Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGACAAGCTGTTAACAATTAGATAGCCATCGGAGATGCTCTAACCTAGCTAGTTGTCAAGCTAGTAGGTTGAACTTGCTTTGCTCACTCTCAAATTTCTTATATAAACCCACATATCCTCTGTCTAGTTTCCTCATTCCATAAAATATTTTACACAATAACTCCATACAACAATTAAGGCTAACTTAAAAATGAGCACCCTTGGACCAATCTTGGCCATTCTCGTGGTGGCGGTTGCTTGTATGTCAACCACCTTATTAGTTACAGCTCAAAACTGTGGTTGTGCCTCTGGTTTCTGCTGCAGTAAATTTGGTTACTGCGGTAAAACAGCTGAATACTGCGGTGAAGGGTGCAAACAAGGCCCTTGCACTTCTGGTTCAACTCCTACCACCCCAAGTGGTGGTGGTGGTGGTGGTGGTTCGGTGTCGAGTTTGGTGACAGAGTCGTTCTTTAATGGGATTGTTAACCAAGCAGCATCAAACTGTGCTGGTAAAAACTTCTACACAAGGTCTGCTTTCTTGAATGCTCTAAATAGTTATCCTCAGTTCGGTACTGGTGGATCTGCTGATGTTACTAAGCGTGAAGTTGCTGCTATGTTTGCTCATTACACCCATGAAACTGGACGTAAGTCACTAATTAATATTTAATAATAAGTCAGTGTTATGAATCAATGTTTATAATTCTCAACATTATATTGATATCACTACAAGAAATTGTTCAATTAACGACGGGAAATCCCGTCGCTAAAAGATCAATAGTATGTTTTCCCCGCCCTACTTGATGAAAAATCTCGTCGTTACTCTGCCTTTAGTCACTAATGCTCCGTTTAATGTGTCTAAAACATTTTCAAGAAAAAATTAATGATTTCAAACTAGTTTTCCTTTATTTGGTTCGTTATAAGAATATTAATAGAAATAGTAAAAAACAGGAGAAGATGAGTGAAGATTGATGGGAAGAAGGAAGATGGAGGTAAGGAGGAAAGTTGGAAAAGTGCCCTTACTCATTTCCATATAGTTATGTAAAATTATTTTTCATCCTTGTGCTACAAGAATTTGCTTCATTATGACAACCAAATAACGATAGATCCCGTCAAAAAAGTTTGTAGCGACAGAGCTAAAAACCAAATAAGGACGGGAACAACAGTTGCAAATGCTTTTTACGACAGGCTAACGATGAGATTTTCCATCAATGACGGCGCTCTCTTATTACGGGTTCGATACAAGAAATCCCACCACTATTGGCCTTAGCGACGGGATTTCCATCAACTTTTTGTAGTGTTCTCAAACCAAACAACGTAAAATGATTGAAAAGGAGAAAATTGTTTTCCATGAAAACGTTTTACACCCTACCAATTAACATAGCCGAAGTTAGTGTTATGAATCAATGTTTAATATTGACATGAAACTTGTTTCGATGTTGCAGACTTTTGCTATAAAGAGGAGATTATGAAATCAGCATACTGTCAACCGAGTGCACAATATCCATGTAATCCAAGCAAGCAATACTATGGCAGAGGACCAATTCAAATATCATGGAATTACAACTACATACCAGCTGGTAAAAGCATTGGATTTGACGGTTTAAATGCACCAGAAACAGTTGCAAATGATGCTGTTGTTGCATTCAAAACAGGATTCTGGTTTTGGATGAACAATGTTCATTCTAAGATTAACCAAGGTTTTGGTGCTACCATTCGAGCTATCAATGGAATCGAATGTGGTGGTGGAAACACAGCTGCTGTAAATGCTCGTATTAATTACTATAAAAGTTACTGTAATCAGCTTGGTGTTTCACCCGGGGATAACCTTTCTTGCTAAGGGAATATGTAAAGATGGCCATGGGCTGGGCCACCCGAGGCAAGGCCCGGCCTGACCCGTTACAAAAAAAAAAGAAAGTAGAATATGAACTAAGGGTTATGTGTAGCTACTTCTTCTCAATTATGCAAAATAAGTGTACACTCGATTTTAAGATCGTGCATTGCAAGGGCTGGAAATTAAATAAATGAACAATAAGAGCTGAGTGTAGGGATTAAGGAGTTTATGTGATGTTATTGCATTGTTCTATTAAAATATCCAACAAATATGACTCCATACTTGAGTTGAATAAATTAATAAATAACATAATATTTAAATTGATACAAATTCCTTTGGAAATTTATTCATTTGCAATACATATGAGCAAATGACACTAATCTACGTACTATAAAAATGTCAAAAAAAAAAAACAATAAAACCTACCTAAGAGACAATAAGTAGTTTGTCTCGGTCCTTTTTTCTTCTGAAAGAGATCATCAGGTTATAACCCGACTCTCACTCTTACAAATGTGTACTCAACTTTCTTTTGTAAGAAACAGATGAGAAATTAT