:0031977 thylakoid lumen
cellular_component GO:0031515 tRNA (m1A) methyltransferase complex
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0048046 apoplast
cellular_component GO:0005829 cytosol
cellular_component GO:0009506 plasmodesma
cellular_component GO:0000325 plant-type vacuole
cellular_component GO:0033179 proton-transporting V-type ATPase, V0 domain
cellular_component GO:0005795 Golgi stack
cellular_component GO:0005634 nucleus
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0000785 chromatin
molecular_function GO:0003682 chromatin binding
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0032440 2-alkenal reductase [NAD(P)] activity
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0015078 proton transmembrane transporter activity
molecular_function GO:0005515 protein binding
molecular_function GO:0003993 acid phosphatase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0005488 binding
molecular_function GO:0016301 kinase activity
molecular_function GO:0004725 protein tyrosine phosphatase activity
molecular_function GO:0008138 protein tyrosine/serine/threonine phosphatase activity
molecular_function GO:0019899 enzyme binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0016429 tRNA (adenine-N1-)-methyltransferase activity
molecular_function GO:0008113 peptide-methionine (S)-S-oxide reductase activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0005179 hormone activity
molecular_function GO:0004871 obsolete signal transducer activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004535 poly(A)-specific ribonuclease activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0003756 protein disulfide isomerase activity
molecular_function GO:0043621 protein self-association
molecular_function GO:0008281 sulfonylurea receptor activity
molecular_function GO:0008559 xenobiotic transmembrane transporting ATPase activity
molecular_function GO:0004721 phosphoprotein phosphatase activity
molecular_function GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
molecular_function GO:0046983 protein dimerization activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo006770.76Barchart | Table
Spo233820.76Barchart | Table
Spo154990.75Barchart | Table
Spo010540.75Barchart | Table
Spo146300.75Barchart | Table
Spo229980.74Barchart | Table
Spo006670.74Barchart | Table
Spo108350.74Barchart | Table
Spo115090.74Barchart | Table
Spo108640.74Barchart | Table
Spo233320.73Barchart | Table
Spo082450.73Barchart | Table
Spo191230.73Barchart | Table
Spo169960.73Barchart | Table
Spo250080.73Barchart | Table
Spo007480.73Barchart | Table
Spo243310.72Barchart | Table
Spo145370.72Barchart | Table
Spo228110.72Barchart | Table
Spo158730.72Barchart | Table
Spo179560.72Barchart | Table
Spo146670.72Barchart | Table
Spo192170.72Barchart | Table
Spo056570.72Barchart | Table
Spo019250.72Barchart | Table
Spo168010.71Barchart | Table
Spo137830.71Barchart | Table
Spo153170.71Barchart | Table
Spo149420.71Barchart | Table
Spo002050.71Barchart | Table
Spo004980.71Barchart | Table
Spo036070.71Barchart | Table
Spo042000.71Barchart | Table
Spo005260.71Barchart | Table
Spo057280.71Barchart | Table
Spo081140.71Barchart | Table
Spo086450.71Barchart | Table
Spo089970.71Barchart | Table
Spo197380.71Barchart | Table
Spo097690.71Barchart | Table
Spo264300.71Barchart | Table
Spo177260.71Barchart | Table
Spo247360.70Barchart | Table
Spo282650.70Barchart | Table
Spo089350.70Barchart | Table
Spo115240.70Barchart | Table
Spo012610.70Barchart | Table
Spo259450.70Barchart | Table
Spo125890.70Barchart | Table
Spo123760.70Barchart | Table
Spo161860.70Barchart | Table
Spo218330.70Barchart | Table
Spo270810.70Barchart | Table
Spo041220.70Barchart | Table
Spo084940.70Barchart | Table
Spo238000.70Barchart | Table
Spo039010.70Barchart | Table
Spo034380.70Barchart | Table
Spo211550.70Barchart | Table
Spo083510.69Barchart | Table
Spo085910.69Barchart | Table
Spo140870.69Barchart | Table
Spo209300.69Barchart | Table
Spo237120.69Barchart | Table
Spo103160.69Barchart | Table
Spo135830.69Barchart | Table
Spo240460.69Barchart | Table
Spo147790.69Barchart | Table
Spo053070.69Barchart | Table
Spo233270.69Barchart | Table
Spo051250.69Barchart | Table
Spo119610.69Barchart | Table
Spo026650.68Barchart | Table
Spo016290.68Barchart | Table
Spo028900.68Barchart | Table
Spo054020.68Barchart | Table
Spo059150.68Barchart | Table
Spo092320.68Barchart | Table
Spo093350.68Barchart | Table
Spo097980.68Barchart | Table
Spo100310.68Barchart | Table
Spo104440.68Barchart | Table
Spo116680.68Barchart | Table
Spo116880.68Barchart | Table
Spo132810.68Barchart | Table
Spo154610.68Barchart | Table
Spo176100.68Barchart | Table
Spo201870.68Barchart | Table
Spo202640.68Barchart | Table
Spo240400.68Barchart | Table
Spo248860.68Barchart | Table
Spo263550.68Barchart | Table
Spo266100.68Barchart | Table
Spo093870.67Barchart | Table
Spo216000.67Barchart | Table
Spo021060.67Barchart | Table
Spo256530.67Barchart | Table
Spo185890.67Barchart | Table
Spo131710.67Barchart | Table
Spo229550.67Barchart | Table
Spo017270.67Barchart | Table
Spo232570.67Barchart | Table
Spo051350.67Barchart | Table
Spo035720.67Barchart | Table
Spo194310.67Barchart | Table
Spo244300.67Barchart | Table
Spo144030.67Barchart | Table
Spo175780.67Barchart | Table
Spo200500.67Barchart | Table
Spo012520.67Barchart | Table
Spo256590.67Barchart | Table
Spo244250.67Barchart | Table
Spo094990.67Barchart | Table
Spo211440.67Barchart | Table
Spo266880.66Barchart | Table
Spo174470.66Barchart | Table
Spo179450.66Barchart | Table
Spo112080.66Barchart | Table
Spo198500.66Barchart | Table
Spo198700.66Barchart | Table
Spo002830.66Barchart | Table
Spo224360.66Barchart | Table
Spo225830.66Barchart | Table
Spo063350.66Barchart | Table
Spo061640.66Barchart | Table
Spo033620.66Barchart | Table
Spo029320.66Barchart | Table
Spo238570.66Barchart | Table
Spo024800.66Barchart | Table
Spo240680.66Barchart | Table
Spo246230.66Barchart | Table
Spo016280.66Barchart | Table
Spo251590.66Barchart | Table
Spo256920.66Barchart | Table
Spo259850.66Barchart | Table
Spo134990.66Barchart | Table
Spo133930.66Barchart | Table
Spo246570.65Barchart | Table
Spo096050.65Barchart | Table
Spo008780.65Barchart | Table
Spo273640.65Barchart | Table
Spo133130.65Barchart | Table
Spo185780.65Barchart | Table
Spo123540.65Barchart | Table
Spo237450.65Barchart | Table
Spo024860.65Barchart | Table
Spo134900.65Barchart | Table
Spo172090.65Barchart | Table
Spo015140.65Barchart | Table
Spo129540.65Barchart | Table
Spo078920.65Barchart | Table
Spo207700.65Barchart | Table
Spo095540.65Barchart | Table
Spo153900.65Barchart | Table