Spo13926 (gene) | SpinachBase

Overview


Name	Spo13926
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr2 : 23298598 .. 23301038 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTACCTCGATGGGCAGCATCCCTCCCAGTTGAGATTTTTTCCATTCCCAGGGCTCGAACCCAAGACCTTGGTTAAGGAGCAAGAGGCCCTTAACCACTCATGCCAACCTCAATTGGTATACGGAGTAACATGTAATAGCATTTAATTATTATTAGGTGCATTTAATGTACTCCGTAGTTGATAAGTCATTAGTATACGGGTATCAAAGAGGAGTCTATTAGATTTTGTGTACCATTGAGAAAAGTCAACTTTAGTAACTTTAGATTGGGTGATGATAAAGGTCGCAAGTTGCGACAACATTTAGTTGTCGCAATCTTACGTGTCGCAGTTTAATTGGTACATATAGGCGACACGTAGGCTATGAGTCATAATAATATTTTTACTATCAATGCAATATTTTTACTATAAAAATATGTAAATAAGGTAGTCGATATAAATAAGGAAATAAATTAGAATATTAAGATTTTCCTAGTTTTTTTTAAAACATTTAAAGTAGCACTACTACAAAATGCGTCATTTCTCGACACTATAGCCTCGACGGTGAGGATAACCGCTGGTATCAAATTATGGTATCCGTGTTTTCTCGACGGTTATAAATTCCATTCAATTTTCTCGTCTAATATTAACGTCGAGATATTGGTCAGCAGCCACATGACCCTCACGTGGTCTTATTTGGTTTTCCGCGTATTCATTTTGGGTGAGAACTTGCCCCGCTACCACCCGCCGTTCTCACTTCTCAATCTTAACCCTAAACTGATAGTACTCCGTAACTTCTACGCTCTCTCAAATCACTGGTTTCAGATCTACATTTCTAATAATCTCTTTCAATAAGTTCTCCTCTTTCTCTTCATTTCTTTGAAATTCACTTTTCATCTCCTAAAAATCCACTGAATTTTTTAAATTTTTTAAATTTTTTTCCCCTTTTTTTTTTTTTCAGGATTCATCGCTCTCAGATCTCGGTTCTATGATTTCGTTCAACACGATTCCGGATACTTTGAAGGTAGTCAGGTCAGTTCACAATTACAATCTCATTGATTTATTTATTTTCTCCCTTTTGTTGGTGAAGTAATCTAGGTCTAATTTCTGGTTAGAAAAATTGATCCGGAATTTGTTTAATTTGATTATCGGGTTTGATGATTCGGGAAATGCAATGTTGGTTTATTGATCCATGTGAATGATCTGGAAATTGAGTTTGTAATCAACATTAAAATCCAAGTTTGAGTTTTTTAATTGATTGTTTATGACAGTCCAACCCCTTCTTTATTTTCGCAGTATTTGCCGCTTGAACAATTTTATAGTTTCGTTTCACTTTTTGTTATTAGATGCTAAGGGATTTCTTAATTGATAATTTTAGAATAAAAATTCAATTGTTACAAGTATTTTTCCCCCCTCTTGTATCTGACTGTGGATGCAGCCATGATGCATTTAATATCTTCCGTTGTATCATGCTTGATTGATGATTATATTGAGTAATTGTAAACTGCTATTCTAAGTTGTTGTCACATGTGGTTTGCTGGCCATTTTAGGCACAATGAAAGCTTCAGTAATATTTTCAGTTCTAAATATCAAGCATCAGTTACATCATGAATAACAGAGTATACTGAATAAATTTTATCTATTAGTGCCTGGAAGGATAGAAAACATGCTTGTCTATTCTAAGTCTATGTCTCTATTCCTACCAGTTACATTTCCTGTTTCCTGTTAATTTCCATGTTCCCAATTTTACGAGTTTGGTACTAGAATTATTTTCATTACACTATCTAAGTTGATGATGACTGTTTGAGCATCTGCTGGATTTAGATTAATTTCATATTTCTTGATCAACACTACTACAATTTCCGTAGTTTCTCGACGCTGTACAAATTTGCTGAGGCTGGATTTAATCTAAAAAAATCTCATAGAATCTCATTTACACGAGTGTCCAGTTTAGATTTCAGACTATTACATACGGAATACTAGATTCAGGGCAGTTGAGTATTGAATTACTATTTTATTGTCATTTGCATGATTAGGCGTATAGCGTAAATGTTGCACTGGCTGAATATGTCTTATGTATAGCGTAAAAGTTTGACAAGGCGTAACACTACTTGTGTTTTTCAAGAAATAAATGATTCTTGTTCTTGCCAAGATGTATTTCTTGCATTACTCTTCAAGCTGAAGGCCAACTCTTGTTTTTTTTACAGGAACTGATGTTGTAGGGGAGGTAGTCGAGGTTGGATCTTCGGCAACAAAGTTCAAAGCTGGTGACAAGGTTCTGACCCTGTTAAGCCATGATGTAAGCTGCTTGTTTCTCAATTCCATAATTCTTCAATCAGAATAGTTTTTTTTAGAAGCTTACAGTGGGGTAAAAACCAACGTGACTGGTGTTTCATTGACTGACTGACCGGTGGTGCACTGGCTGAATATGCAGTGGAAAAAGAGACATGACAGTTGCTAG

mRNA sequence

ATGGGTACCTCGATGGGCAGCATCCCTCCCAGATTCATCGCTCTCAGATCTCGGTTCTATGATTTCGTTCAACACGATTCCGGATACTTTGAAGGAACTGATGTTGTAGGGGAGGTAGTCGAGGTTGGATCTTCGGCAACAAAGTTCAAAGCTGGTGACAAGGTTCTGACCCTGTTAAGCCATGATTGGAAAAAGAGACATGACAGTTGCTAG