ATGACAAGCTGTTAACAATTAGATAGCCATCGGAGATGCTCTAACCTAGCTAGTTGTCAAGCTAGTAGGTTGAACTTGCTTTGCTCACTCTCAAATTTCTTATATAAACCCACATATCCTCTGTCTAGTTTCCTCATTCCATAAAATATTTTACACAATAACTCCATACAACAATTAAGGCTAACTTAAAAATGAGCACCCTTGGACCAATCTTGGCCATTCTCGTGGTGGCGGTTGCTTGTATGTCAACCACCTTATTAGTTACAGCTCAAAACTGTGGTTGTGCCTCTGGTTTCTGCTGCAGTAAATTTGGTTACTGCGGTAAAACAGCTGAATACTGCGGTGAAGGGTGCAAACAAGGCCCTTGCACTTCTGGTTCAACTCCTACCACCCCAAGTGGTGGTGGTGGTGGTGGTGGTTCGGTGTCGAGTTTGGTGACAGAGTCGTTCTTTAATGGGATTGTTAACCAAGCAGCATCAAACTGTGCTGGTAAAAACTTCTACACAAGGTCTGCTTTCTTGAATGCTCTAAATAGTTATCCTCAGTTCGGTACTGGTGGATCTGCTGATGTTACTAAGCGTGAAGTTGCTGCTATGTTTGCTCATTACACCCATGAAACTGGACACTTTTGCTATAAAGAGGAGATTATGAAATCAGCATACTGTCAACCGAGTGCACAATATCCATGTAATCCAAGCAAGCAATACTATGGCAGAGGACCAATTCAAATATCATGGAATTACAACTACATACCAGCTGGTAAAAGCATTGGATTTGACGGTTTAAATGCACCAGAAACAGTTGCAAATGATGCTGTTGTTGCATTCAAAACAGGATTCTGGTTTTGGATGAACAATGTTCATTCTAAGATTAACCAAGGTTTTGGTGCTACCATTCGAGCTATCAATGGAATCGAATGTGGTGGTGGAAACACAGCTGCTGTAAATGCTCGTATTAATTACTATAAAAGTTACTGTAATCAGCTTGGTGTTTCACCCGGGGATAACCTTTCTTGCTAAGGGAATATGTAAAGATGGCCATGGGCTGGGCCACCCGAGGCAAGGCCCGGCCTGACCCGTTACAAAAAAAAAAGAAAGTAGAATATGAACTAAGGGTTATGTGTAGCTACTTCTTCTCAATTATGCAAAATAAGTGTACACTCGATTTTAAGATCGTGCATTGCAAGGGCTGGAAATTAAATAAATGAACAATAAGAGCTGAGTGTAGGGATTAAGGAGTTTATGTGATGTTATTGCATTGTTCTATTAAAATATCCAACAAATATGACTCCATACTTGAGTTGAATAAATTAATAAATAACATAATATTTAAATTGATACAAATTCCTTTGGAAATTTATTCATTTGCAATACATATGAGCAAATGACACTAATCTACGTACTATAAAAATGTCAAAAAAAAAAAACAATAAAACCTACCTAAGAGACAATAAGTAGTTTGTCTCGGTCCTTTTTTCTTCTGAAAGAGATCATCAGGTTATAACCCGACTCTCACTCTTACAAATGTGTACTCAACTTTCTTTTGTAAGAAACAGATGAGAAATTAT ATGAGCACCCTTGGACCAATCTTGGCCATTCTCGTGGTGGCGGTTGCTTGTATGTCAACCACCTTATTAGTTACAGCTCAAAACTGTGGTTGTGCCTCTGGTTTCTGCTGCAGTAAATTTGGTTACTGCGGTAAAACAGCTGAATACTGCGGTGAAGGGTGCAAACAAGGCCCTTGCACTTCTGGTTCAACTCCTACCACCCCAAGTGGTGGTGGTGGTGGTGGTGGTTCGGTGTCGAGTTTGGTGACAGAGTCGTTCTTTAATGGGATTGTTAACCAAGCAGCATCAAACTGTGCTGGTAAAAACTTCTACACAAGGTCTGCTTTCTTGAATGCTCTAAATAGTTATCCTCAGTTCGGTACTGGTGGATCTGCTGATGTTACTAAGCGTGAAGTTGCTGCTATGTTTGCTCATTACACCCATGAAACTGGACACTTTTGCTATAAAGAGGAGATTATGAAATCAGCATACTGTCAACCGAGTGCACAATATCCATGTAATCCAAGCAAGCAATACTATGGCAGAGGACCAATTCAAATATCATGGAATTACAACTACATACCAGCTGGTAAAAGCATTGGATTTGACGGTTTAAATGCACCAGAAACAGTTGCAAATGATGCTGTTGTTGCATTCAAAACAGGATTCTGGTTTTGGATGAACAATGTTCATTCTAAGATTAACCAAGGTTTTGGTGCTACCATTCGAGCTATCAATGGAATCGAATGTGGTGGTGGAAACACAGCTGCTGTAAATGCTCGTATTAATTACTATAAAAGTTACTGTAATCAGCTTGGTGTTTCACCCGGGGATAACCTTTCTTGCTAA MSTLGPILAILVVAVACMSTTLLVTAQNCGCASGFCCSKFGYCGKTAEYCGEGCKQGPCTSGSTPTTPSGGGGGGGSVSSLVTESFFNGIVNQAASNCAGKNFYTRSAFLNALNSYPQFGTGGSADVTKREVAAMFAHYTHETGHFCYKEEIMKSAYCQPSAQYPCNPSKQYYGRGPIQISWNYNYIPAGKSIGFDGLNAPETVANDAVVAFKTGFWFWMNNVHSKINQGFGATIRAINGIECGGGNTAAVNARINYYKSYCNQLGVSPGDNLSC Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo13947.1 vs. NCBI nr
