Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATAACACTTAGTTATTTCTCATTTCTCACAAGTGGATTGACGCACACAATAATCAGAAACCCATCCGCCATTTCCAGCACACACATCCTTACCAAAAGAAAATGGAAAACAAAAAGATACTGGTAACCGGTGCATCAGGTTACTTAGGTGGTAGACTCTGCCACGCCTTACTCAGCCACGGCTACTCTGTCCGAGCTTTCGTCCGCCGTACCAGCAATCTCTCGTCTCTCCCCGCAGCATCTTCTTCCTCGTCAAACTCCCACTTCGAACTCGCCTTCGGCGACATTACTGACTTCTCCTCCCTTCTCGCCGCCGTAACCGGTTGCGATATTATCATCCACTCCGCCGCCCTCGTTGATCCTTGGCTTCCTGACCCTTCTTGCATCTTCACTGTAATTAAATCCCCTCATCAATTTCCAATTTTCATTCTATGCTTTTTATTTCATTTTAAAAAATTTGCTGTTGACTTTTATATTTGTGTAGGTTAATGTTGGTGGGTTGAAGAATGTGATTCAAGCTTCTAAAGAATGTAATTCGATTCAGCAGATCATCTACACGTCGTCGTTTTTTACTCTTGGACCTACTGATGGCGGCGTCATTGCTGACGAGAATCAGGTGATCTTTTCCCAGTTTCCCCTTATGCGTGTAGGGCCGTAATTACCCATGAAATCCGCCACCAGTTACTACTTACTAAGGGCTTTTTATTTGATAATACGAGCCCCTTTTGTTGCAAATTTCATATTTTCAAAGTCTTTTCAGTTTTATAGGCTCTTCCTTAGAATATTAAACCTTGTTTCCTCATATGTAGTAGATTTTCCACTTTTTTGTAGATGTACTTGTTTCAGTGAATATTTTAGTAGTTCTTTGGTTCTAAGGGAGAATTTTTTTTTTTTTTGGTAGGTACACCATGAGATGTTCTTTTGCACAGAATATGAGAGATCGAAGGTAATGGCGGATAAGATAGCATTACAAGCTGCATCAGATGGGGTTCAGGTTGTGGTGGTCTGTCCAGGCGTTATCTATGGTCCTGGCAAGCTTACTAATGGAAATATTGTTGCTAAAATGGTGAGTGTGAGTGTTAAACGGTTAAGAAATTGTAATCTTTACTTGTGATTTGTTTTTCGAGTATTACTTCATCATTAAATGTTCGTGTTAGCTTGCTTGTCATTAGATATTCTTGTTGGACTGCAGTAATGAATGATCACTTAACTAAATTTGCAATACCAACCTTTGTCCATGGCATATTAGTTGCTACATTGCCTACAAAAGGGGTGATGCGTGGATATTGGCACTTGGCAAAGTATTTGGATTTCTACCCCTTTCCTTTTTTGGGGCAAAGGGGTTGACCTTGAGTATATAGTTTTCAGTTCTGATAGTTGAAGACGTATTGGTGCTGGAAATTTTTAGTCATGGAGCCAAGGATGTCTGCACATTGTATTGAAATGTGTAGTCTATGTGGTTGGGGTTAGTCATATCAGATAAGCACTAGAACTCAATTAATATGCCGCAGCTGCCAGTCATCATTTATTGGATAACCACCTTTGTAGTAAAAACCAAAATAAAATACAAGCAAGGACTAGTTCGTACTCTATGTTTTGGGAACGTTCTTATGAAAGAGACGACGGACATCCTCAAATGCTCCTGCATCAGAGCCTCATCAAGCATGCATAGCTCGAATAGCTTGTGAGCCAGCTTGATTCACTATCACCCCTACATAGCTACAATTACTTTCAATTTGATCTTGTTTATTGGATCTTTTATTTCATATGTGCAAACCATCAACCTTAACTTATGGCAATTATCTAATCAGATATGAGCGAAACCATACAGTTAATTACAAACAGCACACAGTTATTGATGCCAACATGCTATGCAGAGAATACACTCATATTGGATGTTCTGAAAAATCCGCTGTTTTGGTAGCTTCGTAAGGAATTATGCTTGTAGTGGTACTGCATTAGATATTGTTGATCCCCCTAATGAGATTTCAATTTTCCTTCAATTTTCCAAGATTCTCGCTGTCATTGTGGTACTGTTAGTGGTACTGATGTCCCATGTTTTTTGTTTCTTTTGTAAAAGAGAGTTGCAAGTGAATTATTATTTGTATTTGGAAAAATAGTTTGATTGAGTTATTTGCAAACTTTGGTGTACTGAAAGTTTTGCTACAAAGTATGGAAGATTGGAATTGATAGAAAACATTAATCTGACTTATTGAGTGCTGCGTATGCAGCTTAATTGGTATATTTTGTCAAATTCAGAATACATCTGGTGTTTCATGGGGTTGGTGCTTGCTCTAATCTTTCTCTTTGCTGGTATACATGTGTAAAAGTTTTTCCCTTCGTTGACCTAGCATTCAAATCCATGTTGAAATGTTATGTTCACATAATCACATCTAATGTGTATTCTTGGAGATCAGTTTACCTAACTTTCTTCTTTATCTCTGCCTGTCAGCTAATTGAGCGCTTTAATGGGCGGTTACCTGGTTACATTGGAGATGGAAATGACAAATTTTCTTTTACTCATGTTGATGATGTTGTCGAGGGACACATAGCGGCTATGGAGAAAGGTCGTCCTGGTGAACGATATTTACTTACAGGAGAGAATGCATCATTCAAGTATGTTTTTGATGCTGCAGCTATCCTTACCAACACTAGTAAGCCCCGTTTGACTCTTCCGATGTGGACAATAGAGGCTTATGGATGGATTTCTGTTCTTTTTGCACGGATTACTGGAAAGTTGCCTCTAATCAGTCCCCCGGTATGTTTTCCATCCCAGTAGTTGATTACTACTCCGTGACTTTTCATCTGTTCAGTAAAATTCAACTGCAAAAACTATGGTACTACCAGGTCACTTCTAAATTAATCTGAATGTGCATCTTTAGATAGCTGCGTATAAAGCTCATGTTCTGTGACTAATATCATTGTACATCTTTTGGTACTGTTTGTCACTGTTTCATTGTCGTGTACTGTATGTGATGGTAGTTTAATAATATTCTTTCTGGTCAAACCTATACATTCCCTTGTGTTTCCTTGCCTGAAAATCACAACTCTCGTGACAATTTAAGTTGTTAAAACTTGGAGCAGACTGTAGCTGTGTTGCGACATCAATGGGCGTATTCATGTGAGAAAGCAAAGAAAGAGCTATCTTACGACCAAAGAAGCTTGAAGGATGGCTTAGAAGAGATGCTTCCTTGGTTGAAGAATTCGGGCTGTATAAAATACTAAATTTCTCGGCATCGTGGTTTTTTTATGCGATGCTGGTTGTAAGATTCAGTTGTAAACAAATGCCTAACGATGTTGCTTAACTATCTTCACTGTACATCAGACTTGAGCCCAGATGTTCTCCTTGTAGACCTGAGGAGGTATCAATCTAATCATCCAATTTCAATTGTTCGATACCATGTACATTAACAATTTTTTGTAAGGATTGTATACATAACAATTCATGTCCATTTATAATGGAGCCAAAGATTCATTTGTTCTTTTGGCTTTGGTATGTAATGGACTAAATCAAACAGGCTATTAAAACATCTTCGCTTCCTTTCCATGAAGTAGAAGATGGTCGTCCAGTTATCGCTTTTGGGTCAATTGAGAATAACCTCTTTGCAATTGCAAGGGTAAGGTTGCGTACACCCTACCTCTCCTTACCCGCTTGTTGCGGGAGCCTTTTTGAGGCAATGGGTTAATGATAATGATAACCAATGATTGTATACATAATAATTGTTCAATAACATTTTTTTTACATACAGTAAAAGTACTGAAAATAAAGACACAAAAAAATCTAGTCTGGTTCTAGAGCAAAAGTAGCGAAGATTGCGCCTCCATTGATTGTCATCTGCGC AATAACACTTAGTTATTTCTCATTTCTCACAAGTGGATTGACGCACACAATAATCAGAAACCCATCCGCCATTTCCAGCACACACATCCTTACCAAAAGAAAATGGAAAACAAAAAGATACTGGTAACCGGTGCATCAGGTTACTTAGGTGGTAGACTCTGCCACGCCTTACTCAGCCACGGCTACTCTGTCCGAGCTTTCGTCCGCCGTACCAGCAATCTCTCGTCTCTCCCCGCAGCATCTTCTTCCTCGTCAAACTCCCACTTCGAACTCGCCTTCGGCGACATTACTGACTTCTCCTCCCTTCTCGCCGCCGTAACCGGTTGCGATATTATCATCCACTCCGCCGCCCTCGTTGATCCTTGGCTTCCTGACCCTTCTTGCATCTTCACTGTTAATGTTGGTGGGTTGAAGAATGTGATTCAAGCTTCTAAAGAATGTAATTCGATTCAGCAGATCATCTACACGTCGTCGTTTTTTACTCTTGGACCTACTGATGGCGGCGTCATTGCTGACGAGAATCAGGTACACCATGAGATGTTCTTTTGCACAGAATATGAGAGATCGAAGGTAATGGCGGATAAGATAGCATTACAAGCTGCATCAGATGGGGTTCAGGTTGTGGTGGTCTGTCCAGGCGTTATCTATGGTCCTGGCAAGCTTACTAATGGAAATATTGTTGCTAAAATGCTAATTGAGCGCTTTAATGGGCGGTTACCTGGTTACATTGGAGATGGAAATGACAAATTTTCTTTTACTCATGTTGATGATGTTGTCGAGGGACACATAGCGGCTATGGAGAAAGGTCGTCCTGGTGAACGATATTTACTTACAGGAGAGAATGCATCATTCAAGTATGTTTTTGATGCTGCAGCTATCCTTACCAACACTAGTAAGCCCCGTTTGACTCTTCCGATGTGGACAATAGAGGCTTATGGATGGATTTCTGTTCTTTTTGCACGGATTACTGGAAAGTTGCCTCTAATCAGTCCCCCGACTGTAGCTGTGTTGCGACATCAATGGGCGTATTCATGTGAGAAAGCAAAGAAAGAGCTATCTTACGACCAAAGAAGCTTGAAGGATGGCTTAGAAGAGATGCTTCCTTGGTTGAAGAATTCGGGCTGTATAAAATACTAAATTTCTCGGCATCGTGGTTTTTTTATGCGATGCTGGTTGTAAGATTCAGTTGTAAACAAATGCCTAACGATGTTGCTTAACTATCTTCACTGTACATCAGACTTGAGCCCAGATGTTCTCCTTGTAGACCTGAGGAGGTATCAATCTAATCATCCAATTTCAATTGTTCGATACCATGTACATTAACAATTTTTTGTAAGGATTGTATACATAACAATTCATGTCCATTTATAATGGAGCCAAAGATTCATTTGTTCTTTTGGCTTTGGTATGTAATGGACTAAATCAAACAGGCTATTAAAACATCTTCGCTTCCTTTCCATGAAGTAGAAGATGGTCGTCCAGTTATCGCTTTTGGGTCAATTGAGAATAACCTCTTTGCAATTGCAAGGGTAAGGTTGCGTACACCCTACCTCTCCTTACCCGCTTGTTGCGGGAGCCTTTTTGAGGCAATGGGTTAATGATAATGATAACCAATGATTGTATACATAATAATTGTTCAATAACATTTTTTTTACATACAGTAAAAGTACTGAAAATAAAGACACAAAAAAATCTAGTCTGGTTCTAGAGCAAAAGTAGCGAAGATTGCGCCTCCATTGATTGTCATCTGCGC ATGGAAAACAAAAAGATACTGGTAACCGGTGCATCAGGTTACTTAGGTGGTAGACTCTGCCACGCCTTACTCAGCCACGGCTACTCTGTCCGAGCTTTCGTCCGCCGTACCAGCAATCTCTCGTCTCTCCCCGCAGCATCTTCTTCCTCGTCAAACTCCCACTTCGAACTCGCCTTCGGCGACATTACTGACTTCTCCTCCCTTCTCGCCGCCGTAACCGGTTGCGATATTATCATCCACTCCGCCGCCCTCGTTGATCCTTGGCTTCCTGACCCTTCTTGCATCTTCACTGTTAATGTTGGTGGGTTGAAGAATGTGATTCAAGCTTCTAAAGAATGTAATTCGATTCAGCAGATCATCTACACGTCGTCGTTTTTTACTCTTGGACCTACTGATGGCGGCGTCATTGCTGACGAGAATCAGGTACACCATGAGATGTTCTTTTGCACAGAATATGAGAGATCGAAGGTAATGGCGGATAAGATAGCATTACAAGCTGCATCAGATGGGGTTCAGGTTGTGGTGGTCTGTCCAGGCGTTATCTATGGTCCTGGCAAGCTTACTAATGGAAATATTGTTGCTAAAATGCTAATTGAGCGCTTTAATGGGCGGTTACCTGGTTACATTGGAGATGGAAATGACAAATTTTCTTTTACTCATGTTGATGATGTTGTCGAGGGACACATAGCGGCTATGGAGAAAGGTCGTCCTGGTGAACGATATTTACTTACAGGAGAGAATGCATCATTCAAGTATGTTTTTGATGCTGCAGCTATCCTTACCAACACTAGTAAGCCCCGTTTGACTCTTCCGATGTGGACAATAGAGGCTTATGGATGGATTTCTGTTCTTTTTGCACGGATTACTGGAAAGTTGCCTCTAATCAGTCCCCCGACTGTAGCTGTGTTGCGACATCAATGGGCGTATTCATGTGAGAAAGCAAAGAAAGAGCTATCTTACGACCAAAGAAGCTTGAAGGATGGCTTAGAAGAGATGCTTCCTTGGTTGAAGAATTCGGGCTGTATAAAATACTAA MENKKILVTGASGYLGGRLCHALLSHGYSVRAFVRRTSNLSSLPAASSSSSNSHFELAFGDITDFSSLLAAVTGCDIIIHSAALVDPWLPDPSCIFTVNVGGLKNVIQASKECNSIQQIIYTSSFFTLGPTDGGVIADENQVHHEMFFCTEYERSKVMADKIALQAASDGVQVVVVCPGVIYGPGKLTNGNIVAKMLIERFNGRLPGYIGDGNDKFSFTHVDDVVEGHIAAMEKGRPGERYLLTGENASFKYVFDAAAILTNTSKPRLTLPMWTIEAYGWISVLFARITGKLPLISPPTVAVLRHQWAYSCEKAKKELSYDQRSLKDGLEEMLPWLKNSGCIKY Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo13921.1 vs. NCBI nr
Match: gi|902187354|gb|KNA10896.1| (hypothetical protein SOVF_140070 [Spinacia oleracea]) HSP 1 Score: 701.0 bits (1808), Expect = 1.000e-198 Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 1
BLAST of Spo13921.1 vs. NCBI nr
Match: gi|731314029|ref|XP_010683923.1| (PREDICTED: sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 550.4 bits (1417), Expect = 2.200e-153 Identity = 265/341 (77.71%), Postives = 303/341 (88.86%), Query Frame = 1