Coding sequence (CDS)

ATGGGTACCTCGATGGGCAGCATCCCTCCCAGATTCATCGCTCTCAGATCTCGGTTCTATGATTTCGTTCAACACGATTCCGGATACTTTGAAGGAACTGATGTTGTAGGGGAGGTAGTCGAGGTTGGATCTTCGGCAACAAAGTTCAAAGCTGGTGACAAGGTTCTGACCCTGTTAAGCCATGATTGGAAAAAGAGACATGACAGTTGCTAG

Protein sequence

MGTSMGSIPPRFIALRSRFYDFVQHDSGYFEGTDVVGEVVEVGSSATKFKAGDKVLTLLSHDWKKRHDSC

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo13926.1	Spo13926.1	mRNA

Homology

[Close]

BLAST of Spo13926.1 vs. NCBI nr
Match: gi|902052257|gb|KNA02862.1| (hypothetical protein SOVF_214630, partial [Spinacia oleracea])

HSP 1 Score: 79.3 bits (194), Expect = 2.900e-12
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1


		  
Query: 34 DVVGEVVEVGSSATKFKAGDKVLTLLSHDWKKRHDSC 71
          DVVGEVVEVGSSATKFKAGDKVLTLLSHDWKKRHDSC
Sbjct: 1  DVVGEVVEVGSSATKFKAGDKVLTLLSHDWKKRHDSC 37

[Close]

BLAST of Spo13926.1 vs. NCBI nr
Match: gi|902227480|gb|KNA20717.1| (hypothetical protein SOVF_050050 [Spinacia oleracea])

HSP 1 Score: 57.8 bits (138), Expect = 9.000e-6
Identity = 28/33 (84.85%), Postives = 29/33 (87.88%), Query Frame = 1


		  
Query: 29 YFEGTDVVGEVVEVGSSATKFKAGDKVLTLLSH 62
          Y  GTDV GEVV+VGSSATKFKAGDKVL LLSH
Sbjct: 67 YVPGTDVAGEVVKVGSSATKFKAGDKVLALLSH 99

[Close]

BLAST of Spo13926.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q6X5_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_214630 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.000e-12
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1


		  
Query: 34 DVVGEVVEVGSSATKFKAGDKVLTLLSHDWKKRHDSC 71
          DVVGEVVEVGSSATKFKAGDKVLTLLSHDWKKRHDSC
Sbjct: 1  DVVGEVVEVGSSATKFKAGDKVLTLLSHDWKKRHDSC 37

[Close]

BLAST of Spo13926.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RPF6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_050050 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.300e-6
Identity = 28/33 (84.85%), Postives = 29/33 (87.88%), Query Frame = 1


		  
Query: 29 YFEGTDVVGEVVEVGSSATKFKAGDKVLTLLSH 62
          Y  GTDV GEVV+VGSSATKFKAGDKVL LLSH
Sbjct: 67 YVPGTDVAGEVVKVGSSATKFKAGDKVLALLSH 99

The following BLAST results are available for this feature:

BLAST of Spo13926.1 vs. NCBI nr
BLAST of Spo13926.1 vs. UniProtKB/TrEMBL
BLAST of Spo13926.1 vs. ExPASy Swiss-Prot
BLAST of Spo13926.1 vs. TAIR (Arabidopsis)

BLAST of Spo13926.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2


Match Name	E-value	Identity	Description
gi\|902052257\|gb\|KNA02862.1\|	2.9e-12	100.	hypothetical protein SOVF_2146...	[more]
gi\|902227480\|gb\|KNA20717.1\|	9.0e-6	84.8	hypothetical protein SOVF_0500...	[more]

BLAST of Spo13926.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2


Match Name	E-value	Identity	Description
A0A0K9Q6X5_SPIOL	2.0e-12	100.	Uncharacterized protein (Fragm...	[more]
A0A0K9RPF6_SPIOL	6.3e-6	84.8	Uncharacterized protein OS=Spi...	[more]

BLAST of Spo13926.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo13926.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011032	GroES-like	GENE3D	3.90.180.10		coord: 26..59 score: 8.
IPR011032	GroES-like	unknown	SSF50129	GroES-like	coord: 24..69 score: 4.2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0005515	protein binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo26158	0.92	Barchart \| Table
Spo18987	0.82	Barchart \| Table
Spo22616	0.79	Barchart \| Table
Spo18988	0.79	Barchart \| Table
Spo27030	0.67	Barchart \| Table
Spo05640	0.67	Barchart \| Table
Spo25851	0.67	Barchart \| Table
Spo03285	0.65	Barchart \| Table