Match: gi|902159842|gb|KNA06361.1| (hypothetical protein SOVF_181780 [Spinacia oleracea]) HSP 1 Score: 568.2 bits (1463), Expect = 8.000e-159 Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 1
BLAST of Spo13947.1 vs. NCBI nr
Match: gi|902159841|gb|KNA06360.1| (hypothetical protein SOVF_181770 [Spinacia oleracea]) HSP 1 Score: 461.1 bits (1185), Expect = 1.400e-126 Identity = 227/278 (81.65%), Postives = 249/278 (89.57%), Query Frame = 1
BLAST of Spo13947.1 vs. NCBI nr
Match: gi|902159840|gb|KNA06359.1| (hypothetical protein SOVF_181760 [Spinacia oleracea]) HSP 1 Score: 450.3 bits (1157), Expect = 2.400e-123 Identity = 220/278 (79.14%), Postives = 244/278 (87.77%), Query Frame = 1
BLAST of Spo13947.1 vs. NCBI nr
Match: gi|2570162|dbj|BAA22966.1| (chitinase [Chenopodium amaranticolor]) HSP 1 Score: 437.6 bits (1124), Expect = 1.600e-119 Identity = 216/277 (77.98%), Postives = 238/277 (85.92%), Query Frame = 1
BLAST of Spo13947.1 vs. NCBI nr
Match: gi|2570160|dbj|BAA22965.1| (chitinase [Chenopodium amaranticolor]) HSP 1 Score: 436.0 bits (1120), Expect = 4.800e-119 Identity = 215/278 (77.34%), Postives = 238/278 (85.61%), Query Frame = 1
BLAST of Spo13947.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QIG0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_181780 PE=3 SV=1) HSP 1 Score: 568.2 bits (1463), Expect = 5.600e-159 Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 1
BLAST of Spo13947.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QGK5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_181770 PE=3 SV=1) HSP 1 Score: 461.1 bits (1185), Expect = 9.700e-127 Identity = 227/278 (81.65%), Postives = 249/278 (89.57%), Query Frame = 1
BLAST of Spo13947.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QGE9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_181760 PE=3 SV=1) HSP 1 Score: 450.3 bits (1157), Expect = 1.700e-123 Identity = 220/278 (79.14%), Postives = 244/278 (87.77%), Query Frame = 1
BLAST of Spo13947.1 vs. UniProtKB/TrEMBL
Match: O23804_9CARY (Chitinase OS=Chenopodium amaranticolor PE=2 SV=1) HSP 1 Score: 437.6 bits (1124), Expect = 1.100e-119 Identity = 216/277 (77.98%), Postives = 238/277 (85.92%), Query Frame = 1
BLAST of Spo13947.1 vs. UniProtKB/TrEMBL
Match: O23803_9CARY (Chitinase OS=Chenopodium amaranticolor PE=2 SV=1) HSP 1 Score: 436.0 bits (1120), Expect = 3.300e-119 Identity = 215/278 (77.34%), Postives = 238/278 (85.61%), Query Frame = 1
BLAST of Spo13947.1 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1) HSP 1 Score: 335.1 bits (858), Expect = 7.200e-91 Identity = 171/281 (60.85%), Postives = 201/281 (71.53%), Query Frame = 1
BLAST of Spo13947.1 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2) HSP 1 Score: 332.4 bits (851), Expect = 4.700e-90 Identity = 157/256 (61.33%), Postives = 190/256 (74.22%), Query Frame = 1
BLAST of Spo13947.1 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1) HSP 1 Score: 332.4 bits (851), Expect = 4.700e-90 Identity = 168/273 (61.54%), Postives = 194/273 (71.06%), Query Frame = 1
BLAST of Spo13947.1 vs. ExPASy Swiss-Prot
Match: CHI5_ARATH (Endochitinase EP3 OS=Arabidopsis thaliana GN=EP3 PE=1 SV=1) HSP 1 Score: 330.5 bits (846), Expect = 1.800e-89 Identity = 164/273 (60.07%), Postives = 202/273 (73.99%), Query Frame = 1
BLAST of Spo13947.1 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1) HSP 1 Score: 328.9 bits (842), Expect = 5.100e-89 Identity = 166/280 (59.29%), Postives = 197/280 (70.36%), Query Frame = 1
BLAST of Spo13947.1 vs. TAIR (Arabidopsis)
Match: AT3G54420.1 (homolog of carrot EP3-3 chitinase) HSP 1 Score: 330.5 bits (846), Expect = 1.000e-90 Identity = 164/273 (60.07%), Postives = 202/273 (73.99%), Query Frame = 1
BLAST of Spo13947.1 vs. TAIR (Arabidopsis)
Match: AT2G43590.1 (Chitinase family protein) HSP 1 Score: 325.1 bits (832), Expect = 4.200e-89 Identity = 159/271 (58.67%), Postives = 189/271 (69.74%), Query Frame = 1
BLAST of Spo13947.1 vs. TAIR (Arabidopsis)
Match: AT2G43580.1 (Chitinase family protein) HSP 1 Score: 293.1 bits (749), Expect = 1.800e-79 Identity = 142/271 (52.40%), Postives = 185/271 (68.27%), Query Frame = 1
BLAST of Spo13947.1 vs. TAIR (Arabidopsis)
Match: AT2G43620.1 (Chitinase family protein) HSP 1 Score: 276.9 bits (707), Expect = 1.300e-74 Identity = 132/262 (50.38%), Postives = 169/262 (64.50%), Query Frame = 1
BLAST of Spo13947.1 vs. TAIR (Arabidopsis)
Match: AT2G43610.1 (Chitinase family protein) HSP 1 Score: 275.4 bits (703), Expect = 3.800e-74 Identity = 142/285 (49.82%), Postives = 178/285 (62.46%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo13947.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo13947.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo13947.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo13947.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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