BLAST of Spo13921.1 vs. NCBI nr
Match: gi|802592617|ref|XP_012071679.1| (PREDICTED: dihydroflavonol-4-reductase isoform X1 [Jatropha curcas]) HSP 1 Score: 512.3 bits (1318), Expect = 6.600e-142 Identity = 244/340 (71.76%), Postives = 293/340 (86.18%), Query Frame = 1
BLAST of Spo13921.1 vs. NCBI nr
Match: gi|590592464|ref|XP_007017288.1| (NAD(P)-binding Rossmann-fold superfamily protein [Theobroma cacao]) HSP 1 Score: 507.7 bits (1306), Expect = 1.600e-140 Identity = 245/340 (72.06%), Postives = 290/340 (85.29%), Query Frame = 1
BLAST of Spo13921.1 vs. NCBI nr
Match: gi|823224707|ref|XP_012445129.1| (PREDICTED: dihydroflavonol-4-reductase [Gossypium raimondii]) HSP 1 Score: 507.3 bits (1305), Expect = 2.100e-140 Identity = 247/340 (72.65%), Postives = 289/340 (85.00%), Query Frame = 1
BLAST of Spo13921.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QWI1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_140070 PE=4 SV=1) HSP 1 Score: 701.0 bits (1808), Expect = 6.900e-199 Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 1
BLAST of Spo13921.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FUA4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g012790 PE=4 SV=1) HSP 1 Score: 550.4 bits (1417), Expect = 1.500e-153 Identity = 265/341 (77.71%), Postives = 303/341 (88.86%), Query Frame = 1
BLAST of Spo13921.1 vs. UniProtKB/TrEMBL
Match: A0A067L2N8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04294 PE=4 SV=1) HSP 1 Score: 512.3 bits (1318), Expect = 4.600e-142 Identity = 244/340 (71.76%), Postives = 293/340 (86.18%), Query Frame = 1
BLAST of Spo13921.1 vs. UniProtKB/TrEMBL
Match: A0A061FC83_THECC (NAD(P)-binding Rossmann-fold superfamily protein OS=Theobroma cacao GN=TCM_033871 PE=4 SV=1) HSP 1 Score: 507.7 bits (1306), Expect = 1.100e-140 Identity = 245/340 (72.06%), Postives = 290/340 (85.29%), Query Frame = 1
BLAST of Spo13921.1 vs. UniProtKB/TrEMBL
Match: A0A0D2TT77_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G211000 PE=4 SV=1) HSP 1 Score: 507.3 bits (1305), Expect = 1.500e-140 Identity = 247/340 (72.65%), Postives = 289/340 (85.00%), Query Frame = 1
BLAST of Spo13921.1 vs. ExPASy Swiss-Prot
Match: DFRA_SYNY3 (Putative dihydroflavonol-4-reductase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=dfrA PE=3 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 1.300e-36 Identity = 101/346 (29.19%), Postives = 161/346 (46.53%), Query Frame = 1
BLAST of Spo13921.1 vs. ExPASy Swiss-Prot
Match: 3BHS_MYCTO (3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT1137 PE=3 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 3.700e-20 Identity = 96/350 (27.43%), Postives = 156/350 (44.57%), Query Frame = 1
BLAST of Spo13921.1 vs. ExPASy Swiss-Prot
Match: 3BHS_MYCTU (3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv1106c PE=1 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 3.700e-20 Identity = 96/350 (27.43%), Postives = 156/350 (44.57%), Query Frame = 1
BLAST of Spo13921.1 vs. ExPASy Swiss-Prot
Match: NSDHL_HUMAN (Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Homo sapiens GN=NSDHL PE=1 SV=2) HSP 1 Score: 92.0 bits (227), Expect = 1.300e-17 Identity = 86/331 (25.98%), Postives = 141/331 (42.60%), Query Frame = 1
BLAST of Spo13921.1 vs. ExPASy Swiss-Prot
Match: NSDHL_MOUSE (Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Mus musculus GN=Nsdhl PE=1 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 2.300e-17 Identity = 86/331 (25.98%), Postives = 139/331 (41.99%), Query Frame = 1
BLAST of Spo13921.1 vs. TAIR (Arabidopsis)
Match: AT4G33360.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 502.7 bits (1293), Expect = 1.800e-142 Identity = 238/343 (69.39%), Postives = 285/343 (83.09%), Query Frame = 1
BLAST of Spo13921.1 vs. TAIR (Arabidopsis)
Match: AT1G09480.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 108.6 bits (270), Expect = 7.700e-24 Identity = 83/269 (30.86%), Postives = 128/269 (47.58%), Query Frame = 1
BLAST of Spo13921.1 vs. TAIR (Arabidopsis)
Match: AT1G09490.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 104.8 bits (260), Expect = 1.100e-22 Identity = 83/271 (30.63%), Postives = 129/271 (47.60%), Query Frame = 1
BLAST of Spo13921.1 vs. TAIR (Arabidopsis)
Match: AT1G09510.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 99.4 bits (246), Expect = 4.700e-21 Identity = 81/261 (31.03%), Postives = 125/261 (47.89%), Query Frame = 1
BLAST of Spo13921.1 vs. TAIR (Arabidopsis)
Match: AT1G66800.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 97.1 bits (240), Expect = 2.300e-20 Identity = 77/264 (29.17%), Postives = 127/264 (48.11%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo13921.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo13921.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo13921.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo13921.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
|